Typing tool
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Typing tool
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Complete norovirus genomes
| HM748973 | GII.4 Yerseke | |
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| GII.P4 Hunter |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS HM748973 7560 bp RNA linear VRL 10-MAY-2013
DEFINITION Norovirus Hu/GII.4/Turramurra/NSW892U/2009/AUS, complete genome.
ACCESSION HM748973
VERSION HM748973.2
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Turramurra/NSW892U/2009/AUS
ORGANISM Norovirus Hu/GII.4/Turramurra/NSW892U/2009/AUS
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7560)
AUTHORS Eden,J.S., Tanaka,M.M., Boni,M.F., Rawlinson,W.D. and White,P.A.
TITLE Recombination within the Pandemic Norovirus GII.4 Lineage
JOURNAL J. Virol. 87 (11), 6270-6282 (2013)
PUBMED 23536665
REFERENCE 2 (bases 1 to 7560)
AUTHORS Eden,J.-S., Bull,R.A., Lim,H.F. and White,P.A.
TITLE Emergence of a New Pandemic Norovirus Variant of the GII.4 Lineage
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 7560)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2010) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REFERENCE 4 (bases 1 to 7560)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REMARK Sequence update by submitter
COMMENT On Feb 6, 2012 this sequence version replaced HM748973.1.
FEATURES Location/Qualifiers
source 1..7560
/organism="Norovirus Hu/GII.4/Turramurra/NSW892U/2009/AUS"
/mol_type="genomic RNA"
/strain="Hu/GII.4/NSW892U/2009/AU"
/host="Homo sapiens"
/db_xref="taxon:925747"
/country="Australia"
/collection_date="2009"
/note="genotype: GII.4"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ADQ43782.2"
/translation="MKMASNDASAAAVANSNNDTVKSSSDGVLSSMAVTFKRALGARP
KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDDIVVSYSVKDGVSGLPDLSTVRQPE
ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LARVELTPLSLYWRPVYTPQYLISPDALKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMKIGRQLKDVRTM
PELKQALKNISIKKCQIVYSGSTYTLESDGKGNVKVDRVQSASVQTNNELAGALHHLR
CARIRYYVRCVQEALYSIIQIAGAAFVTTRIVKRMNIQNLWSKPQVENTEETTSKDGC
PKPKDDEEFVISSDDIKAEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
EYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="ADQ43783.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6707..7513
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AEZ56475.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKVLDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANFRAAVPARGSSSIPS
NSSTTTSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
3'UTR 7514..7560
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaata gcaacaacga
61 caccgtaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt tcaaacgagc
121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacaaagac ccccacgacc
181 acctactcca gaactggtca aaaatatccc ccccccccca cccaacggag aggatgacat
241 agtggtttct tatagtgtca aagatggtgt ctctggtttg cctgatcttt ccaccgtcag
301 gcaaccggaa gaatctaata cggctttcag tgtccctcca ctcaatcaga gggagaatag
361 agatgctaag gagccactga ctggaacaat tttggaaatg tgggatggag aaatctatca
421 ttatggcctg tatgtagagc gaggtcttgt gctaggtgtg cacaaaccac cagctgccat
481 cagcctcgct agggtcgaac taacaccact ctccttgtac tggagacctg tgtatactcc
541 ccagtacctc atctccccag acgctctcaa gaaactacac ggagagacgt tcccctacac
601 agcctttgac aacaactgct atgccttttg ctgttgggtc ctggacttaa acgactcgtg
661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgactc caagttaaag aaggtagcta acatattcct
781 gtgtgcactg tcttcactat tcaccaggcc tataaaagat ataataggga agctaaggcc
841 tcttaacatc ctcaacatct tggcctcatg tgattggact tttgcaggca tagtggagtc
901 cttgatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg actacgagct gcagggacct gaggaccttg cggtggagct
1021 cgtccctgta gtgatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catccacctt gagagcttgt aaagatctcg gtgcatacgg
1141 gctggagatc ctaaagttgg tcatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctata gtgagatcca tcgaggatgc agtcctagat ctcgaagcaa ttgaaaacaa
1261 ccatatgacc accttgctca aagacaaaga cagtctggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca ggaaactctc aaccaagtct gcttcacctg acattgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc tgctgcacgt tctctggtgc atcgagcgaa
1441 ggaggaactt tctagcagac caagacctgt agtgttgatg atatcaggca ggccaggaat
1501 agggaagacc caccttgcca gggaagtggc taagagaatc gcagcctccc ttacaggaga
1561 ccagcgtgta ggcctcgtcc cacgcaatgg cgtcgaccat tgggatgcgt acaaggggga
1621 gagggtcgtt ctatgggacg actatggaat gagcaatccc atccacgatg ccctcagatt
1681 gcaagaactc gctgacactt gtcccctcac cctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagcgatg tcatcattat caccactaat ctggccaacc cagcaccact
1801 ggactacgtc aactttgaag cttgctcgag gcgcatcgac ttcctcgtgt atgcagaagc
1861 ccctgaggtc gaaaaggcga agcgtgactt cccaggccaa cccgacatgt ggaagaacgc
1921 cttcagttct gatttctcac acataaaact aacattggct ccacagggtg gtttcgacaa
1981 gaacgggaat accccacacg ggaagggcgt catgaagact ctcaccaccg gctcccttat
2041 tgcccgggcg tcagggctac tccatgagag gctagatgaa tttgaactac agggcccaac
2101 tcttaccacc ttcaactttg atcgcaataa agtgcttgcc tttagacaac ttgctgctga
2161 aaacaaatat gggttgatgg acacaatgaa aattgggagg cagctcaagg atgtcagaac
2221 aatgccagag ctcaagcaag cactcaagaa tatttcaatc aagaagtgcc agatagtgta
2281 tagtggtagc acctacacac ttgagtctga tggcaagggc aatgtgaagg ttgacagagt
2341 tcaaagcgcc tctgtgcaga ccaacaatga gctggctggc gccctacacc atctaaggtg
2401 cgccagaata agatactatg tcaggtgtgt ccaggaggcc ctgtattcca tcatccagat
2461 tgctggggct gcatttgtca ccacgcgcat cgtcaagcgc atgaacatac aaaacctatg
2521 gtctaagcca caagtggaaa atacagagga gactaccagc aaggacgggt gtccaaaacc
2581 caaagatgat gaggagttcg tcatttcatc cgacgacatc aaagctgagg gcaagaaagg
2641 gaaaaacaag actggccgcg gcaagaagca cacagccttc tcaagcaagg gtctcagtga
2701 tgaagagtac gatgagtaca agaggattag agaagagagg aatggtaagt actccataga
2761 agagtacctt caggacagag acagatacta tgaggaggtg gccattgcca gggcgactga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca ggccaacaag
2881 gaaacaacgc aaggaggaaa gagcttctct tggtttagtc acaggttctg aaattaggaa
2941 aagaaatcca gatgatttca aacccaaggg gaaactgtgg gctgacgatg acagaagtgt
3001 ggactataat gagaaactca gttttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggat tctgggtttc ccccagtttg ttcataacat caacacatgt
3121 cataccccag ggagcaaagg agttctttgg agtccccatc aagcaaattc aggtacataa
3181 gtcaggcgaa ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacgggcat
3241 gatcttagaa gaaggtgcac ccgagggcac cgtggttaca ttactcatca aaaggtccac
3301 tggagaactc atgcccctag cagctaggat ggggacccat gcaaccatga gaatccaagg
3361 acgcactgtt ggaggtcaaa tgggcatgct tctgacagga tccaacgcca agagcatgga
3421 tctgggtacc acaccaggtg attgtggttg tccctacatc tacaagagag gaaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggaggc aacactgtca tatgtgccac
3541 ccaggggagc gagggagagg ctacacttga aggtggtgac aataaaggga catactgtgg
3601 tgcaccaatc ctaggcccag gaagtgcccc aaaacttagc accaagacca aattctggag
3661 atcgtccaca gcaccactcc cacctggcac ctatgaacca gcctatcttg gtggtaagga
3721 ccccagagtc aagggtggac cttcactgca gcaggtcatg agggatcagc tgaagccttt
3781 cacagagccc aggggcaagc caccaaagcc aagtgtgttg gaagctgcta agaaaaccat
3841 catcaatgtc cttgagcaaa caattgatcc acctgagaaa tggtcgttcg cacaagcttg
3901 cgcgtccctt gacaagacca cctccagtgg ccacccgcat cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca caggcaagct tgcagaccag gcttccaagg ccaacctgat
4021 gtttgaagag gggaagaaca tgacgccagt ctatacagct gcgcttaagg atgaattagt
4081 taaaactgac aaaatttatg gcaagatcaa gaagaggctt ctctggggct cggatttggc
4141 gaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcgcactg
4201 tgtcacactt cccattagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gagacactcc aggtacacat accactatga tgctgattac tctcgatggg attcaacaca
4321 acagagagcc gtgttggcag cagctctaga aatcatggtt aagttctccc cagaaccaca
4381 tctggcccag gtagtcgcag aagaccttct ttctcctagc gtggtggacg tgggtgactt
4441 cacaatatca attaacgagg gtcttccttc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ccctctgtgc gctctctgaa gttacaaact tgtctcctga
4561 caccatacaa gctaattccc tcttctcttt ttatggtgat gatgaaattg ttagcacaga
4621 cataaaattg gacccagaaa agttgacagc aaagctcagg gaatatgggt taaagccaac
4681 ccgccccgac aaaactgaag gaccccttgc catctctgaa gacttgaatg gcctgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagttc
4801 aatactcagg caaatgtact ggactagggg ttccaaccat gaagacccat ctgaaacaat
4861 gattccacac tcccaaagac ccatacaact gatgtcccta ctgggggagg ccgcactcca
4921 cggcccagca ttctacagca aaatcagcaa gttagtcatt gcagagctaa aagaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gttggcgccg ctattgcggc acctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc tcctggtgga gagttcacag
5281 tatcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatttga
5341 atccctacct ttcccatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagtcccac
5461 caaatttccc aactgaaggc ttgagcccca gccaggtcac tatgtttccc catataatag
5521 tagatgttag gcaattggaa cctgtgttga tccccttacc cgatgttagg aataatttct
5581 atcactacaa tcaatcaaat gaccccacca tcaaattgat agcaatgttg tatacaccac
5641 ttagggctaa taatgctggg gacgatgtct tcacagtttc ttgtcgggtt ctcacgagac
5701 catcccccga ttttgatttt atatttttag tgccacccac agttgagtca agaactaaac
5761 cattctctgt cccaatttta actgttgagg agatgaccaa ttcaagattc cccattcctt
5821 tggaaaagct gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aacggcaggt
5881 gcacgactga tggcgtgctc ctaggtacca cccaactgtc tcctgtcaac atctgcacct
5941 tcagagggga cgtcacccat attacaggca gtcgtaatta cacaatgaat ttggctactc
6001 aaaactggaa cagttatgac ccaacagaag aaatcccagc ccctctagga actccagatt
6061 tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag ggcagatggc tcgacccgcg
6121 gccacaaagc tacagtgtac actgggagcg ccgattttgc tccaaaactg ggtagagttc
6181 aatttgccac tgacacagac aatgattttg atgctaacca aaacacaaaa ttcaccccag
6241 tcggtgtcat ccaggatggt gatactgccc accgaaatga gccccaacaa tgggtgctcc
6301 caagttactc aggcagaaat agtcacaatg tgcacctggc ccccgctgta gcccccactt
6361 ttccgggtga gcaactcctc ttcttcagat ccactatgcc cggatgcagc gggtacccta
6421 acatggattt ggactgtctg ctccctcagg aatgggtaca gtatttctat caagaggcag
6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt
6541 tgtttgagtg taagcttcat aaatcaggct atgttacagt ggctcacacc ggccaacatg
6601 atttggttat cccccccaat ggttatttta gatttgattc ctgggtcaac cagttctaca
6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc tttataatgg ctggagcttt
6721 ctttgctgga ttggcatctg acgtccttgg ctccggactt ggttctctga tcaatgccgg
6781 ggctggggcc atcaatcaaa aagttgaatt tgaaaataac agaaaattgc aacaagcttc
6841 cttccaattc agcagcaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacca aaaagttgca acaggaaatg atgagagtta aacaggcaat
6961 gctcctagag ggtggattct ctgagacaga tgcagcccgt ggggcaatca acgcccccat
7021 gacaaaggtt ttggactgga gtgggactag gtactgggct cccgatgcta gaactacaac
7081 atacaatgca ggccactttt ccacccctca accctcgggg gcactgccag gaagagctaa
7141 ttttagggct gctgtccccg ctcggggctc ctctagcata ccttctaact cttctactac
7201 tacttctgtg tattcaaatc aaaccacttc aacgagactt ggttctacag ctggttctgg
7261 taccagtgtc tcgagcctcc cgtcaactgc aaggactagg agctgggttg aggatcaaaa
7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgccc aaagaagttt tggactcctg
7441 gactggcgct ttcaatacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt ctttcttttt agtgtctttt
//