Typing tool
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Complete norovirus genomes
HM802540 | GII.4 Hunter | ||
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GII.P4 Hunter |
ORF1: 1..1533 ORF2: 1514..3136 ORF3: 3136..3942LOCUS HM802540 3989 bp RNA linear VRL 05-JAN-2012 DEFINITION Norovirus Hu/GII.4/Hong Kong/CU050141/2005/CHN RNA-dependent RNA polymerase gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION HM802540 VERSION HM802540.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Hong Kong/CU050141/2005/CHN ORGANISM Norovirus Hu/GII.4/Hong Kong/CU050141/2005/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3989) AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and Sung,J.J. TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus Genogroup II Genotype 4 Strains JOURNAL J. Virol. 86 (2), 1227-1232 (2012) PUBMED 22072750 REFERENCE 2 (bases 1 to 3989) AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y. TITLE Direct Submission JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of Wales Hospital, Shatin, Hong Kong, China FEATURES Location/Qualifiers source 1..3989 /organism="Norovirus Hu/GII.4/Hong Kong/CU050141/2005/CHN" /mol_type="genomic RNA" /strain="Hu/GII.4/Hong Kong/CU050141/2005/CHN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:932935" /country="Hong Kong" /collection_date="Jan-2005" CDS <1..1533 /note="RdRp" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ADR78910.1" /translation="GGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTASLPPGTYEPA YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPE KWSFAQACASLDKTTSSGHPHHTRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV YTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRVG MNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVA EDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQA NSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLR RTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAALH GPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG VE" CDS 1514..3136 /codon_start=1 /product="VP1" /protein_id="ADR78911.1" /translation="MKMASNDATPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGTQNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRRDGSTRGHKATVSTGSVHFTPKLGSVQLSTDTSNDFETGQNTRFTPVGVVQDG STTHQNEPQQWVLPDYSGRDSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLD CLLPQEWVQHFYQESAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" CDS 3136..3942 /codon_start=1 /product="VP2" /protein_id="ADR78912.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAVN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGASSGRTNLRATVPARGSSSTPF NASTATSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV" 3'UTR 3943..3989 ORIGIN 1 ggtggtgaca ataaagggac atactgtggt gcaccaatcc taggcccagg gagtgcccca 61 aaacttagca ccaagaccaa gttctggaga tcgtccacag catcactccc acctggcacc 121 tatgaaccag cctatcttgg tggcaaggac cccagagtca agggtggccc ttcactgcag 181 caagtcatga gggatcagtt gaagccattt acagagccca ggggcaagcc accaaagcca 241 agtgtgttgg aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgatcca 301 cctgagaaat ggtcattcgc acaagcttgc gcgtcccttg acaagaccac ttccagtggc 361 catccgcatc acacgcggaa aaacgactgc tggaacgggg agtccttcac aggcaagctg 421 gcagaccagg cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtc 481 tacacagctg cgcttaagga tgaattagtt aaaactgaca aaatttatgg taagatcaaa 541 aagaggcttc tctggggctc ggatttggcg accatgattc ggtgtgctcg agcattcgga 601 ggcctaatgg atgaactcaa agcgcactgt gtcacacttc ccattagagt tggtatgaat 661 atgaatgagg atggccccat tatcttcgag aggcattcca ggtacacata ccactatgat 721 gctgattact ctcgatggga ttcaacacaa cagagagccg tgttggcagc agctctagaa 781 atcatggtta aattctcccc agaaccacat ttggctcagg tagtcgcaga agaccttctt 841 tctcctagcg tggtggacgt gggtgacttc acaatatcaa tcaacgaggg tcttccctct 901 ggggtgccct gcacctccca atggaactcc atcgctcact ggcttctcac tctctgtgcg 961 ctctctgaag ttacaaactt gtctcctgac accatacagg ctaattccct cttctctttt 1021 tatggtgatg atgaaattgt tagcacagac ataaaattgg acccagagaa gttgacagca 1081 aagctcaggg aatatgggtt aaagccaacc cgccctgaca aaactgaagg accccttgtc 1141 atctctgaag acttgaatgg cctgactttc ctgcggagaa ctgtgacccg cgacccagct 1201 ggttggtttg gaaaattgga gcagagttca atactcaggc aaatgtactg gactaggggt 1261 tccaaccatg aagacccatc tgaaacaatg attccacact cccaaagacc catacaattg 1321 atgtccctac tgggggaggc cgcactccac ggcccagcat tctacagcaa aatcagcaag 1381 ttagtcattg cagagctaaa agaaggtggc atggattttt acgtgcccag acaagagcca 1441 atgttcagat ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct 1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccacc ccatctgatg ggtccacagc 1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg ttggtgccgc 1621 gattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaataattt 1681 tgtacaagcc cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatatt 1741 atggagcgcg cccttgggcc ctgatttgaa tccctacctt tcccatttgg ccagaatgta 1801 caatggttat gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc 1861 cgggaaaatc atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag 1921 ccaggtcact atgttccccc atataatagt agatgttagg caactggaac ctgtgttgat 1981 ccccctgcct gatgttagga ataatttcta tcattacaat caatcaaatg accccaccat 2041 caaattgata gcaatgctgt atacaccact tagggctaac aatgctgggg acgatgtctt 2101 cacagtctct tgtcgagttc tcacgagacc atcccccgat tttgatttca tatttttggt 2161 gccacccaca gttgagtcaa gaactaaacc attctctgtc ccaatcttaa ctgttgagga 2221 gatgaccaat tcaagattcc ctattccttt ggaaaagttg ttcacgggtc ccagcagtgc 2281 ctttgttgtt caaccacaaa atggcagatg cacgactgat ggcgtgcttt taggtactac 2341 ccagctgtct cctgtcaaca tctgcacctt cagaggggat gtcacccaca ttgcaggtac 2401 tcaaaattac acaatgaatc tggcctccca aaattggaac aattatgacc caacagaaga 2461 aatcccagct cctctgggaa ccccagattt tgtaggaaag atccaaggcg tgctcaccca 2521 aaccacaagg agggacggct cgacccgcgg tcacaaagcc acagtaagca ctggaagtgt 2581 ccacttcacc ccaaagctgg gcagtgtcca actctctact gatacaagca atgactttga 2641 aactggccaa aacacgagat tcaccccagt cggtgtcgtc caggatggta gtaccaccca 2701 ccaaaatgaa ccccaacaat gggtgctccc agactattca ggtagagata gtcacaatgt 2761 acacctagcc cctgccgtgg cccccacttt tccgggtgag caacttcttt tctttaggtc 2821 cactatgccc ggatgcagcg ggtatcccaa catgaatttg gattgcctac tcccccagga 2881 gtgggtgcag cacttctacc aagagtcagc cccagcacaa tctgatgtgg cactgctgag 2941 atttgtgaat ccagacacag gtagggtttt gtttgagtgc aagcttcata aatcaggcta 3001 tgtaacagtg gctcacactg gccaacatga tttggttatc ccccccaatg gctattttag 3061 atttgattcc tgggtcaacc aattctacac acttgccccc atgggaaatg gagcggggcg 3121 tagacgtgca ttataatggc tggagctttc tttgctggat tggcatctga tgtccttggc 3181 tctggacttg gctctctaat caatgctggg gctggggcca tcaaccaaaa agttgagttt 3241 gaaaataaca gaaaattgca acaagcttcc ttccaattta gcagcaacct acaacaggct 3301 tcctttcaac atgataaaga gatgctccaa gcacaaattg aggccaccaa aaagttgcaa 3361 caggaaatga tgaaagttaa acaggcaatg ctcctagagg gtgggttctc tgagacagat 3421 gcagcccgtg gggcagtcaa cgcccctatg acaaaggctt tggactggag cggaacaagg 3481 tactgggctc ccgatgctag gactacaaca tacaatgcag gccgcttttc cacccctcaa 3541 ccctcggggg catcgtcagg aagaactaat cttagggcta ctgtccccgc tcggggctcc 3601 tccagcacac cctttaatgc ttctactgct acttctgtgt actcaaatca aactgcttca 3661 acgagacttg gttctacagc tggttctggt accagtgtct cgagcctccc gtcaactgca 3721 aggactagga gctgggttga ggatcaaaac aggaatttgt cacctttcat gaggggggcc 3781 cacaacatat cgtttgtcac cccaccatct agtagatcct ctagccaagg cacagtctca 3841 accgtgccta aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct 3901 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacagaaatt 3961 gattatcatt cttttcttca gtgtctttt //