Typing tool
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Typing tool
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Complete norovirus genomes
| HM802540 | GII.4 Hunter | |
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| GII.P4 Apeldoorn |
ORF1: 1..1533
ORF2: 1514..3136
ORF3: 3136..3942
LOCUS HM802540 3989 bp RNA linear VRL 05-JAN-2012
DEFINITION Norovirus Hu/GII.4/Hong Kong/CU050141/2005/CHN RNA-dependent RNA
polymerase gene, partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION HM802540
VERSION HM802540.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Hong Kong/CU050141/2005/CHN
ORGANISM Norovirus Hu/GII.4/Hong Kong/CU050141/2005/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3989)
AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and
Sung,J.J.
TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus
Genogroup II Genotype 4 Strains
JOURNAL J. Virol. 86 (2), 1227-1232 (2012)
PUBMED 22072750
REFERENCE 2 (bases 1 to 3989)
AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese
University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of
Wales Hospital, Shatin, Hong Kong, China
FEATURES Location/Qualifiers
source 1..3989
/organism="Norovirus Hu/GII.4/Hong Kong/CU050141/2005/CHN"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Hong Kong/CU050141/2005/CHN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:932935"
/geo_loc_name="Hong Kong"
/collection_date="Jan-2005"
CDS <1..1533
/note="RdRp"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ADR78910.1"
/translation="GGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTASLPPGTYEPA
YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPE
KWSFAQACASLDKTTSSGHPHHTRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV
YTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRVG
MNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVA
EDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQA
NSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLR
RTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAALH
GPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG
VE"
CDS 1514..3136
/codon_start=1
/product="VP1"
/protein_id="ADR78911.1"
/translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQLSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 3136..3942
/codon_start=1
/product="VP2"
/protein_id="ADR78912.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAVN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGASSGRTNLRATVPARGSSSTPF
NASTATSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 3943..3989
ORIGIN
1 ggtggtgaca ataaagggac atactgtggt gcaccaatcc taggcccagg gagtgcccca
61 aaacttagca ccaagaccaa gttctggaga tcgtccacag catcactccc acctggcacc
121 tatgaaccag cctatcttgg tggcaaggac cccagagtca agggtggccc ttcactgcag
181 caagtcatga gggatcagtt gaagccattt acagagccca ggggcaagcc accaaagcca
241 agtgtgttgg aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgatcca
301 cctgagaaat ggtcattcgc acaagcttgc gcgtcccttg acaagaccac ttccagtggc
361 catccgcatc acacgcggaa aaacgactgc tggaacgggg agtccttcac aggcaagctg
421 gcagaccagg cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtc
481 tacacagctg cgcttaagga tgaattagtt aaaactgaca aaatttatgg taagatcaaa
541 aagaggcttc tctggggctc ggatttggcg accatgattc ggtgtgctcg agcattcgga
601 ggcctaatgg atgaactcaa agcgcactgt gtcacacttc ccattagagt tggtatgaat
661 atgaatgagg atggccccat tatcttcgag aggcattcca ggtacacata ccactatgat
721 gctgattact ctcgatggga ttcaacacaa cagagagccg tgttggcagc agctctagaa
781 atcatggtta aattctcccc agaaccacat ttggctcagg tagtcgcaga agaccttctt
841 tctcctagcg tggtggacgt gggtgacttc acaatatcaa tcaacgaggg tcttccctct
901 ggggtgccct gcacctccca atggaactcc atcgctcact ggcttctcac tctctgtgcg
961 ctctctgaag ttacaaactt gtctcctgac accatacagg ctaattccct cttctctttt
1021 tatggtgatg atgaaattgt tagcacagac ataaaattgg acccagagaa gttgacagca
1081 aagctcaggg aatatgggtt aaagccaacc cgccctgaca aaactgaagg accccttgtc
1141 atctctgaag acttgaatgg cctgactttc ctgcggagaa ctgtgacccg cgacccagct
1201 ggttggtttg gaaaattgga gcagagttca atactcaggc aaatgtactg gactaggggt
1261 tccaaccatg aagacccatc tgaaacaatg attccacact cccaaagacc catacaattg
1321 atgtccctac tgggggaggc cgcactccac ggcccagcat tctacagcaa aatcagcaag
1381 ttagtcattg cagagctaaa agaaggtggc atggattttt acgtgcccag acaagagcca
1441 atgttcagat ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct
1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccacc ccatctgatg ggtccacagc
1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc
1621 gattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaataattt
1681 tgtacaagcc cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatatt
1741 atggagcgcg cccttgggcc ctgatttgaa tccctacctt tcccatttgg ccagaatgta
1801 caatggttat gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc
1861 cgggaaaatc atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag
1921 ccaggtcact atgttccccc atataatagt agatgttagg caactggaac ctgtgttgat
1981 ccccctgcct gatgttagga ataatttcta tcattacaat caatcaaatg accccaccat
2041 caaattgata gcaatgctgt atacaccact tagggctaac aatgctgggg acgatgtctt
2101 cacagtctct tgtcgagttc tcacgagacc atcccccgat tttgatttca tatttttggt
2161 gccacccaca gttgagtcaa gaactaaacc attctctgtc ccaatcttaa ctgttgagga
2221 gatgaccaat tcaagattcc ctattccttt ggaaaagttg ttcacgggtc ccagcagtgc
2281 ctttgttgtt caaccacaaa atggcagatg cacgactgat ggcgtgcttt taggtactac
2341 ccagctgtct cctgtcaaca tctgcacctt cagaggggat gtcacccaca ttgcaggtac
2401 tcaaaattac acaatgaatc tggcctccca aaattggaac aattatgacc caacagaaga
2461 aatcccagct cctctgggaa ccccagattt tgtaggaaag atccaaggcg tgctcaccca
2521 aaccacaagg agggacggct cgacccgcgg tcacaaagcc acagtaagca ctggaagtgt
2581 ccacttcacc ccaaagctgg gcagtgtcca actctctact gatacaagca atgactttga
2641 aactggccaa aacacgagat tcaccccagt cggtgtcgtc caggatggta gtaccaccca
2701 ccaaaatgaa ccccaacaat gggtgctccc agactattca ggtagagata gtcacaatgt
2761 acacctagcc cctgccgtgg cccccacttt tccgggtgag caacttcttt tctttaggtc
2821 cactatgccc ggatgcagcg ggtatcccaa catgaatttg gattgcctac tcccccagga
2881 gtgggtgcag cacttctacc aagagtcagc cccagcacaa tctgatgtgg cactgctgag
2941 atttgtgaat ccagacacag gtagggtttt gtttgagtgc aagcttcata aatcaggcta
3001 tgtaacagtg gctcacactg gccaacatga tttggttatc ccccccaatg gctattttag
3061 atttgattcc tgggtcaacc aattctacac acttgccccc atgggaaatg gagcggggcg
3121 tagacgtgca ttataatggc tggagctttc tttgctggat tggcatctga tgtccttggc
3181 tctggacttg gctctctaat caatgctggg gctggggcca tcaaccaaaa agttgagttt
3241 gaaaataaca gaaaattgca acaagcttcc ttccaattta gcagcaacct acaacaggct
3301 tcctttcaac atgataaaga gatgctccaa gcacaaattg aggccaccaa aaagttgcaa
3361 caggaaatga tgaaagttaa acaggcaatg ctcctagagg gtgggttctc tgagacagat
3421 gcagcccgtg gggcagtcaa cgcccctatg acaaaggctt tggactggag cggaacaagg
3481 tactgggctc ccgatgctag gactacaaca tacaatgcag gccgcttttc cacccctcaa
3541 ccctcggggg catcgtcagg aagaactaat cttagggcta ctgtccccgc tcggggctcc
3601 tccagcacac cctttaatgc ttctactgct acttctgtgt actcaaatca aactgcttca
3661 acgagacttg gttctacagc tggttctggt accagtgtct cgagcctccc gtcaactgca
3721 aggactagga gctgggttga ggatcaaaac aggaatttgt cacctttcat gaggggggcc
3781 cacaacatat cgtttgtcac cccaccatct agtagatcct ctagccaagg cacagtctca
3841 accgtgccta aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct
3901 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacagaaatt
3961 gattatcatt cttttcttca gtgtctttt
//