Typing tool
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Typing tool
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Complete norovirus genomes
| HM748971 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS HM748971 7560 bp RNA linear VRL 10-MAY-2013
DEFINITION Norovirus Hu/GII.4/Beecroft/NSW305P/2009/AUS, complete genome.
ACCESSION HM748971
VERSION HM748971.2
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beecroft/NSW305P/2009/AUS
ORGANISM Norovirus Hu/GII.4/Beecroft/NSW305P/2009/AUS
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7560)
AUTHORS Eden,J.S., Tanaka,M.M., Boni,M.F., Rawlinson,W.D. and White,P.A.
TITLE Recombination within the Pandemic Norovirus GII.4 Lineage
JOURNAL J. Virol. 87 (11), 6270-6282 (2013)
PUBMED 23536665
REFERENCE 2 (bases 1 to 7560)
AUTHORS Eden,J.-S., Bull,R.A., Lim,H.F. and White,P.A.
TITLE Emergence of a New Pandemic Norovirus Variant of the GII.4 Lineage
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 7560)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2010) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REFERENCE 4 (bases 1 to 7560)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REMARK Sequence update by submitter
COMMENT On Feb 6, 2012 this sequence version replaced HM748971.1.
FEATURES Location/Qualifiers
source 1..7560
/organism="Norovirus Hu/GII.4/Beecroft/NSW305P/2009/AUS"
/mol_type="genomic RNA"
/strain="Hu/GII.4/NSW305P/2009/AU"
/host="Homo sapiens"
/db_xref="taxon:925745"
/country="Australia"
/collection_date="2009"
/note="genotype: GII.4"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ADQ43778.2"
/translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAATFKRTLGARP
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKNGVSGLPELSTVRQPE
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED
LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVKTM
PELKQALKNISIKKCQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATNKDGC
PKPKDNEEFVISSDDIKAEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKDGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="ADQ43779.1"
/translation="MKMASNDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWALPSYSGRNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6707..7513
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AEZ56473.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFFETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTLQPSGALPGRISPRTPTPARGSPSISS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRDLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWAGAFNTRRQPLFAHIRRRGESRV"
3'UTR 7514..7560
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acaaaatgtt ttctagcatg gctgccactt ttaaacgaac
121 cctcggggcg cggcctaaac agcccccccc gagggaaata ccacaaagac ccccacgacc
181 acctactcca gaactggtca aaaagatccc tcctcccccg cccaacgggg aggacgaagt
241 agtggtttct tatagtgcca aaaatggcgt ttccggttta cctgagcttt ccaccgtcag
301 gcaaccggaa gaaaccaaca cggccttcag cgtccctcca ctcaatcaga gggagaatag
361 ggatgctaag gaaccactga ctggaacaat tctggaaatg tgggatggag agatctacca
421 ttatggcctg tatgttgagc gaggtcttgt gctgggtgtg cacaaaccac cagctgccat
481 tagcctcgcc aaggtcgaac taacaccact ctctttgttc tggagacctg tgtacacccc
541 tcagtacctc atctctccag acactctcaa gaaattacac ggagaaacat ttccctacac
601 agccttcgac aacaattgct atgccttttg ttgctgggtc ctggatctaa acgactcgtg
661 gctgagtagg agaatgatcc aaagaacaac tggcttcttc agaccctacc aagattggaa
721 taggaaaccc ctccccacta tggatgattc taagttaaag aaggtagcta acatattcct
781 gtgcaccctg tcttcgctat tcaccaggcc cataaaagac ataataggga agttaaggcc
841 tctcaacatc atcaacatcc tggcttcatg tgattggact ttcgcaggca tagtggagtc
901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttactcggtg atttcgagtt acaaggacct gaggaccttg tagtagagct
1021 cgtccctgta gtaatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg
1081 aaaaatgttg tcatctgctg catctaccct gagagcttgt aaagatcttg gtgcgtatgg
1141 gctagagatc ctaaagttag tcatgaagtg gttcttcccg aagaaagagg aagcaaatga
1201 actggctatg gtgagatcca tcgaggatgc agtactggac cttgaggcaa ttgaaaacaa
1261 ccatatgacc accctgctca aagataaaga cagcctggca acctatatga gaacccttga
1321 cctcgaggaa gagaaggcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gcccttctgg cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa
1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat
1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga
1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgaccac tgggacgcgt acaaggggga
1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggct
1681 acaagaactc gctgacactt gccccctcac tctaaattgt gacaggattg agaataaagg
1741 aaaggtcttt gacagcgatg tcatcattat cactactaac ctggccaacc cagctccact
1801 ggactatgtc aactttgaag cgtgctcgag gcgcatcgat ttcctcgtgt atgcagaagc
1861 ccccgaggtc gaaaaagcga agcgtgactt cccgggccaa cctgacatgt ggaaaaacgc
1921 ttttagtcct gatttctcac acataaaatt ggcattggct ccacaaggtg gctttgacaa
1981 gaacgggaac accccacacg ggaagggcgt tatgaagact cttaccactg gctctctcat
2041 tgcccgggca tcagggctgc tccatgagag actggatgag tttgaactac agggcccagc
2101 tcttaccacc ttcaactttg accgcaacaa agtgctcgcc ttcaggcagc ttgctgctga
2161 aaacaaatac gggttgatgg acacaatgaa ggttgggagg cagctcaagg atgtcaaaac
2221 catgccagaa cttaaacaag cactcaagaa tatctcaatc aagaagtgcc agattgtgta
2281 tagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagggt
2341 tcagagcacc tccgttcaga ccaacaatga gctggctggc gccctgcacc atctaaggtg
2401 cgctagaatc aggtactatg tcaagtgtgt ccaggaggcc ctgtattcta tcatccagat
2461 tgctggggct gcatttgtca ccacgcgcat catcaagcgt gttaacatcc aagacttatg
2521 gtccaagcca caagtggaaa acacagagga ggccaccaac aaggacgggt gcccaaaacc
2581 caaagataat gaggagttcg tcatttcatc tgacgacatt aaagctgagg gtaagaaggg
2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagtaaag gtctcagtga
2701 tgaagagtat gatgagtaca agagaattag agaggaaagg aatggcaagt actccataga
2761 agagtacctt caggacaggg acagatacta tgaggaggtg gccattgcta gggcgaccga
2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca gaccaacaag
2881 gaaacaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa
2941 aaggaaccca gaagacttca agcctaaggg gaaactatgg gctgacgatg acagaagtgt
3001 ggactacaat gaaaaactca gctttgaggc cccaccaagc atctggtcaa ggatagtcaa
3061 ctttggctca ggttggggct tctgggtctc ccccagcctg ttcataacat caacccacgt
3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtacacaa
3181 gtcaggcgaa ttttgtcgct tgaggttccc aaaaccaatc aggactgatg tgactggcat
3241 gatcttggaa gaaggtgcac ccgaaggcac cgtggtcaca ctactcatca aaaggtctac
3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaggg
3361 gcgcactgtt ggaggtcaga tgggcatgct tctgacagga tccaacgcca aaagcatgga
3421 tctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag gaaatgacta
3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac
3541 ccaggggggt gaaggggaag ctacacttga aggtggtgac agtaagggaa catactgtgg
3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag
3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga
3721 ccccagagtc aaggatggcc cctcgttgca gcaagtcatg agggaccagc tgaaaccatt
3781 tacagagcct aggggtaagc caccaaagcc aagcgtgtta gaagctgcca agaaaaccat
3841 catcaatgtc cttgaacaaa caattgaccc acctgagaag tggtcgttcg cacaagcttg
3901 cgcgtccctt gacaagacca cttctagcgg ccatccgcac cacatgcgga aaaacgactg
3961 ctggaacggg gagtccttca cgggtaagct agcagaccag gcttccaagg ccaatctgat
4021 gtttgaagaa gggaagaaca tgaccccagt ctacacaggt gcacttaagg atgaattagt
4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttagc
4141 aaccatgatc cggtgtgctc gagcattcgg aggcttaatg gatgagctca aagcacactg
4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga
4261 gaagcattcc aggtacagat accactatga tgctgattac tctcggtggg attcaacaca
4321 acagagagcc gtgctggcag ccgctctaga aatcatggtt aaattctcct cagaaccaca
4381 tttggctcag gtagtagcag aagaccttct ttctcctagc gtggtggatg taggtgactt
4441 cacaatatca atcaacgagg gtcttccctc tggggtgccc tgcacctccc aatggaactc
4501 catcgcccac tggcttctca ctctctgtgc actctccgaa gttacaaatt tgtccccaga
4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagtacaga
4621 cataaaatta gacccagaga agttgacagc aaagcttaag gaatacgggt tgaaaccaac
4681 ccgccctgat aaaactgaag gacctcttgt tatttctgaa gacttagatg gtttgacttt
4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc
4801 aatactcagg caaatgtact ggactagggg ccccaaccat gaagatccat ctgaatcaat
4861 gattccacac tctcaaagac ccatacaatt gatgtcctta ctgggagagg ccgcactcca
4921 cggcccaaca ttctacagta aaatcagcaa attggttatt gcagagctaa aagaaggtgg
4981 tatggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccag cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagttcacag
5281 tgtcccccag aaacgctcca ggtgaaatat tatggagcgc gcccttaggc cctgatctga
5341 atccctacct atctcatttg gccagaatgt ataatggtta tgcaggtggc tttgaagtgc
5401 aggtgatcct cgcggggaac gcgttcaccg ccggaaaaat tatatttgca gcagtcccac
5461 caaattttcc aactgaaggc ttgagtccca gccaggtcac tatgttcccc cacataatag
5521 tggatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataacttct
5581 atcactataa tcagtcaaat gattctacca ttaaattgat agcaatgctg tatacaccac
5641 ttagggctaa taacgctggg gaagatgtct tcacagtctc ttgtcgagtt ctcacgaggc
5701 catcccctga ttttgatttt atatttttgg tgccacctac agttgagtca agaactaaac
5761 catttactgt cccaatctta actgttgaag aaatgaccaa ctcaagattc cccattcctt
5821 tggaaaaatt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat
5881 gcactactga tggcgtgctc ttaggcacca cccaactgtc tcctgtcaac atctgcacct
5941 tcagagggga tgtcacccac attgcaggtt ctcgtaatta cacaatgaat ttggcttctc
6001 taaattggaa caattatgac ccaacagaag aaattccagc ccctctagga actccagatt
6061 tcgtgggaaa gatccaaggt gtgctcaccc aaaccacaaa gggagatggc tcgacccgtg
6121 gccataaagc tacagtttat actgggagtg ccccctttac tccaaagctg ggcagtgttc
6181 aattcagtac tgatacagaa aatgattttg aaactcacca aaacacaaaa ttcaccccag
6241 tcggcgtcat ccaggatggt ggcaccaccc accgaaatga accccaacaa tgggcgctcc
6301 caagttattc aggtagaaat gtccagaatg tacacctagc ccctgctgta gcccccactt
6361 ttccgggtga acaacttctt ttctttaggt ccactatgcc cggatgcagc gggtacccca
6421 acatggattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag
6481 ctccagcaca atctgatgtg gctctattga gatttgtgaa tccagacacg ggtagggtcc
6541 tgtttgagtg taaacttcat aaatcaggct atgtcacagt ggctcacacc ggccagcatg
6601 atttggtcat cccccccaat ggttatttta ggtttgattc ctgggttaat caattctaca
6661 cgcttgcccc catgggaaat ggaacggggc gtagacgtgc tttataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttag ctctggactt ggctccctaa tcaatgctgg
6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcttc
6841 cttccagttt agcagtaatc tacaacaggc ttcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaggtca aacaggcaat
6961 gcttttagaa ggtggattct ttgaaacaga tgcagcccgt ggggcaatca acgcccctat
7021 gacaaaggct ttggactgga gcggaacaag gtactgggcc cctgatgcta ggactacaac
7081 atacaatgca ggccgctttt ccacccttca accttcgggg gcactgccag gaagaatcag
7141 tcccaggact cctactcccg ctcggggctc ccccagtata tcttctaatg cttctactgc
7201 tacttctata tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg
7261 caccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa
7321 cagggatttg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 ggctggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta ggcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt ccttttcttt agtgtctttt
//