Typing tool
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Typing tool
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Complete norovirus genomes
| HM802539 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..1533
ORF2: 1514..3136
ORF3: 3136..3942
LOCUS HM802539 3989 bp RNA linear VRL 05-JAN-2012
DEFINITION Norovirus Hu/GII.4/Hong Kong/CU060025/2006/CHN RNA-dependent RNA
polymerase gene, partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION HM802539
VERSION HM802539.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Hong Kong/CU060025/2006/CHN
ORGANISM Norovirus Hu/GII.4/Hong Kong/CU060025/2006/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3989)
AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and
Sung,J.J.
TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus
Genogroup II Genotype 4 Strains
JOURNAL J. Virol. 86 (2), 1227-1232 (2012)
PUBMED 22072750
REFERENCE 2 (bases 1 to 3989)
AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese
University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of
Wales Hospital, Shatin, Hong Kong, China
FEATURES Location/Qualifiers
source 1..3989
/organism="Norovirus Hu/GII.4/Hong Kong/CU060025/2006/CHN"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Hong Kong/CU060025/2006/CHN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:932948"
/country="Hong Kong"
/collection_date="2006"
CDS <1..1533
/note="RdRp"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ADR78907.1"
/translation="GGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPA
YLGGKDPRVKDGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPE
KWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV
YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRVG
MNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVA
EDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQA
NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLR
RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALH
GPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG
VE"
CDS 1514..3136
/codon_start=1
/product="VP1"
/protein_id="ADR78908.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3136..3942
/codon_start=1
/product="VP2"
/protein_id="ADR78909.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
3'UTR 3943..3989
ORIGIN
1 ggtggtgaca gtaagggaac atactgtggt gcaccaatcc taggcccagg gagtgcccca
61 aaacttagca ccaagaccaa attctggaga tcatccacag caccactccc acctggcacc
121 tatgaaccag cctaccttgg tggcaaggac cccagagtca aggatggccc ctcgttgcag
181 caagtcatga gggaccagct gaaaccattt acagagccta ggggtaagcc accaaagcca
241 agcgtgttag aagctgccaa gaaaaccatc atcaatgtcc ttgaacaaac aattgaccca
301 cctgagaagt ggtcgttcgc acaagcttgc gcgtcccttg acaagaccac ttctagcggc
361 catccgcacc acatgcggaa aaacgactgc tggaacgggg aatccttcac aggcaagctg
421 gcagaccagg cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtc
481 tacacaggtg cacttaagga tgaattagtc aaaactgaca aaatttatgg taagatcaag
541 aagaggcttc tctggggctc ggatttagca accatgatcc ggtgtgctcg agcattcgga
601 ggcctaatgg atgaactcaa agcacactgt gtcacacttc ctatcagagt tggtatgaat
661 atgaatgagg atggccccat catcttcgag aagcattcca ggtacagata ccactatgat
721 gctgattact ctcggtggga ttcaacacaa cagagagccg tgctggcagc tgctctagaa
781 atcatggtta aattctcctc agaaccacat ttggctcagg tagtagcaga agaccttctt
841 tctcctagcg tggtggatgt gggtgacttc acaatatcaa tcaacgaggg tcttccctct
901 ggggtgccct gcacctccca atggaactcc atcgcccact ggcttctcac tctctgtgca
961 ctctccgaag ttacaaattt gtccccagac atcatacagg ctaattctct cttctccttc
1021 tatggtgatg atgaaattgt tagtacagac ataaaattag acccagagaa gttgacagca
1081 aagcttaagg aatacgggtt gaaaccaacc cgccctgata aaactgaagg acctcttgtt
1141 atttctgaag acttagatgg tttgactttc ctgcggagaa ctgtgacccg cgacccagct
1201 ggttggtttg gaaaactgga gcagagctca atactcaggc aaatgtactg gactaggggc
1261 cccaaccatg aagatccatc tgaatcaatg attccacact ctcaaagacc catacaattg
1321 atgtccttac tgggagaggc cgcactccac ggcccaacat tctacagtaa aatcagcaaa
1381 ttagtcattg cagagctaaa agaaggtggt atggattttt acgtgcccag gcaagagcca
1441 atgttcagat ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct
1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccaac ccatctgatg ggtccgcagc
1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg tcggtgccgc
1621 tattgcggcg cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaataattt
1681 tgtacaagcc cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatact
1741 atggagcgcg cccttaggcc ctgatctgaa tccctaccta tctcatttgg ccagaatgta
1801 taatggttat gcaggtggtt ttgaagtgca ggtgatcctc gcggggaacg cgttcaccgc
1861 cggaaaaatt atatttgcag cagtcccacc aaattttcca actgaaggct tgagtcccag
1921 ccaggtcact atgttccccc acataatagt ggatgttagg caattggaac ctgtgttgat
1981 ccccttacct gatgttagga ataactttta tcactataat cagtcaaatg attctaccat
2041 taaattgata gcaatgctgt atacaccact tagggctaat aatgctgggg aagatgtctt
2101 cacagtctct tgtcgagttc tcacgaggcc atcccctgat tttgatttta tatttttggt
2161 gccacctaca gttgagtcaa gaactaaacc atttactgtc ccaatcttaa ctgttgaaga
2221 aatgaccaat tcaagattcc ccattccttt ggaaaaattg ttcacgggtc ccagcagtgc
2281 ctttgttgtt caaccacaaa atggcagatg cacgactgat ggcgtgctct taggcaccac
2341 ccaactgtct cctgtcaaca tctgcacctt cagaggggat gtcacccaca ttgcaggttc
2401 tcgtaattac acaatgaatt tggcttctct aaattggaac aattatgacc caacagaaga
2461 aattccagcc cctctaggaa ctccagattt cgtgggaaag atccaaggtg tgctcactca
2521 aaccacaaag ggagatggct cgacccgtgg ccataaagct acagtttaca ctgggagtgc
2581 cccctttact ccaaagctgg gcagtgttca attcagtact gatacagaaa atgattttga
2641 aactcaccaa aacacaaaat tcaccccagt cggtgtcatc caggatggta gcaccaccca
2701 ccgaaatgaa ccccaacaat gggtgctccc aagttattca ggtagaaatg tccataatgt
2761 acacctagcc cctgctgtag cccccacttt tccgggtgaa caacttcttt tctttaggtc
2821 cactatgccc ggatgcagcg ggtatcccaa catggatttg gattgcctac tcccccagga
2881 gtgggtgcag cacttctacc aagaggcagc tccagcacaa tctgatgtgg ctctattgag
2941 atttgtgaat ccagacacgg gtagggtcct gtttgagtgc aaacttcata aatcaggcta
3001 tgtcacagtg gctcacaccg gccagcatga tttggtcatc ccccccaatg gttattttag
3061 gtttgattcc tgggttaatc aattctacac acttgccccc atgggaaatg gaacggggcg
3121 tagacgtgct ttataatggc tggagctttc tttgctggat tggcatctga tgtccttagc
3181 tctggacttg gttccctaat caatgctggg gctggggcta tcaaccaaaa gattgatttt
3241 gaaaataaca gaaaattgca gcaagcttcc ttccagttta gcagtaatct acaacaggct
3301 tcctttcaac atgataaaga gatgctccaa gcacaaattg aggccactaa aaagttgcaa
3361 caggaaatga tgaaagtcaa acaggcaatg ctcttagaag gtggattctc tgaaacagat
3421 gcagcccgtg gggcaatcaa cgcccctatg acaaaggctt tggactggag cggaacaagg
3481 tactgggccc ctgatgctag gactacaaca tacaatgcag gccgtttttc cacccctcaa
3541 ccttcggggg cactgccagg aagaatcaat cccaggactc ctacccccgc tcggggctcc
3601 cccagcacat cttctaatgc ttctactgct acttctatat attcaaatca aactgtttca
3661 acgagacttg gttctacagc tggttctggc accaatgtct cgagtctccc gtcaactgca
3721 aggactagga gttgggttga ggatcaaaac agaaatttgt cacctttcat gaggggggct
3781 cacaacatat cgtttgtcac cccaccatct agcagatcct ctagccaagg cacagtctca
3841 accgtgccta aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct
3901 ctcttcgctc acattcgtag gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg
3961 attatctttc cctttcttta gtgtctttt
//