Typing tool
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Complete norovirus genomes
HM802547 | GII.4 Asia | ||
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GII.P12 |
ORF1: 1..1533 ORF2: 1514..3136 ORF3: 3136..3942LOCUS HM802547 3988 bp RNA linear VRL 05-JAN-2012 DEFINITION Norovirus Hu/GII.4/Hong Kong/CU041225/2004/CHN RNA-dependent RNA polymerase gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION HM802547 VERSION HM802547.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Hong Kong/CU041225/2004/CHN ORGANISM Norovirus Hu/GII.4/Hong Kong/CU041225/2004/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3988) AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and Sung,J.J. TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus Genogroup II Genotype 4 Strains JOURNAL J. Virol. 86 (2), 1227-1232 (2012) PUBMED 22072750 REFERENCE 2 (bases 1 to 3988) AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y. TITLE Direct Submission JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of Wales Hospital, Shatin, Hong Kong, China FEATURES Location/Qualifiers source 1..3988 /organism="Norovirus Hu/GII.4/Hong Kong/CU041225/2004/CHN" /mol_type="genomic RNA" /strain="Hu/GII.4/Hong Kong/CU041225/2004/CHN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:932929" /country="Hong Kong" /collection_date="Dec-2004" CDS <1..1533 /note="RdRp" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ADR78931.1" /translation="GGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPA YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIVNVLEQTIDPPQ KWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMEELKAHCVTLPVRVG MNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQKVA EDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQA NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLR RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALH GPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG VE" CDS 1514..3136 /codon_start=1 /product="VP1" /protein_id="ADR78932.1" /translation="MKMASSDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHISGSRNYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTKGDGSTRGHKATVSTGSVDFTPKLGSVQFATDTDNDFETGQNTRFTPVGVIQDG SSAHRNEPQQWVLPDYSGRTVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" CDS 3136..3942 /codon_start=1 /product="VP2" /protein_id="ADR78933.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFEFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGGFSTPQSSGALPGRTNPRATVPARGSPSTPS NTPTVTSVYSDQTVSTRLGSTAGSGTRVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 3943..3988 ORIGIN 1 ggcggtgaca gcaaggggac ctactgcggt gcaccaatct taggtccagg aagtgcccca 61 aagctcagca ccaagactaa attctggaga tcatccacgg caccactccc acctggtacc 121 tatgagccag cctacctcgg cggcaaggac cccagagtta agggtggccc ttcattgcaa 181 caagttatga gggaccagct gaaaccattc actgaaccca ggggtaaacc accaaaacca 241 agtgtgttag aagctgccaa gaaaaccatc gtcaatgtcc ttgaacaaac aattgatcca 301 cctcaaaaat ggtcatttgc gcaggcatgc gcatcccttg acaagaccac ttccagtggt 361 cacccgcacc acatgcggaa gaacgactgc tggaacgggg aatcctttac aggcaaattg 421 gcagaccagg cttccaaggc caacctgatg ttcgaggagg gaaagaacat gaccccagtc 481 tacacgggtg cgcttaagga cgagctggtt aagactgaca agatttatgg caagatcaaa 541 aagaggcttc tctggggttc ggacctggcg accatgatcc ggtgcgctcg agcattcggg 601 ggcctgatgg aggaactcaa agcacattgt gtcacactac ctgtcagagt gggtatgaat 661 atgaatgagg atggtcctat catctttgag agacactcca gatataaata ccattatgat 721 gctgattact cccggtggga ctcaacacaa caaagagccg tgttagcagc ggctttagaa 781 atcatggtca agttctcccc agagccgcat ctggcccaaa aggttgcaga agaccttctc 841 tctcccagcg tgatggacgt gggtgatttc aaaatatcaa tcaatgaggg tctcccctcc 901 ggggtgccct gcacctccca atggaattcc atcgcccact ggctcctcac tctatgtgca 961 ctctctgagg ttacaaacct gtcccctgac attatccagg ccaactctct cttttctttc 1021 tacggtgatg atgaaattgt gagcacagac ataaaattgg acccagaaaa gctgacagca 1081 aaactcaagg aatacgggtt gaaaccgacc cgccctgaca agactgaggg accccttgtt 1141 atctctgaag acctgaatgg cctaaccttc ctgcggagga ccgtgacccg cgacccagca 1201 ggctggtttg gaaagttgga acagagttca atactcagac aaatgtattg gactaggggc 1261 cccaaccatg aagacccatc tgaaacaatg ataccacact cccagaggcc catacaattg 1321 atgtctttgc tgggtgaggc tgcactccac ggcccagcat tctacagcaa aatcagcaaa 1381 ctggtcattg cagagttgaa ggaaggtggc atggattttt acgtgccaag acaagagcca 1441 atgttcagat ggatgagatt ctcggatctg agcacgtggg agggcgatcg caatctggct 1501 cccagttttg tgaatgaaga tggcgtcgag tgacgccagc ccatctgatg ggtccgcagc 1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc 1621 tattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta ggaataattt 1681 tgtacaagcc cctggtggag agttcacagt atcccctaga aacgctccag gtgaaatact 1741 atggagcgcg cccttaggcc ctgatctgaa cccatacctt tctcacctgg ccagaatgta 1801 caatggttat gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc 1861 cgggaaaatc atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag 1921 ccaggtcact atgttccccc atataatagt agatgttagg caattggaac ctgtgttgat 1981 ccccttacct gatgttagga ataatttcta ccattacaat caatcaaatg actccaccat 2041 taaattgata gcaatgctgt acacaccact tagggctaat aatgctgggg atgatgtctt 2101 cacagtctct tgtcgagtcc tcacgaggcc atcccccgat tttgatttca tatttctggt 2161 gccacccact gttgagtcaa gaaccaaacc attcaccgtc ccaattttaa ctgttgagga 2221 aatgaccaat tcaagattcc ccattccttt ggaaaaattg ttcacgggtc ccagcagtgc 2281 ctttgtcgtc caaccacaaa atggcaggtg cacgactgat ggcgtgctct taggcactac 2341 ccaactgtcc cccgtcaaca tctgcacctt cagaggcgat gtcacccaca tttcaggttc 2401 tcgtaattac agaatgaatt tggcttctca aaattggaac aattatgacc caacagaaga 2461 aatcccagcc cctctgggaa ctccagattt cgtgggaaag atccaaggca tgctcaccca 2521 aaccacaaag ggagacggct cgacccgcgg tcacaaagct acagtgagca ctgggagtgt 2581 tgactttact ccaaagctgg gcagcgttca gttcgccact gatacagaca atgattttga 2641 aactggccaa aacacaaggt tcaccccagt cggtgttatc caggatggta gtagtgccca 2701 cagaaatgaa ccccaacaat gggtactccc agattactca ggcagaactg ttcataatgt 2761 acacctagcc cctgctgtag cccccacttt tccgggtgag caacttcttt tcttcagatc 2821 tactatgccc ggatgtagtg ggtatcccaa tatggatttg gattgtctac tcccccagga 2881 atgggtgcag cacttctacc aagaggcagc cccatcacaa tctgatgtgg ctttgctgag 2941 atttgtgaat ccagacacag gtagggttct gtttgagtgc aagcttcata aagcaggcta 3001 tgtcacagtg gctcacactg gccagcatga tttggttatc ccccccaatg gctactttag 3061 atttgattcc tgggtcaacc agttctacac acttgccccc atgggaaatg gagcggggcg 3121 tagacgtgca ttataatggc tggagctttc tttgctggat tggcatctga tgtccttggc 3181 tctggacttg gttccctgat caatgctggg gctggggcca tcaaccaaaa agttgaattt 3241 gaaaataaca gaaaactgca acaagcttcc ttcgaattta gcagtaatct acaacaggct 3301 tcctttcaac atgacaaaga gatgctccaa gcacaaattg aggccactaa aaagttacag 3361 cagggtatga tgaaagtcaa acaggcaatg ctcctagagg gtggattctc tgaaacagat 3421 gcggcccgtg gggcaatcaa cgcccccatg acaaaggctt tggactggag cggaacaagg 3481 tactgggctc ctgatgctag aaccacaaca tacaatgcag gcggtttttc cacccctcaa 3541 tcttcggggg cactgccagg aagaactaat cccagggcta ctgtccccgc tcggggctcc 3601 cccagcacac cttctaacac tcctactgtt acttctgtct attcagatca aactgtttca 3661 acgagacttg gttctacagc tggttctggc accagagtct cgagtctccc gtcaactgca 3721 aggactagga gctgggttga ggatcaaaac aggaatttgt cacctttcat gaggggggct 3781 cacaacatat cgttcgtcac cccaccatct agtagatcct ctagccaagg cacagtctca 3841 accgtgccca aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct 3901 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg 3961 attatcttcc ttttctttag tgtctttt //