Typing tool
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Typing tool
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Complete norovirus genomes
| HM802553 | GII.4 Asia | |
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| GII.P12 |
ORF1: 1..1533
ORF2: 1514..3136
ORF3: 3136..3942
LOCUS HM802553 3988 bp RNA linear VRL 05-JAN-2012
DEFINITION Norovirus Hu/GII.4/Hong Kong/CU051013/2005/CHN RNA-dependent RNA
polymerase gene, partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION HM802553
VERSION HM802553.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Hong Kong/CU051013/2005/CHN
ORGANISM Norovirus Hu/GII.4/Hong Kong/CU051013/2005/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3988)
AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and
Sung,J.J.
TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus
Genogroup II Genotype 4 Strains
JOURNAL J. Virol. 86 (2), 1227-1232 (2012)
PUBMED 22072750
REFERENCE 2 (bases 1 to 3988)
AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese
University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of
Wales Hospital, Shatin, Hong Kong, China
FEATURES Location/Qualifiers
source 1..3988
/organism="Norovirus Hu/GII.4/Hong Kong/CU051013/2005/CHN"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Hong Kong/CU051013/2005/CHN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:932939"
/geo_loc_name="Hong Kong"
/collection_date="Oct-2005"
CDS <1..1533
/note="RdRp"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ADR78949.1"
/translation="GGDSKGTYCGAPILGPGNAPKLSTKTKFWRSSTAPLPPGTYEPA
YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIVNVLEQTIDPPQ
KWSFAQACASLDKTTSSGYPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV
YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDEFKAHCVTLPIRVG
MNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQKVA
EDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQA
NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLRPTRPDKTEGPLVISEDLNGLTFLR
RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALH
GPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG
VE"
CDS 1514..3136
/codon_start=1
/product="VP1"
/protein_id="ADR78950.1"
/translation="MKMASNDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVLLAGNAFTAGKIIFAAVPPTFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLVAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLERLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTNIPGSRTYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVRTGSADFTPKLGSVQFATDTDNDFVTGQNTRFTPVGVIHDG
SSAHRNEPQQWVLPEYSGRSVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 3136..3942
/codon_start=1
/product="VP2"
/protein_id="ADR78951.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGVINQKVDFENNRKLQQD
SFKFSSNLQQASFQHDKEMLQAQIEATKKLHQGMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALPGRANPRATVPARGSPSTPS
NTSAVTSVCSNQTVSTRLGSTAGSGTRVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 3943..3988
ORIGIN
1 ggcggtgaca gcaaggggac ctactgcggt gcaccaatct taggtccagg aaatgcccca
61 aagctcagca ccaagactaa attctggaga tcatccacgg caccactccc acctggtacc
121 tatgagccag cctacctcgg cggcaaggac cccagagtta agggtggccc ttcattgcaa
181 caagttatga gggaccagct gaaaccattc actgaaccta ggggtaaacc accaaaacca
241 agtgtattag aagctgccaa gaaaaccatc gtcaatgtcc ttgaacaaac aattgatcca
301 cctcaaaaat ggtcatttgc gcaggcatgc gcatcccttg acaagaccac ttccagtggt
361 tatccgcacc acatgcggaa aaacgactgc tggaacgggg aatcctttac aggcaaattg
421 gcagaccagg cttccaaggc caacctgatg ttcgaggaag gaaagaacat gaccccagtc
481 tacacgggtg cgcttaagga cgagctggtc aagactgaca aaatttatgg caagatcaaa
541 aagagacttc tctggggttc ggacctggcg accatgatcc ggtgcgctcg agcattcggg
601 ggcctgatgg atgaattcaa agcacattgt gtcacactac ctatcagagt gggtatgaat
661 atgaatgagg atggtcctat catctttgag aaacactcca gatataaata ccattatgat
721 gctgattact cccggtggga ctcaacacaa caaagagccg tgttagcagc ggctttagaa
781 atcatggtca agttctcccc agagccgcat ctggcccaaa aggttgcaga agaccttctt
841 tctcccagcg tgatggacgt gggtgatttt aaaatatcaa tcaatgaggg tctcccctcc
901 ggggtgccct gcacctccca atggaattcc atcgcccact ggctcctcac tctatgtgca
961 ctctctgagg ttacaaacct gtcccctgac attatccagg ccaactctct cttttctttc
1021 tacggtgatg atgaaattgt gagcacagac ataaaactgg acccagaaaa gctgacagca
1081 aaactcaagg aatacgggtt gagaccgacc cgccccgaca agactgaggg accccttgtt
1141 atctctgaag acctgaatgg cctaaccttc ctgcggagga ccgtgacccg cgacccagca
1201 ggctggtttg gaaagttgga acagagttca atactcagac aaatgtattg gactaggggc
1261 cccaaccatg aagacccatc tgaaacaatg ataccacact cccagaggcc catacaattg
1321 atgtctttgc tgggtgaggc tgcactccac ggcccagcat tctacagcaa aatcagcaaa
1381 ctggtcattg cagagttgaa ggaaggtggc atggattttt acgtgccaag acaagagcca
1441 atgttcagat ggatgagatt ctcggatctg agcacgtggg agggcgatcg caatctggct
1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccagc ccatctgatg ggtccgcagc
1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc
1621 tattgcggca cctgtggcgg gccaacaaaa tgtaattgac ccctggatta ggaataattt
1681 tgtacaagcc cctggtggag agttcacagt gtcccctaga aacgctccag gtgaaatact
1741 atggagcgcg cccttaggtc ctgatctgaa cccatacctt tctcacctgg ccagaatgta
1801 caatggttat gcaggtggtt ttgaagtgca ggtactcctc gcggggaacg cgttcaccgc
1861 cgggaaaatc atatttgcag cagtcccacc aacttttcca actgaaggct tgagccccag
1921 ccaggtcact atgttccccc acataatagt agatgttagg caattggaac ctgtgttgat
1981 ccccttacct gatgttagga ataatttcta ccattacaat caatcaaatg actccaccat
2041 taaattggta gcaatgctgt acacaccact tagggctaat aatgctgggg atgatgtctt
2101 cacagtctct tgtcgagtcc tcacgaggcc atcccccgat tttgatttta tatttctggt
2161 gccacccaca gttgagtcaa gaaccaaacc attcaccgtc ccaattttaa ctgttgagga
2221 aatgaccaat tcaagattcc ccattccttt ggaaagattg ttcacgggtc ccagcagtgc
2281 ctttgttgtc caaccacaaa atggcaggtg cacgactgac ggcgtgctct taggcactac
2341 ccaactgtcc cccgtcaaca tctgcacctt cagaggcgat gtcaccaaca ttccaggttc
2401 tcgtacttac agaatgaatt tggcttctca aaattggaac aattatgacc caacggaaga
2461 aatcccagcc cctctgggaa ctccagattt cgtgggaaag atccaaggcg tgctcaccca
2521 aaccacaaag ggagacggct cgacccgcgg tcacaaagct acagtgagaa ctgggagtgc
2581 tgattttact ccaaagctgg gcagcgttca gttcgccact gatacagaca atgattttgt
2641 aaccggccaa aacacaaggt tcaccccagt cggtgtcatc catgatggta gtagtgccca
2701 cagaaatgaa ccccaacaat gggtactccc agaatactca ggtagatctg ttcataatgt
2761 acacctagcc cctgccgtag cccccacttt tccgggtgag caacttcttt tcttcagatc
2821 tactatgccc ggatgcagtg ggtatcccaa tatggatttg gattgtctac tcccccagga
2881 atgggtgcag cacttctacc aagaggcagc cccgtcacaa tctgatgtgg ctttgctgag
2941 atttgtgaat ccggacacag gtagggttct gtttgagtgc aagcttcata aagcaggcta
3001 tgtcacagtg gctcacactg gccagcatga tttggttatc cctcccaatg gctactttag
3061 atttgattcc tgggtcaacc agttctacac acttgccccc atgggaaatg gagcggggcg
3121 tagacgtgca ttataatggc tggagctttc tttgctggat tggcatctga tgtccttggc
3181 tctggactcg gttccctgat caatgctggg gctggggtca ttaaccaaaa agttgatttt
3241 gaaaataaca gaaagttgca acaagattcc ttcaaattta gcagcaatct acaacaggct
3301 tcctttcaac atgacaaaga gatgctccaa gcacaaattg aggccactaa aaagttacat
3361 cagggtatga tgaaagtcaa acaggcaatg ctcctagagg gtggattctc tgaaacagat
3421 gcggcccgtg gggcaatcaa tgcccccatg acaaaggctt tggactggag cggaacaagg
3481 tactgggctc ctgatgctag aactacaaca tacaatgcag gccgtttttc cacccctcaa
3541 tcttcggggg cactgccagg aagagctaat cctagggcca ctgtccccgc tcggggctcc
3601 cccagcacac cttctaacac ttctgctgtt acttctgtct gttcaaatca aactgtttca
3661 acgaggcttg gttctacagc tggttctggc accagagtct cgagtctccc gtcaactgca
3721 aggactagga gctgggttga ggatcaaaac aggaatttgt cacctttcat gaggggggct
3781 cacaacatat cgttcgtcac cccaccatct agtagatcct ctagccaagg cacagtctca
3841 accgtgccca aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct
3901 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg
3961 attatcttcc ttttctttag tgtctttt
//