Human calicivirus
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Complete norovirus genomes

HM635099	GII.4 New Orleans
	GII.P4 Hunter

Length: 2,764 | 3 CDS

ORF1: 1..810
ORF2: 791..2413
ORF3: 2413..2764
LOCUS       HM635099                2764 bp    RNA     linear   VRL 26-JUL-2012
DEFINITION  Norovirus Hu/GII.4/Seoul/0389/2009/KOR non-structural protein gene,
            partial cds; major capsid protein gene, complete cds; and minor
            capsid protein gene, partial cds.
ACCESSION   HM635099
VERSION     HM635099.2
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Seoul/0389/2009/KOR
  ORGANISM  Norovirus Hu/GII.4/Seoul/0389/2009/KOR
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 2764)
  AUTHORS   Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
  TITLE     Emergence of norovirus GII-4/2008 variant and recombinant strains
            in Seoul, Korea
  JOURNAL   Arch. Virol. 156 (2), 323-329 (2011)
   PUBMED   21053029
REFERENCE   2  (bases 1 to 2764)
  AUTHORS   Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2010) Department of Pediatrics and Laboratory
            Medicine, Sanggye Paik Hospital, Inje University Colege of
            Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
            Korea (South Korea)
REFERENCE   3  (bases 1 to 2764)
  AUTHORS   Han,T.H., Kim,C.H., Chung,J.Y., Park,S.H. and Hwang,E.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2012) Department of Pediatrics and Laboratory
            Medicine, Sanggye Paik Hospital, Inje University Colege of
            Medicine, 761-1 Sanggye-7Dong, Nowon-Gu, Seoul 139-707, Republic of
            Korea (South Korea)
  REMARK    Sequence update by submitter
COMMENT     On Jul 26, 2012 this sequence version replaced HM635099.1.
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Norovirus Hu/GII.4/Seoul/0389/2009/KOR"
                     /mol_type="genomic RNA"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:943025"
                     /country="South Korea"
                     /collection_date="07-Jan-2009"
     CDS             <1..810
                     /codon_start=1
                     /product="non-structural protein"
                     /protein_id="ADV37804.2"
                     /translation="DYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVV
                     DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGD
                     DEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLAISEDLNGLTFLRRTVTRDPAG
                     WFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKIS
                     KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             791..2413
                     /codon_start=1
                     /product="major capsid protein"
                     /protein_id="ADV37805.2"
                     /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
                     TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
                     DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
                     CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             2413..>2764
                     /codon_start=1
                     /product="minor capsid protein"
                     /protein_id="AFO66263.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
                     APMTKALDWSGTRYW"
ORIGIN      
        1 gactactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctagaaatt
       61 atggttaagt tctccccaga accacatttg gcccaggtag tcgcagaaga ccttctttct
      121 cctagcgtgg tggacgtggg tgacttcaca atatcaatta acgagggtct tccctctggg
      181 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcaccct ctgtgcgctc
      241 tctgaagtta caaacttgtc tcctgacacc atacaagcta attccctctt ctctttttat
      301 ggtgatgatg aaattgttag cacagacata aaattggacc cagaaaagtt gacagcaaag
      361 ctcagggaat atgggttaaa accaacccgc cccgacaaaa ctgaaggacc ccttgccatc
      421 tctgaagact tgaatggcct gactttcttg cggagaactg tgacccgcga cccagctggt
      481 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggttcc
      541 aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat acaactgatg
      601 tccctactgg gggaggccgc actccacggc ccagcattct acagcaaaat cagcaagtta
      661 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg
      721 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc
      781 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccacagccaa
      841 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg gtgccgccat
      901 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa acaattttgt
      961 acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg
     1021 gagcgcgccc ttaggccctg atttgaatcc ctacctttcc catttggcca gaatgtacaa
     1081 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg
     1141 aaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca
     1201 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ctggaacctg tgttgatccc
     1261 cttacccgat gttaggaata atttctatca ctacaatcaa tcaaatgacc ccaccatcaa
     1321 attgatagca atgttgtata caccacttag ggctaataat gctggggacg atgtcttcac
     1381 agtttcttgt cgggtactca cgagaccatc ccccgatttt gatttcatat ttctagtgcc
     1441 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca attttaactg ttgaggagat
     1501 gaccaattca agattcccca ttcctttgga aaagctgttc acgggcccca gcagtgcctt
     1561 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctag gtaccaccca
     1621 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatatta caggtagtcg
     1681 taactacaca atgaatttgg ctactcaaaa ttggaacagt tatgacccaa cagaagaaat
     1741 cccagcccct ctaggaactc cagatttcgt gggaaagatc caaggtgtgc tcacccaaac
     1801 cacgagggca gatggctcga cccgtggcca caaagctaca gtgtacactg ggagcgccga
     1861 ctttgctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgatgc
     1921 taaccaaaac acaaagttca ccccagtcgg tgtcatccag gatggtgata ctgcccaccg
     1981 aaatgaaccc caacaatggg tgctcccaag ttactcaggc agaaatagtc acaatgtgca
     2041 cctggccccc gctgtagccc ccacttttcc gggcgagcaa cttctcttct tcagatccac
     2101 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgcttc cccaggaatg
     2161 ggtgcagtat ttctatcaag aggcagcccc agcacaatct gatgtggctc tgctaagatt
     2221 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt
     2281 tacagtggct cacaccggcc aacatgattt ggttatcccc cccaatggtt atttcagatt
     2341 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggaa cggggcgtag
     2401 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggatcc
     2461 ggacttggtt ctctgatcaa tgccggggct ggggccatca accaaaaagt tgaatttgaa
     2521 aacaacagaa aattgcaaca agcttccttc caatttagta gcaatctaca acaggcttcc
     2581 tttcaacatg ataaagagat gctccaagca caaattgagg caacaaaaaa gttgcaacag
     2641 gaaatgatga gagttaaaca agcaatgctc ctagagggtg gattctctga gacagatgca
     2701 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac
     2761 tggg
//