Typing tool
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Typing tool
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Complete norovirus genomes
| HM635100 | GII.4 New Orleans | |
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| GII.P4 Hunter |
ORF1: 1..1584
ORF2: 1565..3187
ORF3: 3187..3538
LOCUS HM635100 3538 bp RNA linear VRL 26-JUL-2012
DEFINITION Norovirus Hu/GII.4/Seoul/0654/2009/KOR non-structural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
capsid protein gene, partial cds.
ACCESSION HM635100
VERSION HM635100.2
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Seoul/0654/2009/KOR
ORGANISM Norovirus Hu/GII.4/Seoul/0654/2009/KOR
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3538)
AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
TITLE Emergence of norovirus GII-4/2008 variant and recombinant strains
in Seoul, Korea
JOURNAL Arch. Virol. 156 (2), 323-329 (2011)
PUBMED 21053029
REFERENCE 2 (bases 1 to 3538)
AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
TITLE Direct Submission
JOURNAL Submitted (06-JUL-2010) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University Colege of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
REFERENCE 3 (bases 1 to 3538)
AUTHORS Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
TITLE Direct Submission
JOURNAL Submitted (26-JUL-2012) Department of Pediatrics and Laboratory
Medicine, Sanggye Paik Hospital, Inje University Colege of
Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
Korea (South Korea)
REMARK Sequence update by submitter
COMMENT On Jul 26, 2012 this sequence version replaced HM635100.1.
FEATURES Location/Qualifiers
source 1..3538
/organism="Norovirus Hu/GII.4/Seoul/0654/2009/KOR"
/mol_type="genomic RNA"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:943042"
/country="South Korea"
/collection_date="13-Apr-2009"
CDS <1..1584
/codon_start=1
/product="non-structural protein"
/protein_id="ADV37806.2"
/translation="NTVICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTK
FWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEA
AKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ
ASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGG
LMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAAL
EIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLT
LCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKT
EGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPH
SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS
TWEGDRNLAPSFVNEDGVE"
CDS 1565..3187
/codon_start=1
/product="major capsid protein"
/protein_id="ADV37807.2"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3187..>3538
/codon_start=1
/product="minor capsid protein"
/protein_id="AFO66264.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYW"
ORIGIN
1 aacactgtca tatgtgccac ccaggggagt gagggagagg ctacacttga aggtggtgac
61 aataaaggga catactgtgg tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc
121 accaagacca aattctggag atcgtccaca gcaccactcc cacctggcac ctatgaacca
181 gcctatcttg gtggtaagga tcccagagtc aagggtgggc cttcactaca gcaggtcatg
241 agggatcagc tgaagccatt cacagagccc aggggcaagc caccaaagcc aagtgtgttg
301 gaagctgcta agaaaaccat catcaatgtc cttgagcaaa caattgatcc acctgagaaa
361 tggtcgttcg cacaagcttg cgcgtccctt gataagacca cctccagtgg ccacccgcat
421 cacatgcgga aaaacgactg ctggaacggg gagtccttca caggcaagct ggcagaccag
481 gcttccaagg ccaacctgat gtttgaagaa gggaagaaca tgacgccagt ctatacagct
541 gcgcttaagg atgaattagt taaaactgac aaaatttatg gcaagatcaa gaaaaggctt
601 ctctggggct cggatttggc gaccatgatc cggtgtgctc gagcattcgg aggcctaatg
661 gatgaactca aagcgcactg tgtcacactt cccatcagag ttggtatgaa tatgaatgag
721 gatggcccca tcatcttcga gaggcactcc aggtacacgt accactatga tgctgattac
781 tctcgatggg attcaacaca acagagagcc gtgttggcag cagctctaga aatcatggtt
841 aagttctccc cagaaccaca tttggctcag gtagtcgcag aagaccttct ttctcctagc
901 gtggtggacg tgggtgactt cacaatatca atcaacgagg gtcttccctc cggggtgccc
961 tgcacctccc aatggaactc catcgcccac tggcttctca ctctctgtgc actctctgaa
1021 gttacaaact tgtctcctga caccatacag gctaattctc tcttctcttt ttatggtgat
1081 gatgaaattg ttagtacaga cataaaattg gacccagaaa agttgacagc aaaactcagg
1141 gaatacgggt taaaaccgac ccgccctgac aaaactgaag gaccccttgt catctctgaa
1201 gacttgaatg gcctgacttt cctgcggaga actgtgaccc gcgacccagc tggttggttt
1261 ggaaaattgg agcagagttc aatactcagg caaatgtact ggactagggg ttccaaccat
1321 gaagacccat ctgaaacaat gattccacac tctcaaagac ccatacaatt gatgtcccta
1381 ctgggggagg ccgcactcca cggcccagca ttctacagca aaatcagcaa attagtcatt
1441 gcagagctaa aagaaggtgg catggatttt tacgtgccca gacaagagcc aatgttcaga
1501 tggatgagat tctcagatct gagcacgtgg gagggcgatc gcaatctggc tcccagtttt
1561 gtgaatgaag atggcgtcga gtgacgccaa cccatctgat gggtccacag ccaacctcgt
1621 cccagaggtc aacaatgagg ttatggcttt ggagcccgta gttggtgccg ccattgcggc
1681 gcctgtagcg ggccaacaaa acgtaattga cccctggatt agaaacaatt ttgtacaagc
1741 ccctggtgga gagtttacag tatcccctag aaacgctcca ggtgaaatac tatggagcgc
1801 gcccttaggc cctgatttga atccctacct ttcccatttg gccagaatgt acaatggtta
1861 tgcaggtggt tttgaagtgc aggtaatcct cgcggggaac gcgttcaccg ccgggaaaat
1921 catatttgca gcagtcccac caaatttccc gactgaaggt ttgagcccca gccaggtcac
1981 tatgttcccc cacataatag tagatgttag gcaattggaa cctgtgttga tccccttacc
2041 cgatgttagg aataatttct accattataa tcaatcaaat gaccccacca tcaaattgat
2101 agcaatgttg tatacaccac ttagggctaa taatgctggg gacgatgtct tcacagtttc
2161 ttgtcgggta ctcacgagac catcccccga ttttgatttc atatttctag tgccacccac
2221 agttgaatca agaactaaac cattctctgt cccaatttta actgttgagg agatgaccaa
2281 ttcaagattc cccattcctt tggaaaagct gttcacgggc cccagcagtg cctttgttgt
2341 tcaaccacaa aacggcaggt gcacgactga tggcgtgctc ctaggtacca cccaactgtc
2401 tcctgtcaac atctgcacct tcagagggga tgtcacccat attacaggta gtcgtaacta
2461 cacaatgaat ttggctactc aaaattggaa cagttatgac ccaacagaag aaatcccagc
2521 ccctctagga actccagatt tcgtgggaaa gatccaaggt gtgctcaccc aaaccacgag
2581 ggcagatggc tcgacccgtg gccacaaagc tacagtgtac actgggagcg ccgactttgc
2641 tccaaaactg ggtagagttc aatttgccac tgacacagac aatgattttg atgctaacca
2701 aaacacaaag ttcaccccag tcggtgtcat ccaggatggt gatactgccc accgaaatga
2761 accccaacaa tgggtgctcc caagttactc aggcagaaat agtcacaatg tgcacctggc
2821 ccccgctgta gcccccactt ttccgggcga gcaacttctc ttcttcagat ccactatgcc
2881 cggatgcagc gggtacccca acatggattt ggactgtctg cttccccagg aatgggtgca
2941 gtatttctat caagaggcag ccccagcaca atctgatgtg gctctgctaa gatttgtgaa
3001 tccagacaca ggtagggttt tgtttgagtg taagcttcat aaatcaggct atgttacagt
3061 ggctcacacc ggccaacatg atttggttat cccccccaat ggttatttca gatttgattc
3121 ctgggtcaac cagttctaca cacttgcccc catgggaaat ggaacggggc gtagacgtgc
3181 attataatgg ctggagcttt ctttgctgga ttggcatctg acgtccttgg atccggactt
3241 ggttctctga tcaatgccgg ggctggggcc atcaaccaaa aagttgaatt tgaaaacaac
3301 agaaaattgc aacaagcttc cttccaattt agtagcaatc tacaacaggc ttcctttcaa
3361 catgataaag agatgctcca agcacaaatt gaggccacca aaaagttgca acaggaaatg
3421 atgagagtta aacaggcaat gctcctagag ggtggattct ctgagacaga tgcagcccgt
3481 ggggcaatca acgcccccat gacaaaggct ttggactgga gcggaacaag gtactggg
//