Typing tool
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Complete norovirus genomes
HM635103 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..1584 ORF2: 1565..3187 ORF3: 3187..3538LOCUS HM635103 3538 bp RNA linear VRL 26-JUL-2012 DEFINITION Norovirus Hu/GII.4/Seoul/0952/2010/KOR non-structural protein gene, partial cds; major capsid protein gene, complete cds; and minor capsid protein gene, partial cds. ACCESSION HM635103 VERSION HM635103.2 KEYWORDS . SOURCE Norovirus Hu/GII.4/Seoul/0952/2010/KOR ORGANISM Norovirus Hu/GII.4/Seoul/0952/2010/KOR Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3538) AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S. TITLE Emergence of norovirus GII-4/2008 variant and recombinant strains in Seoul, Korea JOURNAL Arch. Virol. 156 (2), 323-329 (2011) PUBMED 21053029 REFERENCE 2 (bases 1 to 3538) AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S. TITLE Direct Submission JOURNAL Submitted (06-JUL-2010) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University Colege of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) REFERENCE 3 (bases 1 to 3538) AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S. TITLE Direct Submission JOURNAL Submitted (26-JUL-2012) Department of Pediatrics and Laboratory Medicine, Sanggye Paik Hospital, Inje University Colege of Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of Korea (South Korea) REMARK Sequence update by submitter COMMENT On Jul 26, 2012 this sequence version replaced HM635103.1. FEATURES Location/Qualifiers source 1..3538 /organism="Norovirus Hu/GII.4/Seoul/0952/2010/KOR" /mol_type="genomic RNA" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:943056" /country="South Korea" /collection_date="04-Feb-2010" CDS <1..1584 /codon_start=1 /product="non-structural protein" /protein_id="ADV37812.2" /translation="NTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPTLSTKTK FWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPRPSVLEA AKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHVRKNDCWNGESFTGKLADQ ASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGG LMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAAL EIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLT LCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKT EGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPH SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS TWEGDRNLAPSFVNEDGVE" CDS 1565..3187 /codon_start=1 /product="major capsid protein" /protein_id="ADV37813.2" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDLETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3187..>3538 /codon_start=1 /product="minor capsid protein" /protein_id="AFO66266.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYW" ORIGIN 1 aacactgtca tatgtgccac ccaggggagt gaaggagagg ctacacttga aggtggtgac 61 aacaagggga catactgtgg tgcaccaatc ctaggcccag ggagtgcccc aacacttagc 121 accaagacca aattctggag atcgtccaca gcatcactcc cacctggcac ctatgaacca 181 gcctatcttg gtggcaagga ccctagagtc aagggtggcc cttcactaca gcaagtcatg 241 agggaacagt tgaagccatt cacagagcca aggggcaagc caccaagacc aagtgtatta 301 gaagctgcca agaagaccat catcaatgtc cttgagcaaa caattgatcc acctgagaaa 361 tggtcgttcg cacaagcctg cgcgtccctt gacaagacca cttccagtgg tcatccgcac 421 cacgtgcgga aaaacgactg ctggaacggg gagtccttca caggcaagct ggcagaccag 481 gcttccaagg ccaacctgat gtttgaagaa gggaagaaca tgaccccagt ctacacagct 541 gcgctcaagg atgagttggt taaaactgac aaaatttatg gtaagatcaa gaagaggctt 601 ctctggggct cggacttggc gaccatgatc cggtgtgctc gagcattcgg aggcctaatg 661 gatgaactca aagcacactg tgtcacactt cccattagag ttggcatgaa tatgaatgag 721 gatggcccca tcatcttcga gaggcattcc aggtacacat atcactatga tgctgattac 781 tctcgatggg attcaacaca acagagagcc gtgttggcag cagctctaga aatcatggtt 841 aaattctccc cagaaccaca tttggctcag gtagtcgcgg aagaccttct ttctcctagc 901 gtggtggacg tgggcgactt cacaatatca atcaacgagg gtcttccctc tggggtgccc 961 tgcacctccc aatggaactc catcgcccac tggcttctca ctctctgtgc gctctctgaa 1021 gtcacaaacc tatcccctga taccatacag gctaattccc tcttctcttt ttatggtgat 1081 gatgaaattg ttagcacaga cataaaattg gacccagaga aattgacagc aaagctcaga 1141 gaatatgggc taaaaccaac ccgccctgac aaaactgaag gaccccttgt catctctgaa 1201 gacctgaatg gcctaacttt cctgcggaga actgtgaccc gcgacccagc tggttggttt 1261 ggaaaactgg agcagagttc aatactcagg caaatgtact ggactagggg tcccaaccat 1321 ggagacccat ctgaaacaat gattccacac tcccaaagac ccatacaatt gatgtcccta 1381 ctgggggagg ccgctctcca cggcccagca ttttacagca aaatcagcaa attggtcatt 1441 gcagagctaa aagaaggtgg catggatttt tacgtgccca ggcaagagcc aatgttcaga 1501 tggatgagat tctcagatct gagcacgtgg gagggcgatc gcaatctggc tcccagtttt 1561 gtgaatgaag atggcgtcga gtgacgccaa cccatctgat gggtccacag ccaacctcgt 1621 cccagaggtc aacaatgagg ttatggcttt ggagcccgta gttggtgccg ccattgcggc 1681 acctgtagcg ggccaacaaa acgtaattga cccctggatt agaaacaatt ttgtacaagc 1741 ccctggtgga gagtttacag tatcccctag aaacgctcca ggtgaaatac tatggagcgc 1801 gcccttaggc cctgatttga atccctacct ttcccatttg gccagaatgt acaatggtta 1861 tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat 1921 catatttgca gcagtcccac caaatttccc gactgaaggt ttgagcccca gccaggtcac 1981 tatgttcccc cacataatag tagatgttag gcaattggaa cctgtgttga tccccttacc 2041 cgatgttagg aataatttct accattataa tcaatcaaat gaccccacca tcaaattgat 2101 agcaatgttg tacacaccac ttagggctaa taatgccggg gacgatgtct tcacagtttc 2161 ttgtcgagtt ctcacgagac catcccccga ttttgatttc atatttttgg tgccacccac 2221 agttgaatca agaactaaac cattctctgt tccagtttta actgttgagg agatgaccaa 2281 ttcaaggttc cccattcctt tggaaaagtt gttcacgggc cccagtagtg cctttgttgt 2341 tcaaccacaa aacggcaggt gcacgactga tggcgtgctc ctaggtacta cccaactgtc 2401 tcctgtcaac atctgcacct tcagagggga tgtcacccat attccaggca gtcgtaacta 2461 cacaatgaat ttggcctccc aaaattggaa cagttacgat ccaacagaag aaatcccagc 2521 ccctctagga actccagatt tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag 2581 gacaaatggc tcgacccgcg gccacaaagc tacagtgtac actgggagcg ccgacttttc 2641 tccaaaactg ggtagagttc aatttgccac tgacacagac aatgatcttg aaactaacca 2701 aaacacaaag ttcaccccag tcggtgttat ccaggatggt agtactaccc cccgaaatga 2761 accccaacaa tgggtgctcc caagttactc aggcagaaac attcataatg tgcacctggc 2821 ccccgctgta gcccccactt tcccgggcga gcagctcctc ttcttcagat ctactatgcc 2881 cggatgcagc gggtacccca acatggattt ggactgtctg ctcccccagg aatgggtgca 2941 gtacttctac caggaggcag ccccagcaca atctgatgtg gctctgttaa gatttgtgaa 3001 tccagacaca ggtagggttt tgtttgagtg taagcttcat aaatcaggtt atgttacagt 3061 ggctcacact ggccagcatg atttggttat cccccccaat ggttatttta gatttgattc 3121 ctgggtcaac cagttctaca cacttgcccc catgggaaat gggacggggc gtagacgtgc 3181 attataatgg ctggagcttt ctttgctgga ttggcatctg acgtccttgg ctctggactt 3241 ggttccctaa tcaatgctgg ggctggggcc atcaaccaaa aagttgaatt tgaaaataac 3301 agaaaattgc aacaggcttc cttccaattt agtagcaatc tacaacaggc ctcctttcaa 3361 catgacaaag agatgctcca agcacaaatt gaggccacca aaaagttgca acaggaaatg 3421 atgagagtta aacaagcaat gctcctagag ggtggattct ctgagacaga tgcagcccgt 3481 ggggcaatca acgcccccat gacaaaaact ttggactgga gcggaacaag gtactggg //