Typing tool
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Typing tool
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Complete norovirus genomes
| HM635101 | GII.4 New Orleans | |
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| GII.P4 Hunter |
ORF1: 1..1584
ORF2: 1565..3187
ORF3: 3187..3538
LOCUS HM635101 3538 bp RNA linear VRL 26-JUL-2012
DEFINITION Norovirus Hu/GII.4/Seoul/0921/2009/KOR non-structural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION HM635101
VERSION HM635101.2
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Seoul/0921/2009/KOR
ORGANISM Norovirus Hu/GII.4/Seoul/0921/2009/KOR
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3538)
AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
TITLE Emergence of norovirus GII-4/2008 variant and recombinant strains
in Seoul, Korea
JOURNAL Arch. Virol. 156 (2), 323-329 (2011)
PUBMED 21053029
REFERENCE 2 (bases 1 to 3538)
AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
TITLE Direct Submission
JOURNAL Submitted (06-JUL-2010) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University Colege of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
REFERENCE 3 (bases 1 to 3538)
AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
TITLE Direct Submission
JOURNAL Submitted (26-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University Colege of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
REMARK Sequence update by submitter
COMMENT On Jul 26, 2012 this sequence version replaced HM635101.1.
FEATURES Location/Qualifiers
source 1..3538
/organism="Norovirus Hu/GII.4/Seoul/0921/2009/KOR"
/mol_type="genomic RNA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:943050"
/country="South Korea"
/collection_date="12-Dec-2009"
CDS <1..1584
/codon_start=1
/product="non-structural protein"
/protein_id="ADV37808.2"
/translation="NTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTK
FWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEA
AKKTIINVLEQTIDPPEEWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ
ASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGG
LMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAAL
EIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLT
LCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKT
EGPLAISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPH
SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS
TWEGDRNLAPSFVNEDGVE"
CDS 1565..3187
/codon_start=1
/product="major capsid protein"
/protein_id="ADV37809.2"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3187..>3538
/codon_start=1
/product="minor capsid protein"
/protein_id="AFO66265.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYW"
ORIGIN
1 aacactgtca tatgtgccac ccaggggagt gagggagagg ctacactcga aggtggtgac
61 aataaaggga catactgtgg tgcaccaatc ctaggcccag ggagtgcccc aaagcttagc
121 accaagacca aattctggag atcgtccaca gcaccactcc cacctggcac ctatgaacca
181 gcctatcttg gtggcaagga tcccagagtc aagggtggcc cttcactgca gcaggtcatg
241 agggatcagc tgaagccatt cacagagccc aggggcaagc caccaaagcc aagtgtgttg
301 gaagctgcta agaaaaccat catcaatgtc cttgaacaaa caattgatcc acctgaggaa
361 tggtcgttcg cacaagcctg cgcgtccctt gacaagacca cctccagtgg ccatccgcat
421 cacatgcgga aaaacgactg ctggaacggg gagtccttca caggtaagct ggcagaccag
481 gcttccaagg ccaacctgat gtttgaagaa gggaagaaca tgacgccagt ctatacagct
541 gcacttaagg acgaattagt taaaactgac aaaatttatg gcaagatcaa gaagaggctt
601 ctctggggct cggatttggc gaccatgatc cggtgtgctc gagcattcgg aggcctaatg
661 gatgaactca aagcgcactg tgtcacactt cccattagag ttggtatgaa tatgaatgag
721 gatggcccca tcatcttcga gaggcactct aggtacacat accactatga tgctgattac
781 tctcgatggg attcaacaca acagagagcc gtgttggcag cagctctaga aatcatggtt
841 aagttctccc cagaaccaca tttggcccag gtagtcgcag aagaccttct ttcccctagc
901 gtggtggacg tgggtgactt cacaatatca attaacgagg gtcttccctc tggggtgcct
961 tgcacctccc aatggaactc catcgcccac tggcttctca ccctctgcgc gctctctgaa
1021 gttaccaact tgtctcctga caccatacaa gctaattccc tcttctcttt ttatggtgat
1081 gatgaaattg ttagcacaga cataaaattg gacccagaaa agttgacagc aaagctcagg
1141 gaatatgggt taaagccaac ccgccccgac aaaactgaag gaccccttgc catctctgaa
1201 gacttgaatg gcctgacttt cctgcggaga actgtgaccc gcgacccagc tggttggttt
1261 ggaaaactgg agcagagttc aatactcaga caaatgtact ggactagggg ttccaatcat
1321 gaagacccat ctgaaacaat gattccacac tcccaaagac ccatacaact gatgtcccta
1381 ctgggggagg ccgcactcca cggcccagca ttctacagca agatcagcaa gttagtcatt
1441 gcagagctaa aagaaggtgg catggatttt tacgtgccca gacaagagcc aatgttcaga
1501 tggatgagat tctcagatct gagcacgtgg gagggcgatc gcaatctggc tcccagtttt
1561 gtgaatgaag atggcgtcga gtgacgccaa cccatctgat gggtccacag ccaaccttgt
1621 cccagaggtc aacaatgagg ttatggcttt ggagcccgtt gttggtgccg ccattgcggc
1681 acctgtagcg ggccaacaga atgtaattga cccctggatt agaaacaatt ttgtacaagc
1741 ccctggcgga gagttcacag tatcccctag aaacgctcca ggtgaaatac tatggagcgc
1801 gcccttaggc cctgatttga atccctacct ttcccatttg gccagaatgt acaatggcta
1861 tgccggcggt tttgaagtgc aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat
1921 catatttgca gcagtcccac caaatttccc gactgaaggt ttgagcccca gccaggtcac
1981 tatgttcccc cacataatag tagatgttag gcaattggaa cctgtgttga tccccttacc
2041 cgatgttagg aataatttct accattataa tcaatcaaat gaccccacca tcaaattgat
2101 agcaatgttg tatacaccac ttagggctaa taatgctggg gacgatgtct tcacagtttc
2161 ttgtcgggtt ctcacgagac catcccccga ttttgatttc atatttttag taccacccac
2221 agttgagtca agaactaaac cattctctgt cccaatttta actgttgagg agatgaccaa
2281 ttcaagattc cccattcctt tggaaaagtt gttcacgggt cccagcagtg cctttgttgt
2341 tcaaccacaa aacggcaggt gcacgactga tggcgtgctc ctaggtacca ctcaactgtc
2401 tcctgtcaac atctgcacct tcagagggga tgtcacccat attacaggta gtcgtaacta
2461 cacaatgaat ttggctactc aaaattggaa cagttatgac ccaacagaag aaatcccagc
2521 ccctctagga actccagatt tcgtggggaa gattcaaggt gtgctcaccc aaaccacaag
2581 ggcagatggc tcgacccgcg gccacaaagc tacagtgtac actgggagcg ccgacttcgc
2641 tccaaaactg ggtagagttc aatttgccac tgacacagac aatgattttg atgctaacca
2701 aaacacaaag ttcaccccag tcggtgttat ccaggatggt gacactgccc accgaaatga
2761 accccaacaa tgggtgctcc caagttactc aggcagaaat agtcacaatg tgcacctggc
2821 ccccgctgta gcccccactt ttccgggtga gcaactcctc ttcttcagat ccactatgcc
2881 cggatgcagc gggtacccca acatggattt ggactgtctg ctcccccagg aatgggtgca
2941 gtacttctat caagaggcag ccccagcaca atctgatgtg gctttgctaa gatttgtgaa
3001 tccagacaca ggtagggttt tgtttgagtg taagcttcat aaatcaggct atgttacagt
3061 ggctcacacc ggccaacatg atttagttat cccccccaat ggttacttta gatttgattc
3121 ctgggtcaac cagttctaca cacttgcccc catgggaaat ggaacggggc gtagacgtgc
3181 attataatgg ctggagcttt ctttgctgga ttggcgtctg acgtccttgg ctccggactt
3241 ggttccctga tcaatgccgg ggctggggcc atcaaccaaa aagttgaatt tgaaaataac
3301 agaaaattgc aacaagcttc cttccaattt agcagcaatc tacaacaggc ttcctttcaa
3361 catgataaag agatgctcca agcacaaatt gaggccacca aaaagttgca acaggaaatg
3421 atgagagtta aacaggcaat gctcctagag ggtgggttct ctgagacaga tgcagcccgt
3481 ggggcaatca acgcccccat gacaaaggct ttggactgga gcggaacaag gtactggg
//