Typing tool
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Typing tool
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Complete norovirus genomes
| HM802538 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..1533
ORF2: 1514..3136
ORF3: 3136..3942
LOCUS HM802538 3989 bp RNA linear VRL 05-JAN-2012
DEFINITION Norovirus Hu/GII.4/Hong Kong/CU060024/2006/CHN RNA-dependent RNA
polymerase gene, partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION HM802538
VERSION HM802538.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Hong Kong/CU060024/2006/CHN
ORGANISM Norovirus Hu/GII.4/Hong Kong/CU060024/2006/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3989)
AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and
Sung,J.J.
TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus
Genogroup II Genotype 4 Strains
JOURNAL J. Virol. 86 (2), 1227-1232 (2012)
PUBMED 22072750
REFERENCE 2 (bases 1 to 3989)
AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese
University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of
Wales Hospital, Shatin, Hong Kong, China
FEATURES Location/Qualifiers
source 1..3989
/organism="Norovirus Hu/GII.4/Hong Kong/CU060024/2006/CHN"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Hong Kong/CU060024/2006/CHN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:932947"
/geo_loc_name="Hong Kong"
/collection_date="2006"
CDS <1..1533
/note="RdRp"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ADR78904.1"
/translation="GGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPA
YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPE
KWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV
YTGALKDELVKTDRIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRVG
MNMNEDGPIVFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVA
EDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQA
NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLR
RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALH
GPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG
VE"
CDS 1514..3136
/codon_start=1
/product="VP1"
/protein_id="ADR78905.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3136..3942
/codon_start=1
/product="VP2"
/protein_id="ADR78906.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRAPTPARVSSSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
3'UTR 3943..3989
ORIGIN
1 ggtggtgaca gtaagggaac atactgtggt gcaccaatcc taggcccagg gagcgcccca
61 aaacttagca ccaaaaccaa attctggaga tcatccacag caccactccc acctggcacc
121 tatgaaccag cctaccttgg tggcaaggac cccagagtca agggtggccc ctcgttgcag
181 caagtcatga gggaccagct gaaaccgttt acagagccca ggggtaagcc accaaagcca
241 agtgtgttag aagctgccaa gaaaaccatc atcaatgtcc ttgaacaaac aattgaccca
301 cctgagaagt ggtcgttcgc acaagcttgc gcgtcccttg acaagaccac ttctagcggc
361 catccgcacc acatgcggaa aaacgactgc tggaacgggg agtcctttac aggcaagctg
421 gcagaccagg cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtt
481 tacacaggtg cacttaagga tgaattagtc aaaactgata gaatttatgg taagatcaag
541 aagaggcttc tctggggctc ggatttagca accatgatcc ggtgtgctcg agcattcgga
601 ggcctaatgg atgaactcaa agcgcactgt gtcacacttc ctatcagagt tggtatgaat
661 atgaatgagg atggccccat cgtcttcgag aagcattcca ggtacagata ccactatgat
721 gctgattact ctcggtggga ttcaacacaa cagagagccg tgctggcagc tgctctagaa
781 atcatggtta aattctcctc agaaccacat ttggctcagg tggtcgcaga agaccttctt
841 tctcctagcg tggtggatgt gggtgacttc acaatatcaa tcaacgaggg tcttccctct
901 ggggtgccct gcacctccca atggaactcc atcgcccact ggcttctcac cctctgtgca
961 ctctccgaag ttacaaattt gtccccagac atcatacagg ctaattctct cttctccttc
1021 tatggtgatg atgaaattgt tagtacagac ataaaactag acccagagaa gttgacagca
1081 aagcttaagg aatatgggtt gaaaccaacc cgccctgata aaactgaagg acctcttgtt
1141 atttctgaag acttagatgg tttgactttc ctgcggagaa ctgtgacccg cgacccagct
1201 ggttggtttg gaaaactgga gcagagctca atactcaggc aaatgtactg gactaggggc
1261 cccaaccatg aagatccatc tgaatcaatg attccacact ctcaaagacc catacaattg
1321 atgtccttac tgggagaggc cgcactccac ggcccaacat tctacagtaa aatcagcaaa
1381 ttagtcattg cagagctaaa agaaggtggt atggattttt acgtgcccag gcaagagcca
1441 atgttcagat ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct
1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccaac ccatctgatg ggtccgcagc
1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg tcggtgccgc
1621 tattgcggcg cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaataattt
1681 tgtacaagcc cctggtggag agttcacagt atcccctaga aacgctccag gtgaaatatt
1741 atggagcgcg cctttaggcc ctgatctgaa tccctaccta tctcatttgg ccagaatgta
1801 taatggttat gcaggtggtt ttgaagtgca ggtgatcctc gcggggaacg cgttcaccgc
1861 cggaaaaatt atatttgcag cagtcccacc aaattttcca actgaaggct tgagccccag
1921 tcaggtcact atgttccccc acataatagt agatgttagg caattggaac ctgtgttgat
1981 ccccttacct gatgttagga ataacttcta tcattataat cagtcaaatg attctaccat
2041 taaattgata gcaatgctgt atacaccact tagggctaat aatgctgggg aagatgtctt
2101 cacagtctct tgtcgagtcc tcacgaggcc atcccctgat tttgatttta tatttttggt
2161 gccacctaca gttgagtcaa gaactaaacc atttactgtc ccaatcttaa ctgttgaaga
2221 aatgaccaat tcaagattcc ccattccttt ggaaaagttg ttcacgggtc ccagcggtgc
2281 ctttgttgtt caaccacaaa atggcagatg cacgactgat ggcgtgctct taggcaccac
2341 ccaactgtct cctgtcaaca tctgcacctt cagaggggat gtcacccaca ttgcaggttc
2401 tcgtaattac acaatgaatt tggcttctct aaattggaac aattatgacc caacagaaga
2461 aattccagcc cctctaggaa ctccagattt cgtgggaaag atccaaggtg tgctcactca
2521 aaccacaaag ggagatggct cgacccgtgg ccataaagct acagtttaca ctgggagtgc
2581 cccctttact ccaaagctgg gcagtgttca attcagtact gatacagaaa atgattttga
2641 aactcaccaa aacacaaaat tcaccccagt cggtgtcatc caggatggta gcaccaccca
2701 ccgaaatgaa ccccaacaat gggtgctccc aagttattca ggtagaaatg tccataatgt
2761 acacctagcc cctgctgtag cccccacttt tccgggtgaa caacttcttt tcttcaggtc
2821 cactatgccc ggatgcagcg ggtatcccaa catggatttg gattgcctac tcccccagga
2881 gtgggtgcag cacttctacc aagaggcagc tccagcacaa tctgatgtgg ctctattgag
2941 atttgtgaat ccagacacgg gtagggtcct gtttgagtgc aaacttcata aatcaggcta
3001 tgtcacagtg gctcacaccg gccagcatga tttggtcatc ccccccaatg gctattttag
3061 gtttgattcc tgggttaatc aattctacac acttgccccc atgggaaatg gaacggggcg
3121 tagacgtgct ttataatggc tggggctttc tttgctggat tggcatctga tgtccttggc
3181 tctggacttg gttccctaat caatgctggg gctggggcta tcaaccaaaa gattgatttt
3241 gaaaataaca gaaaattgca gcaagcttcc ttccagttta gcagtaatct acaacaggct
3301 tcctttcaac atgacaaaga gatgctccaa gcacaaatcg aggccactaa aaagttgcaa
3361 caggaaatga tgaaagtcaa acaggcaatg ctcttagaag gtggattctc tgaaacagat
3421 gcagctcgtg gggcaatcaa cgcccccatg acaaaggctt tggactggag cggaacaagg
3481 tactgggccc ctgatgctag gactacaaca tacaatgcag gccgcttttc cacccctcaa
3541 ccctcggggg cactgccagg aagaatcaat cccagggctc ctacccccgc tcgggtctcc
3601 tccagtacat cttctaatgc ttctactgct acttctatat attcaaatca aactgtttca
3661 acgagacttg gttctacagc tggttctggc accaatgtct cgagtctccc gtcaactgca
3721 aggactagga gttgggttga ggatcaaaac agaaatttgt cacctttcat gaggggggct
3781 cacaacatat cgtttgtcac cccaccatct agcagatcct ctagccaagg cacagtctca
3841 accgtgccta aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct
3901 ctcttcgctc acattcgtag gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg
3961 attatctttc cttttcttta gtgtctttt
//