Typing tool
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Complete norovirus genomes
HM802553 | GII.4 Asia | ||
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GII.P12 |
ORF1: 1..1533 ORF2: 1514..3136 ORF3: 3136..3942LOCUS HM802553 3988 bp RNA linear VRL 05-JAN-2012 DEFINITION Norovirus Hu/GII.4/Hong Kong/CU051013/2005/CHN RNA-dependent RNA polymerase gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION HM802553 VERSION HM802553.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Hong Kong/CU051013/2005/CHN ORGANISM Norovirus Hu/GII.4/Hong Kong/CU051013/2005/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3988) AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and Sung,J.J. TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus Genogroup II Genotype 4 Strains JOURNAL J. Virol. 86 (2), 1227-1232 (2012) PUBMED 22072750 REFERENCE 2 (bases 1 to 3988) AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y. TITLE Direct Submission JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of Wales Hospital, Shatin, Hong Kong, China FEATURES Location/Qualifiers source 1..3988 /organism="Norovirus Hu/GII.4/Hong Kong/CU051013/2005/CHN" /mol_type="genomic RNA" /strain="Hu/GII.4/Hong Kong/CU051013/2005/CHN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:932939" /country="Hong Kong" /collection_date="Oct-2005" CDS <1..1533 /note="RdRp" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ADR78949.1" /translation="GGDSKGTYCGAPILGPGNAPKLSTKTKFWRSSTAPLPPGTYEPA YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIVNVLEQTIDPPQ KWSFAQACASLDKTTSSGYPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDEFKAHCVTLPIRVG MNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQKVA EDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQA NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLRPTRPDKTEGPLVISEDLNGLTFLR RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALH GPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG VE" CDS 1514..3136 /codon_start=1 /product="VP1" /protein_id="ADR78950.1" /translation="MKMASNDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVLLAGNAFTAGKIIFAAVPPTFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLVAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLERLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTNIPGSRTYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVRTGSADFTPKLGSVQFATDTDNDFVTGQNTRFTPVGVIHDG SSAHRNEPQQWVLPEYSGRSVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" CDS 3136..3942 /codon_start=1 /product="VP2" /protein_id="ADR78951.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGVINQKVDFENNRKLQQD SFKFSSNLQQASFQHDKEMLQAQIEATKKLHQGMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQSSGALPGRANPRATVPARGSPSTPS NTSAVTSVCSNQTVSTRLGSTAGSGTRVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 3943..3988 ORIGIN 1 ggcggtgaca gcaaggggac ctactgcggt gcaccaatct taggtccagg aaatgcccca 61 aagctcagca ccaagactaa attctggaga tcatccacgg caccactccc acctggtacc 121 tatgagccag cctacctcgg cggcaaggac cccagagtta agggtggccc ttcattgcaa 181 caagttatga gggaccagct gaaaccattc actgaaccta ggggtaaacc accaaaacca 241 agtgtattag aagctgccaa gaaaaccatc gtcaatgtcc ttgaacaaac aattgatcca 301 cctcaaaaat ggtcatttgc gcaggcatgc gcatcccttg acaagaccac ttccagtggt 361 tatccgcacc acatgcggaa aaacgactgc tggaacgggg aatcctttac aggcaaattg 421 gcagaccagg cttccaaggc caacctgatg ttcgaggaag gaaagaacat gaccccagtc 481 tacacgggtg cgcttaagga cgagctggtc aagactgaca aaatttatgg caagatcaaa 541 aagagacttc tctggggttc ggacctggcg accatgatcc ggtgcgctcg agcattcggg 601 ggcctgatgg atgaattcaa agcacattgt gtcacactac ctatcagagt gggtatgaat 661 atgaatgagg atggtcctat catctttgag aaacactcca gatataaata ccattatgat 721 gctgattact cccggtggga ctcaacacaa caaagagccg tgttagcagc ggctttagaa 781 atcatggtca agttctcccc agagccgcat ctggcccaaa aggttgcaga agaccttctt 841 tctcccagcg tgatggacgt gggtgatttt aaaatatcaa tcaatgaggg tctcccctcc 901 ggggtgccct gcacctccca atggaattcc atcgcccact ggctcctcac tctatgtgca 961 ctctctgagg ttacaaacct gtcccctgac attatccagg ccaactctct cttttctttc 1021 tacggtgatg atgaaattgt gagcacagac ataaaactgg acccagaaaa gctgacagca 1081 aaactcaagg aatacgggtt gagaccgacc cgccccgaca agactgaggg accccttgtt 1141 atctctgaag acctgaatgg cctaaccttc ctgcggagga ccgtgacccg cgacccagca 1201 ggctggtttg gaaagttgga acagagttca atactcagac aaatgtattg gactaggggc 1261 cccaaccatg aagacccatc tgaaacaatg ataccacact cccagaggcc catacaattg 1321 atgtctttgc tgggtgaggc tgcactccac ggcccagcat tctacagcaa aatcagcaaa 1381 ctggtcattg cagagttgaa ggaaggtggc atggattttt acgtgccaag acaagagcca 1441 atgttcagat ggatgagatt ctcggatctg agcacgtggg agggcgatcg caatctggct 1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccagc ccatctgatg ggtccgcagc 1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc 1621 tattgcggca cctgtggcgg gccaacaaaa tgtaattgac ccctggatta ggaataattt 1681 tgtacaagcc cctggtggag agttcacagt gtcccctaga aacgctccag gtgaaatact 1741 atggagcgcg cccttaggtc ctgatctgaa cccatacctt tctcacctgg ccagaatgta 1801 caatggttat gcaggtggtt ttgaagtgca ggtactcctc gcggggaacg cgttcaccgc 1861 cgggaaaatc atatttgcag cagtcccacc aacttttcca actgaaggct tgagccccag 1921 ccaggtcact atgttccccc acataatagt agatgttagg caattggaac ctgtgttgat 1981 ccccttacct gatgttagga ataatttcta ccattacaat caatcaaatg actccaccat 2041 taaattggta gcaatgctgt acacaccact tagggctaat aatgctgggg atgatgtctt 2101 cacagtctct tgtcgagtcc tcacgaggcc atcccccgat tttgatttta tatttctggt 2161 gccacccaca gttgagtcaa gaaccaaacc attcaccgtc ccaattttaa ctgttgagga 2221 aatgaccaat tcaagattcc ccattccttt ggaaagattg ttcacgggtc ccagcagtgc 2281 ctttgttgtc caaccacaaa atggcaggtg cacgactgac ggcgtgctct taggcactac 2341 ccaactgtcc cccgtcaaca tctgcacctt cagaggcgat gtcaccaaca ttccaggttc 2401 tcgtacttac agaatgaatt tggcttctca aaattggaac aattatgacc caacggaaga 2461 aatcccagcc cctctgggaa ctccagattt cgtgggaaag atccaaggcg tgctcaccca 2521 aaccacaaag ggagacggct cgacccgcgg tcacaaagct acagtgagaa ctgggagtgc 2581 tgattttact ccaaagctgg gcagcgttca gttcgccact gatacagaca atgattttgt 2641 aaccggccaa aacacaaggt tcaccccagt cggtgtcatc catgatggta gtagtgccca 2701 cagaaatgaa ccccaacaat gggtactccc agaatactca ggtagatctg ttcataatgt 2761 acacctagcc cctgccgtag cccccacttt tccgggtgag caacttcttt tcttcagatc 2821 tactatgccc ggatgcagtg ggtatcccaa tatggatttg gattgtctac tcccccagga 2881 atgggtgcag cacttctacc aagaggcagc cccgtcacaa tctgatgtgg ctttgctgag 2941 atttgtgaat ccggacacag gtagggttct gtttgagtgc aagcttcata aagcaggcta 3001 tgtcacagtg gctcacactg gccagcatga tttggttatc cctcccaatg gctactttag 3061 atttgattcc tgggtcaacc agttctacac acttgccccc atgggaaatg gagcggggcg 3121 tagacgtgca ttataatggc tggagctttc tttgctggat tggcatctga tgtccttggc 3181 tctggactcg gttccctgat caatgctggg gctggggtca ttaaccaaaa agttgatttt 3241 gaaaataaca gaaagttgca acaagattcc ttcaaattta gcagcaatct acaacaggct 3301 tcctttcaac atgacaaaga gatgctccaa gcacaaattg aggccactaa aaagttacat 3361 cagggtatga tgaaagtcaa acaggcaatg ctcctagagg gtggattctc tgaaacagat 3421 gcggcccgtg gggcaatcaa tgcccccatg acaaaggctt tggactggag cggaacaagg 3481 tactgggctc ctgatgctag aactacaaca tacaatgcag gccgtttttc cacccctcaa 3541 tcttcggggg cactgccagg aagagctaat cctagggcca ctgtccccgc tcggggctcc 3601 cccagcacac cttctaacac ttctgctgtt acttctgtct gttcaaatca aactgtttca 3661 acgaggcttg gttctacagc tggttctggc accagagtct cgagtctccc gtcaactgca 3721 aggactagga gctgggttga ggatcaaaac aggaatttgt cacctttcat gaggggggct 3781 cacaacatat cgttcgtcac cccaccatct agtagatcct ctagccaagg cacagtctca 3841 accgtgccca aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct 3901 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg 3961 attatcttcc ttttctttag tgtctttt //