Typing tool
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Typing tool
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Complete norovirus genomes
| HM802549 | GII.4 Asia | |
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| GII.P12 |
ORF1: 1..1533
ORF2: 1514..3136
ORF3: 3136..3942
LOCUS HM802549 3988 bp RNA linear VRL 05-JAN-2012
DEFINITION Norovirus Hu/GII.4/Hong Kong/CU050136/2005/CHN RNA-dependent RNA
polymerase gene, partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION HM802549
VERSION HM802549.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Hong Kong/CU050136/2005/CHN
ORGANISM Norovirus Hu/GII.4/Hong Kong/CU050136/2005/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3988)
AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and
Sung,J.J.
TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus
Genogroup II Genotype 4 Strains
JOURNAL J. Virol. 86 (2), 1227-1232 (2012)
PUBMED 22072750
REFERENCE 2 (bases 1 to 3988)
AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese
University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of
Wales Hospital, Shatin, Hong Kong, China
FEATURES Location/Qualifiers
source 1..3988
/organism="Norovirus Hu/GII.4/Hong Kong/CU050136/2005/CHN"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Hong Kong/CU050136/2005/CHN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:932933"
/geo_loc_name="Hong Kong"
/collection_date="Jan-2005"
CDS <1..1533
/note="RdRp"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ADR78937.1"
/translation="GGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPA
YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIVNVLEQTIDPPQ
KWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV
YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMEELKAHCVTLPVRVG
MNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQKVA
EDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQA
NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLR
RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALH
GPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG
VE"
CDS 1514..3136
/codon_start=1
/product="VP1"
/protein_id="ADR78938.1"
/translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGTRSYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTKRDGSTRGHKATVSTGSVDFTPKLGSVQFATDTDNDFETGQNTRFTPVGVIQDG
SSTHRNEPQQWVLPDYSGRTVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 3136..3942
/codon_start=1
/product="VP2"
/protein_id="ADR78939.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFEFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGSPSTPS
NTTTVTSVYSDQTVSTRLGSTAGSGTRVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 3943..3988
ORIGIN
1 ggcggtgaca gcaaggggac ctactgcggt gcaccaatct taggtccagg aagtgcccca
61 aagctcagca ccaagactaa attctggaga tcatccacgg caccactccc acctggtacc
121 tatgagccag cctacctcgg cggcaaggac cccagagtta agggtggccc ttcattgcaa
181 caagttatga gggaccagct gaaaccattc actgaaccca ggggtaaacc accaaaacca
241 agtgtgttag aagctgccaa gaaaaccatc gtcaatgtcc ttgaacaaac aattgatcca
301 cctcaaaaat ggtcatttgc gcaggcatgc gcatcccttg acaagaccac ttccagtggt
361 cacccgcacc acatgcggaa aaacgactgc tggaacgggg aatcctttac aggcaaattg
421 gcagaccagg cttccaaggc caacctgatg ttcgaggagg gaaagaacat gaccccagtc
481 tacacgggtg cgcttaagga cgagctggtc aagactgaca aaatttatgg caagatcaaa
541 aagaggcttc tctggggttc ggacctggcg accatgatcc ggtgcgctcg agcattcggg
601 ggcctgatgg aggaactcaa agcacattgt gtcacactac ctgtcagagt gggtatgaat
661 atgaatgagg atggtcctat catctttgag agacactcca gatataaata ccattatgat
721 gctgattact cccggtggga ctcaacacaa caaagagccg tgttagcagc ggctttagaa
781 atcatggtca agttttctcc agagccgcat ctggcccaaa aggttgcaga agaccttctt
841 tctcccagcg tgatggacgt gggtgatttc aaaatatcaa tcaatgaggg cctcccctcc
901 ggggtgccct gcacctccca atggaattcc atcgcccact ggctcctcac tctatgtgca
961 ctctctgagg ttacaaacct gtcccctgac attatccagg ccaactctct cttttctttc
1021 tatggtgatg atgaaattgt gagcacagac ataaaattgg acccagaaaa gctgacagca
1081 aaactcaagg aatacgggtt gaaaccaacc cgccctgata agactgaggg accccttgtt
1141 atctctgaag acctgaatgg cctaaccttc ctgcggagga ccgtgacccg cgacccagca
1201 ggctggtttg gaaagttgga gcagagttca atactcagac aaatgtattg gactaggggc
1261 cccaaccacg aagacccatc tgaaacaatg ataccacact cccagaggcc catacaattg
1321 atgtctttgc tgggtgaggc tgcactccac ggcccagcat tctacagcaa aatcagcaaa
1381 ctggtcattg cagagttgaa ggaaggtggc atggattttt acgtgccaag acaagagcca
1441 atgttcagat ggatgagatt ctcggatctg agcacgtggg agggcgatcg caatctggct
1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccagc ccatctgatg ggtccacagc
1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc
1621 tattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta ggaataattt
1681 tgtacaagct cctggtggag agttcacagt atcccctaga aacgctccag gtgaaatact
1741 atggagcgcg cccttaggcc ctgatctgaa tccatacctt tctcacctgg ccagaatgta
1801 caatggttat gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc
1861 cgggaaaatc atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag
1921 ccaggtcact atgttccccc acataatagt agatgttagg caattggaac ctgtgttgat
1981 ccccttaccc gatgttagga ataatttcta ccattacaat caatcaaatg actccaccat
2041 taaattgata gcaatgctgt acacaccact tagggctaat aatgctgggg atgatgtctt
2101 cacagtctct tgtcgagtcc tcacgaggcc atcccccgat tttgatttca tatttctggt
2161 gccacccaca gttgagtcaa gaaccaaacc attcaccgtc ccaattttaa ctgttgagga
2221 aatgaccaat tcaagattcc ccattccttt ggaaaaattg ttcacgggtc ccagcagtgc
2281 ctttgtcgtc caaccacaaa atggcaggtg cacgactgat ggcgtgctct taggcactac
2341 ccaattgtcc cccgtcaaca tctgcacctt cagaggcgat gtcacccaca ttccaggtac
2401 ccgttcttac agaatgaatt tggcttctca aaattggaac aattatgacc caacagaaga
2461 aatcccagcc cctctgggaa ctccagattt cgtgggaaag atccaaggca tgctcaccca
2521 aaccacaaag agagacggct cgacccgcgg tcacaaagct acagtgagca ctgggagtgt
2581 tgactttact ccaaagctgg gcagcgttca gttcgccact gatacagaca atgattttga
2641 aactggccaa aacacaaggt tcaccccagt cggtgtcatt caggatggta gtagtaccca
2701 cagaaatgaa ccccaacaat gggtactccc agattattca ggtagaactg ttcataatgt
2761 acacctggcc cctgccgtag cccccacttt tccgggtgag caacttcttt tcttcagatc
2821 tactatgccc ggatgcagtg ggtatcccaa tatggatttg gattgtctac tcccccagga
2881 atgggtgcag cacttctacc aagaggcagc cccatcacaa tctgatgtgg ctttgttgag
2941 attcgtgaat ccagacacag gtagggttct gtttgagtgc aagcttcata aagcaggcta
3001 tgtcacagtg gctcacactg gccagcatga tttggttatc ccccccaatg gctactttag
3061 atttgattcc tgggtcaacc agttctacac acttgccccc atgggaaatg gagcggggcg
3121 tagacgtgca ttataatggc tggagctttc tttgctggat tggcatctga tgttcttggc
3181 tctggacttg gttccctgat caatgctggg gctggggcca tcaaccaaaa agttgaattt
3241 gaaaataaca gaaaattgca acaagcttcc ttcgaattta gcagcaatct acaacaggct
3301 tcctttcaac acgacaaaga gatgctccaa gcacaaattg aggccactaa gaagttacag
3361 cagggtatga tgaaagtcaa acaggcaatg ctccttgagg gtggattctc tgaaacagat
3421 gcggcccgtg gggcaatcaa cgcccccatg acaaaggctt tggactggag cggaacaagg
3481 tactgggctc ctgatgctag aaccacaaca tacaatgcag gccgtttttc cacccctcaa
3541 ccttcggggg cactgccagg aagaactaat cccagggcta ctgtccccgc tcggggctcc
3601 cccagcacac cttctaacac tactactgtt acttctgtct attcagatca aactgtttca
3661 acgagacttg gttctacagc tggttctggc accagagtct cgagtctccc gtcaactgca
3721 aggactagga gctgggttga ggatcaaaac agaaatttgt cacctttcat gaggggggct
3781 cacaacatat cgttcgtcac cccaccatct agtagatcct ctagccaagg cacagtctca
3841 accgtgccca aagaagtttt ggactcctgg actggcgctt ttaacacgcg caggcagcct
3901 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg
3961 attatctttc ttttctttac tgtctttt
//