Typing tool
|
Complete norovirus genomes
HQ009513 | GII.4 New Orleans | ||
---|---|---|---|
GII.P4 Hunter |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS HQ009513 7558 bp RNA linear VRL 05-SEP-2010 DEFINITION Norovirus Hu/GII.4/JB-15/KOR/2008, complete genome. ACCESSION HQ009513 VERSION HQ009513.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/JB-15/KOR/2008 ORGANISM Norovirus Hu/GII.4/JB-15/KOR/2008 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7558) AUTHORS Jang,K.M., Oh,T.K., Kim,C.H. and Choi,C.W. TITLE Complete nucleotide sequence of human norovirus JB-15 isolated from Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 7558) AUTHORS Jang,K.M., Oh,T.K., Kim,C.H. and Choi,C.W. TITLE Direct Submission JOURNAL Submitted (02-AUG-2010) Biology, Pai Chai University, 14 Yeon-ja 1Gil Seo-gu, Daejeon, Chungnam 302-735, Korea FEATURES Location/Qualifiers source 1..7558 /organism="Norovirus Hu/GII.4/JB-15/KOR/2008" /mol_type="genomic RNA" /strain="Hu/GII.4/JB-15/KOR/2008" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:880562" /country="South Korea" /collection_date="2008" CDS 5..5104 /note="ORF1" /codon_start=1 /product="non-structural polyprotein" /protein_id="ADM52742.1" /translation="MKMASNDASAAAVANSNNDTVKSSSDGVLSSMAVTFKRALGARP KQPPPREIPQGPPRPPTPELIKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LARVELTPLSLYWRPVYTPQYLISPDALKRLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQSLWSKPQVENTEETTSKDGC PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG RYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAEIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLHTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="ORF2; VP1" /codon_start=1 /product="capsid protein" /protein_id="ADM52743.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG NTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /note="ORF3" /codon_start=1 /product="VP2" /protein_id="ADM52744.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRAAVPARGSSSTSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaata gcaacaacga 61 caccgtaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt tcaaacgagc 121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaggac ccccacgacc 181 acccactcca gaactgatca aaaatatccc ccctcctcca cccaacggag aggatgacat 241 agtggtttct tatagtgtca aagatggtgt ctctggtttg cctgatcttt ccaccgtcag 301 gcaaccggaa gaatctaata cggccttcag tgtccctcca ctcaatcaga gggagaatag 361 agatgctaag gaaccactga ctggaacaat tttggaaatg tgggatggag aaatctatca 421 ttatggcctg tatgtagagc gaggtcttgt gctaggtgtg cacaaaccac cagctgccat 481 cagcctcgcc agggtcgaac taacaccact ttccttgtac tggagacctg tgtatactcc 541 ccagtacctc atctctccag acgctctcaa gagactacac ggagagacgt tcccctatac 601 agcctttgac aacaactgct acgccttttg ttgttgggtc ctggacctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgactc caagttaaag aaggtagcta acatattcct 781 gtgtgcactg tcttcgctat tcaccaggcc tataaaagat ataataggga agctaaggcc 841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggagtc 901 cttgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg actacgagct acagggacct gaggaccttg cagtggagct 1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatcttg gtgcatatgg 1141 gctagagatc ctaaagttgg ttatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctata gtgagatcca tcgaggatgc agtcctggat ctcgaagcaa ttgaaaacaa 1261 ccatatgacc actttgctca aagacaaaga cagtctggca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca ggaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctggtgc atcgagcgaa 1441 ggaggaactt tctagcagac caagacctgt agtgttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcca gggaagtggc taagagaatc gcagcctccc ttacaggaga 1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga 1621 gagggtcgtt ctatgggacg actatggaat gagcaatcct atccacgatg ccctcagatt 1681 gcaagaactc gctgacactt gtcccctcac cctaaactgt gacaggattg agaacaaagg 1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggctaacc cagcaccact 1801 ggactatgtc aacttcgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagaagc 1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc 1921 cttcagttct gatttctcac acataaaact aacattggct ccacagggtg gtttcgacaa 1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccaccg gctccctcat 2041 tgcccgggca tcagggctac tccatgagag gctagatgaa tttgaactac agggcccaac 2101 tctcaccact ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga 2161 aaacaaatat gggttgatgg acacaatgaa agttgggagg cagctcaagg atgtcagaac 2221 aatgccagag ctcaagcaag cactcaagaa tatttcaatc aagaagtgcc agatagtgta 2281 tagtggtagc acctacacac ttgagtctga tggcaagggt aatgtgaagg ttgacagagt 2341 tcaaagcgcc tccgtgcaga ccaacaatga gctggctggc gccctacacc atctaaggtg 2401 cgccagaata agatactatg tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat 2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaagcctatg 2521 gtctaagcca caagtggaaa atacagagga gactaccagc aaggacgggt gtccaaaacc 2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aaaactgagg gcaagaaagg 2641 gaaaaacaag actggccgcg gtaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagagtac gatgagtaca agaggattag agaagaaagg aatggtaggt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccattgcca gggcgactga 2821 ggaagacttc tgtgaagagg aggaggccga gatccggcaa aggatcttca ggccgacaag 2881 gaaacaacgc aaggaggaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aagaaatcca gatgatttca aacccaaggg gaaactgtgg gctgacgatg acagaagtgt 3001 ggactacaat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggat tctgggtctc ccccagtttg ttcataacat caacccatgt 3121 cataccccag ggagcaaagg agttctttgg agtccccatc aaacaaattc aggtacataa 3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat 3241 gatcttagaa gaaggtgcac ccgagggcac cgtggttaca ctactcatca aaaggtccac 3301 tggggaactc atgcccctag cagctaggat ggggacccat gcaaccatga gaatccaagg 3361 acgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 tctgggtacc acaccaggtg attgtggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtgggggc aacactgtca tatgtgccac 3541 ccaggggagt gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaagacca aattctggag 3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggtaagga 3721 tcccagagtc aagggtgggc cttcactaca gcaggtcatg agggatcagc tgaagccatt 3781 cacagagccc aggggtaagc caccaaagcc aagtgtgttg gaagctgcta agaaaaccat 3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcgttcg cacaagcttg 3901 cgcgtccctt gataagacca cctccagcgg ccatccgcat cacatgcgga aaaacgactg 3961 ctggaacggg gagtccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgaagaa gggaagaaca tgacgccagt ctatacagct gcgcttaagg atgaattagt 4081 taaaactgac aaaatttatg gcaagattaa gaagaggctt ctctggggct cggatttggc 4141 gaccatgatc cggtgtgctc gagcattcgg aggcctgatg gatgaactca aagcgcactg 4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaggcactcc aggtacacgt accactatga tgctgattac tctcgatggg attcaacaca 4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aagttctccc cagaaccaca 4381 tttggcccag gtagtcgcag aagaccttct ttctcctagc gtggtggacg tgggtgactt 4441 cacaatatca attaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcccac tggcttcaca ccctctgtgc gctctctgaa gttacaaact tgtctcctga 4561 caccatacaa gctaattccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga 4621 cataaaattg gacccagaaa agttgacagc aaagctcagg gaatatgggt taaaaccaac 4681 ccgccccgac aaaactgaag gaccccttgc catctctgaa gacttgaatg gcctgacttt 4741 cttgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc 4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat 4861 gattccacac tcccaaagac ccatacaact gatgtcccta ctgggggagg ccgcactcca 4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ccattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagttcacag 5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatttga 5341 atccctacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgcg gcagtcccac 5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgttcccc cacataatag 5521 tagatgttag gcaactggaa cctgtgttga tccccttacc cgatgttagg aataatttct 5581 atcactataa tcaatcaaat gaccccacca tcaaattgat agcaatgttg tatacaccac 5641 ttagggctaa taatgctggg gacgatgtct tcacagtttc ttgtcgggta ctcacgagac 5701 catcccccga ttttgatttc atatttttag tgccacccac agttgaatca agaactaaac 5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt 5821 tggaaaagct gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aacggcaggt 5881 gcacgactga tggcgtgctc ctaggtacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccat attacaggta gtcgtaacta cacaatgaat ttggctactc 6001 aaaattggaa cagttatgac ccaacagaag aaatcccagc ccctctagga actccagatt 6061 tcgtgggaaa gatccaaggt gtgctcaccc aaaccacgag ggcagatggc tcgacccgtg 6121 gccacaaagc tacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc 6181 aatttgccac cgacacagac aatgattttg atgctaacca aaacacaaag ttcaccccag 6241 tcggtgtcat ccaggatggt aatactgccc accgaaatga accccaacaa tgggtgctcc 6301 caagttactc aggcagaaat agtcacaatg tgcacctggc ccccgctgta gcccccactt 6361 ttccgggtga gcaacttctc ttcttcagat ccactatgcc cggatgcagc gggtacccca 6421 acatggactt ggactgtctg ctcccccagg aatgggtgca gtatttctat caagaggcag 6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt 6541 tgtttgagtg taagcttcat aaatcaggct atgttacagt ggctcacacc ggccaacatg 6601 atttggttat cccccccaat ggttatttca gatttgattc ctgggtcaac cagttctaca 6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc attataatgg ctggagcttt 6721 ctttgctgga ttggcatctg acgtccttgg atccggactt ggttctctga tcaatgccgg 6781 ggctggggcc atcaaccaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc 6841 cttccaattt agtagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat 6961 gctcctagag ggtggattct ctgagacaga tgcagcccgt ggggcaatca acgcccccat 7021 gacaaaggct ttggactgga gtgggacaag gtactgggct cccgatgcta ggactacaac 7081 atacaatgca ggccactttt ccacccctca accctcgggg gcactgccag ggagagctaa 7141 tcttagggct gctgtccccg ctcggggctc ctccagcaca tcttctaact cttctactgc 7201 tacctctgtg tactcaaatc aaactacttc aacgagactt ggttctacag ctggttctgg 7261 tactagtgtc tcgagcctcc cgtcaactgc aagggctagg agctgggttg aggatcaaaa 7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg 7441 gactggcgct ttcaatacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cttttcttta gtgtctcc //