Typing tool
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Complete norovirus genomes
HM802546 | GII.4 Asia | ||
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GII.P12 |
ORF1: 1..1533 ORF2: 1514..3136 ORF3: 3136..3942LOCUS HM802546 3988 bp RNA linear VRL 05-JAN-2012 DEFINITION Norovirus Hu/GII.4/Hong Kong/CU041206/2004/CHN RNA-dependent RNA polymerase gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION HM802546 VERSION HM802546.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Hong Kong/CU041206/2004/CHN ORGANISM Norovirus Hu/GII.4/Hong Kong/CU041206/2004/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3988) AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and Sung,J.J. TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus Genogroup II Genotype 4 Strains JOURNAL J. Virol. 86 (2), 1227-1232 (2012) PUBMED 22072750 REFERENCE 2 (bases 1 to 3988) AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y. TITLE Direct Submission JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of Wales Hospital, Shatin, Hong Kong, China FEATURES Location/Qualifiers source 1..3988 /organism="Norovirus Hu/GII.4/Hong Kong/CU041206/2004/CHN" /mol_type="genomic RNA" /strain="Hu/GII.4/Hong Kong/CU041206/2004/CHN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:932926" /country="Hong Kong" /collection_date="Dec-2004" CDS <1..1533 /note="RdRp" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ADR78928.1" /translation="GGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPA YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPNVLEAAKKTIVNVLEQTIDPPQ KWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMEELKAHCVTLPVRVG MNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQKVA EDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQA NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLR RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALH GPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG VE" CDS 1514..3136 /codon_start=1 /product="VP1" /protein_id="ADR78929.1" /translation="MKMASNDASPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHISGTRTYRMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTKGDGSTRGHKATVSTGSVDFTPKLGSVQFATDTDNDFETGQNTRFTPVGVIQDG SSAHRNEPQQWVLPDYSGRTVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPSQSDVALLRFVNPDTGRVLFECKLHKAGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" CDS 3136..3942 /codon_start=1 /product="VP2" /protein_id="ADR78930.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFEFSSNLQQASFQHDKEMLQAQIEATKKLQQGMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNPRATVPARGSPSTPS NTSTVTSVYSDQTVSTRLGSTAGSGTRVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 3943..3988 ORIGIN 1 ggcggtgaca gcaaggggac ctactgcggt gcaccaatct taggtccagg aagtgcccca 61 aagctcagca ccaagactaa attctggaga tcgtccacgg caccactccc acctggtacc 121 tatgagccag cctacctcgg tggcaaggac cccagagtta agggtggccc ttcattgcaa 181 caagttatga gggaccagct gaaaccattc actgaaccca ggggtaaacc accaaaacca 241 aatgtgttag aagctgccaa gaaaaccatc gtcaatgtcc ttgaacaaac aattgatcca 301 cctcaaaaat ggtcatttgc gcaggcatgc gcatcccttg acaagaccac ttccagtggt 361 cacccgcacc acatgcgaaa aaatgactgc tggaacgggg aatccttcac aggcaaattg 421 gcagaccagg cttccaaggc caacctgatg tttgaggagg gaaagaacat gaccccagtc 481 tacacgggtg cgcttaagga cgagctggtc aagactgaca aaatttatgg caagatcaaa 541 aagaggcttc tctggggttc ggacctggcg accatgatcc ggtgcgctcg agcattcggg 601 ggcctgatgg aggaactcaa agcacattgt gtcacactac ctgtcagagt gggtatgaat 661 atgaatgagg atggtcctat catctttgag agacactcta gatataaata ccattatgat 721 gctgattact cccggtggga ctcaacacaa caaagagccg tgctagcagc ggctttagaa 781 atcatggtca agttctcccc agagccgcat ctggcccaaa aggttgcaga agaccttctt 841 tctcccagcg tgatggacgt gggtgatttc aaaatatcaa tcaatgaggg tctcccctcc 901 ggggtgccct gcacctccca atggaattcc atcgcccact ggctcctcac tctatgtgca 961 ctctctgagg ttacaaacct gtcccctgac attatccagg ccaactctct cttttctttc 1021 tacggtgatg atgaaattgt gagcacagac ataaaattgg acccagaaaa gctgacagca 1081 aaactcaaag aatacgggtt gaaaccgacc cgccctgaca agactgaggg accccttgtt 1141 atctctgaag acctgaatgg cctaaccttc ctgcggagga ccgtgacccg cgatccagca 1201 ggctggtttg gaaagttgga acagagttca atactcagac aaatgtattg gactaggggc 1261 cccaaccatg aagacccatc tgaaacaatg ataccacact cccagaggcc catacaattg 1321 atgtctttgc tgggtgaggc tgcactccac ggcccagcat tctacagcaa aatcagcaaa 1381 ctggtcattg cagagttgaa ggaaggtggc atggattttt acgtgccaag acaagagcca 1441 atgttcagat ggatgagatt ctcggatctg agcacgtggg agggcgatcg caatctggct 1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccagc ccatctgatg ggtccacagc 1561 caatctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc 1621 tattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta ggaataattt 1681 tgtacaagcc cctggtggag agttcacagt atcccctaga aacgctccag gtgaaatact 1741 atggagcgcg cccttaggcc ctgatctgaa tccatacctt tctcacctgg ccagaatgta 1801 caatggttat gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc 1861 cgggaaaatc atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag 1921 ccaggtcact atgttccccc atataatagt agatgttagg caattggaac ctgtgttgat 1981 ccccttacct gatgttagga ataatttcta tcattacaat caatcaaatg actccaccat 2041 taaattgata gcaatgctgt acacaccact tagggctaat aatgctgggg atgacgtctt 2101 cacagtctct tgtcgagtcc tcacgaggcc atcccccgat tttgatttca tatttctggt 2161 gccacccaca gttgagtcaa gaaccaaacc attcaccgtc ccaatcttaa ctgttgagga 2221 aatgaccaat tcaagattcc ccattccttt ggaaaaattg ttcacgggtc ccagcagtgc 2281 ctttgtcgtc caaccacaaa atggcaggtg cacgactgat ggcgtgctct taggcactac 2341 ccaactgtcc cccgtcaaca tctgcacctt cagaggcgat gtcacccaca tttcaggcac 2401 tcgtacttac aggatgaatt tggcttctca aaattggaac aattatgacc caacagaaga 2461 aatcccagcc cctctgggaa ccccagattt cgtgggaaag atccaaggca tgctcaccca 2521 aaccacaaag ggagacggct cgacccgcgg tcacaaagct acagtgagca ctgggagtgt 2581 tgactttact ccaaagctgg gcagcgttca gttcgccact gatacagaca atgattttga 2641 aactggccaa aacacaaggt tcaccccagt cggtgtcatc caggatggta gtagtgccca 2701 cagaaatgaa ccccaacaat gggtactccc agattactca ggtagaactg ttcataatgt 2761 acacctagcc cctgccgtag cccccacttt tccgggtgag caacttcttt tcttcagatc 2821 tactatgccc ggatgcagtg ggtatcccaa tatggatttg gattgtctac tcccccagga 2881 atgggtgcag cacttctacc aagaggcagc cccatcacaa tctgatgtgg ctttgctgag 2941 atttgtgaat ccagacacag gtagggttct gtttgagtgc aagcttcata aagcaggcta 3001 tgtcacagtg gctcatactg gccagcatga tttggttatc ccccccaatg gttactttag 3061 atttgattcc tgggtcaacc agttctacac acttgccccc atgggaaatg gagcggggcg 3121 tagacgtgca ttataatggc tggagctttc ttcgctggat tggcatctga tgtccttggc 3181 tctggacttg gttccctgat caatgctggg gctggggcca tcaaccaaaa agttgaattt 3241 gaaaataaca gaaaattgca acaagcttcc ttcgaattta gcagcaatct acaacaggct 3301 tcctttcaac atgacaaaga gatgctccaa gcacaaattg aggccactaa aaagttacag 3361 cagggtatga tgaaagtcaa acaggcaatg ctcctagagg gtggattctc tgaaacagat 3421 gcggcccgtg gggcaatcaa cgcccccatg acaaaggctt tggactggag tggaacaagg 3481 tactgggctc ctgatgctag aactacaaca tacaatgcag gccgtttttc cacccctcaa 3541 ccttcggggg cactgccagg aagaactaat cccagggcta ctgtccccgc tcggggctcc 3601 cccagcacac cttctaatac ttctactgtt acttctgtct attcagatca aactgtttca 3661 acgagacttg gttctacagc tggttctggc accagagtct cgagtctccc gtcaactgca 3721 aggactagga gctgggttga ggatcaaaac aggaatttgt cacctttcat gaggggggct 3781 cacaacatat cgttcgtcac cccaccatct agtagatcct ctagccaagg cacagtctca 3841 accgtgccca aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct 3901 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg 3961 gttatcttcc ttttctttag tgtctttt //