Typing tool
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Complete norovirus genomes
HM802535 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..1533 ORF2: 1514..3136 ORF3: 3136..3942LOCUS HM802535 3989 bp RNA linear VRL 05-JAN-2012 DEFINITION Norovirus Hu/GII.4/Hong Kong/CU060001/2006/CHN RNA-dependent RNA polymerase gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION HM802535 VERSION HM802535.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Hong Kong/CU060001/2006/CHN ORGANISM Norovirus Hu/GII.4/Hong Kong/CU060001/2006/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3989) AUTHORS Chan,M.C., Lee,N., Ho,W.S., Law,C.O., Lau,T.C., Tsui,S.K. and Sung,J.J. TITLE Covariation of Major and Minor Viral Capsid Proteins in Norovirus Genogroup II Genotype 4 Strains JOURNAL J. Virol. 86 (2), 1227-1232 (2012) PUBMED 22072750 REFERENCE 2 (bases 1 to 3989) AUTHORS Chan,M.C.W., Ho,W.S., Lee,N. and Sung,J.J.Y. TITLE Direct Submission JOURNAL Submitted (20-JUL-2010) Institute of Digestive Disease, The Chinese University of Hong Kong, Room 707, LiKS Med. Sci. Bldg., Prince of Wales Hospital, Shatin, Hong Kong, China FEATURES Location/Qualifiers source 1..3989 /organism="Norovirus Hu/GII.4/Hong Kong/CU060001/2006/CHN" /mol_type="genomic RNA" /strain="Hu/GII.4/Hong Kong/CU060001/2006/CHN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:932942" /country="Hong Kong" /collection_date="2006" CDS <1..1533 /note="RdRp" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ADR78895.1" /translation="GGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPA YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPE KWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPV YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRVG MNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVA EDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQA NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLR RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALH GPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDG VE" CDS 1514..3136 /codon_start=1 /product="VP1" /protein_id="ADR78896.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3136..3942 /codon_start=1 /product="VP2" /protein_id="ADR78897.1" /translation="MAGAFFAGLASDVLGSGLGSLTNAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRAPTPARVSSSTSS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" 3'UTR 3943..3989 ORIGIN 1 ggtggtgaca gtaagggaac atactgtggt gcaccaatcc taggcccagg gagcgcccca 61 aaacttagca ccaaaaccaa attctggaga tcatccacag caccactccc acctggcacc 121 tatgaaccag cctaccttgg tggcaaggac cccagagtca agggtggccc ctcgttgcag 181 caagtcatga gggaccagct gaaaccgttt acagagccca ggggtaagcc accaaagcca 241 agtgtgttag aagctgccaa gaaaaccatc atcaatgttc ttgaacaaac aattgaccca 301 cctgagaagt ggtcgttcgc acaagcttgc gcgtcccttg acaagaccac ttctagcggc 361 catccgcacc acatgcggaa aaacgactgc tggaacgggg agtcctttac aggcaagctg 421 gcagaccagg cttccaaggc caacctgatg tttgaagaag ggaagaacat gaccccagtt 481 tacacaggtg cacttaagga tgaattagtc aaaactgaca aaatttatgg taagatcaag 541 aagaggcttc tctggggctc ggatttagca accatgatcc ggtgtgctcg agcattcgga 601 ggcctaatgg atgaactcaa agcacactgt gtcacacttc ctatcagagt tggtatgaat 661 atgaatgagg atggccccat catcttcgag aagcattcca ggtacagata ccactatgat 721 gctgattact ctcggtggga ttcaacacaa cagagagccg tgctggcagc tgctctagaa 781 atcatggtta aattctcctc agaaccacat ttggctcagg tggtcgcaga agaccttctt 841 tctcctagcg tggtggatgt gggtgacttc acaatatcaa tcaacgaggg tcttccctct 901 ggggtgccct gcacctccca atggaactcc atcgcccact ggcttctcac tctctgtgca 961 ctctccgaag ttacaaattt gtccccagac atcatacagg ctaattctct cttctccttc 1021 tatggtgatg atgaaattgt tagtacagac ataaaactag acccagagaa gttgacagca 1081 aagcttaagg aatatgggtt gaaaccaacc cgccctgata aaactgaagg acctcttgtt 1141 atttctgaag acttagatgg tttgactttc ctgcggagaa ctgtgacccg cgacccagct 1201 ggttggtttg gaaaactgga gcagagctca atactcaggc aaatgtactg gactaggggc 1261 cccaaccatg aagatccatc tgaatcaatg attccacact ctcaaagacc catacaattg 1321 atgtccttac tgggagaggc cgcactccac ggcccaacat tctacagtaa aatcagcaaa 1381 ttagtcattg cagagctaaa agaaggtggt atggattttt acgtgcccag gcaagagcca 1441 atgttcagat ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct 1501 cccagttttg tgaatgaaga tggcgtcgaa tgacgccaac ccatctgatg ggtccgcagc 1561 caacctcgtc ccagaggtca acaatgaggt tatggctttg gagcccgttg tcggtgccgc 1621 tattgcggcg cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaataattt 1681 tgtacaagcc cctggtggag agttcacagt atcccctaga aacgctccag gtgaaatact 1741 atggagcgcg cccttaggcc ctgatctgaa tccctaccta tctcatttgg ccagaatgta 1801 taatggttat gcaggtggtt ttgaagtgca ggtgatcctc gcggggaacg cgttcaccgc 1861 cggaaaaatt atatttgcag cagtcccacc aaattttcca actgaaggct tgagccccag 1921 tcaggtcact atgttccccc acataatagt agatgttagg caattggaac ctgtgttgat 1981 ccccttacct gatgttagga ataacttcta tcattataat cagtcaaatg attctaccat 2041 taaattgata gcaatgctgt atacaccact tagggctaat aatgctgggg aagatgtctt 2101 cacagtctct tgtcgagtcc tcacgaggcc atcccctgat tttgatttta tatttttggt 2161 gccacctaca gttgagtcaa gaactaaacc atttactgtc ccaatcttaa ctgttgaaga 2221 aatgaccaat tcaagattcc ccattccttt ggaaaagttg ttcacgggtc ccagcggtgc 2281 ctttgttgtt caaccacaaa atggcagatg cacgactgat ggcgtgctct taggcaccac 2341 ccaactgtct cctgtcaaca tctgcacctt cagaggggat gtcacccaca ttgcaggttc 2401 tcgtaattac acaatgaatt tggcttctct aaattggaac aattatgacc caacagaaga 2461 aattccagcc cctctaggaa ctccagattt cgtgggaaag atccaaggtg tgctcactca 2521 aaccacaaag ggagatggct cgacccgtgg ccataaagct acagtttaca ctgggagtgc 2581 cccctttact ccaaagctgg gcagtgttca attcagtact gatacagaaa atgattttga 2641 aactcaccaa aacacaaaat tcaccccagt cggtgtcatc caggatggta gcaccaccca 2701 ccgaaatgaa ccccaacaat gggtgctccc aagttattca ggtagaaatg tccataatgt 2761 acacctagcc cctgctgtag cccccacttt tccgggtgaa caacttcttt tcttcaggtc 2821 cactatgccc ggatgcagcg ggtatcccaa catggatttg gattgcctac tcccccagga 2881 gtgggtgcag cacttctacc aagaggcagc tccagcacaa tctgatgtgg ctctattgag 2941 atttgtgaat ccagacacgg gtagggtcct gtttgagtgc aaacttcata aatcaggcta 3001 tgtcacagtg gctcacaccg gccagcatga tttggtcatc ccccccaatg gctattttag 3061 gtttgattcc tgggttaatc aattctacac acttgccccc atgggaaatg gaacggggcg 3121 tagacgtgct ttataatggc tggggctttc tttgctggat tggcatctga tgtccttggc 3181 tctggacttg gttccctaac caatgctggg gctggggcta tcaaccaaaa gattgatttt 3241 gaaaataaca gaaaattgca gcaagcttcc ttccagttta gcagtaatct acaacaggct 3301 tcctttcaac atgacaaaga gatgctccaa gcacaaattg aggccactaa aaagttgcaa 3361 caggaaatga tgaaagtcaa acaggcaatg ctcttagaag gtggattctc tgaaacagat 3421 gcagctcgtg gggcaatcaa cgcccccatg acaaaggctt tggactggag cggaacaagg 3481 tactgggccc ctgatgctag gactacaaca tacaatgcag gccgcttttc cacccctcaa 3541 ccttcggggg cactgccagg aagaatcaat cccagggctc ctacccccgc tcgggtctcc 3601 tccagtacat cttctaatgc ttctactgct acttctatat attcaaatca aactgtttca 3661 acgagacttg gttctacagc tggttctggt accaatgtct cgagtctccc gtcaactgca 3721 aggactagga gttgggttga ggatcaaaac agaaatttgt cacctttcat gaggggggct 3781 cacaacatat cgtttgtcac cccaccatct agcagatcct ctagccaagg cacagtctca 3841 accgtgccta aagaagtttt ggactcctgg actggcgctt tcaacacgcg caggcagcct 3901 ctcttcgctc acattcgtag gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg 3961 attatctttc cttttcttta gtgtctttt //