Human calicivirus
Typing tool

Complete norovirus genomes

HM625866  GII.4 New Orleans
 GII.P4 New Orleans

Length: 3,230 | 3 CDS 

ORF1: 1..775
ORF2: 756..2378
ORF3: 2378..3184

LOCUS       HM625866                3230 bp    RNA     linear   VRL 25-JUL-2016
DEFINITION  Norovirus Hu/GII.4/Pecs/HUN4322/2010/HUN RNA-dependent RNA
            polymerase gene, partial cds; and major capsid protein and minor
            capsid protein genes, complete cds.
ACCESSION   HM625866
VERSION     HM625866.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Pecs/HUN4322/2010/HUN
  ORGANISM  Norovirus Hu/GII.4/Pecs/HUN4322/2010/HUN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3230)
  AUTHORS   Reuter,G., Boros,A. and Pankovics,P.
  TITLE     Epidemic spread of norovirus GII4 variant 2010 in Hungary
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3230)
  AUTHORS   Reuter,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2010) Regional Laboratory of Virology, ANTSZ
            Baranya County Institute of State Public Health Service, Szabadsag
            u. 7., Pecs H-7623, Hungary
FEATURES             Location/Qualifiers
     source          1..3230
                     /organism="Norovirus Hu/GII.4/Pecs/HUN4322/2010/HUN"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII4/Pecs/HUN4322/2010/HUN"
                     /isolation_source="fecal sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:909664"
                     /country="Hungary"
                     /collection_date="Feb-2010"
                     /note="genotype: GII4 variant 2010"
     CDS             <1..775
                     /note="PRF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ADO85551.1"
                     /translation="VLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEG
                     LPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDP
                     EKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILR
                     QMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGM
                     DFYVPRQEPMFRWMRFSDLTTWEGDRNLAPSFVNEDGVE"
     CDS             756..2378
                     /note="ORF2"
                     /codon_start=1
                     /product="major capsid protein"
                     /protein_id="ADO85552.1"
                     /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAASAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTESPTNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPA
                     TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPVGTPDFVGKIQGVL
                     TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
                     STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
                     CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             2378..3184
                     /note="ORF3"
                     /codon_start=1
                     /product="minor capsid protein"
                     /protein_id="ADO85553.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
                     APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGAPPGRANLRATVPARGSSSTSS
                     NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
                     SFVTPPFSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
     3'UTR           3185..>3230
ORIGIN      
        1 cgtgttggca gcagctctcg aaatcatggt taaattctcc ccagaaccac atttggctca
       61 ggtagtcgcg gaagaccttc tttctcctag cgtggtggac gtgggcgact tcacaatatc
      121 aatcaacgag ggtcttccct ctggggtgcc ctgcacctcc caatggaact ccatcgccca
      181 ctggcttctc actctctgtg cgctctccga agtcacaaac ctatcccctg acaccataca
      241 ggctaactcc ctcttctctt tttatggtga tgatgaaatt gttagcacag acataaaatt
      301 ggacccagag aaattgacag caaagctcag agaatatggg ttaaaaccaa cccgccctga
      361 caaaactgaa ggaccccttg tcatctctga agacctgaat ggcctaactt tcctgcggag
      421 aactgtgacc cgcgacccag ctggttggtt tggaaaactg gagcagagtt caatactcag
      481 gcaaatgtac tggactaggg gtcccaacca tggagaccca tctgaaacaa tgattccaca
      541 ctcccaaaga cccatacaat tgatgtccct actgggggag gccgctctcc acggcccagc
      601 cttttatagc aaaatcagca agttggtcat tgcagagcta aaagaaggtg gcatggattt
      661 ttacgtgccc agacaagagc caatgttcag atggatgaga ttctcagatc tgaccacgtg
      721 ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca
      781 acccatctga tgggtccaca gccaacctcg tcccagaggt caacaatgag gttatggctt
      841 tggagcccgt agttggtgcc gccagtgcgg cgcctgtagc gggccaacaa aatgtaattg
      901 acccctggat tagaaacaat tttgtacaag cccctggtgg agagtttaca gaatccccta
      961 caaacgctcc aggtgaaata ttatggagcg cgcccttagg ccctgatctg aacccctacc
     1021 tttcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaatcc
     1081 tcgcggggaa cgcgttcacc gccgggaaaa tcatatttgc agcagttcca ccaaatttcc
     1141 caactgaagg tttgagcccc agccaggtca ctatgtttcc ccatataata gtagatgtta
     1201 ggcaattgga acctgtgttg atccccttac ccgatgttag gaataatttc taccattata
     1261 atcaatcaaa tgaccccacc atcaaattga tagcaatgtt gtacacacca cttagggcta
     1321 ataatgctgg ggatgatgtc ttcacagttt cttgtcgagt tctcacgaga ccatcccccg
     1381 attttgattt catatttttg gtgccagcca cagttgaatc aagaactaaa ccattctctg
     1441 tcccagtttt aactgttgag gagatgacca attcaaggtt ccccattcct ttggaaaagt
     1501 tgttcacggg ccccagtagt gcctttgttg ttcaaccaca aaacggcagg tgcacgactg
     1561 atggcgtgct cctaggtact acccaactgt cccctgtcaa catctgcacc ttcagagggg
     1621 atgtcaccca tattccaggt agtcgtaact acacaatgaa tttggcctcc caaaattgga
     1681 acagttacga tccaacagaa gaaatcccag cccctgtagg aactccagat ttcgtgggga
     1741 agattcaagg tgtgctcacc caaaccacaa ggacaaatgg ctcgacccgc ggccacaaag
     1801 ctacagtgta cactgggagc gccgactttt ctccaaaact gggtagagtt caatttgcca
     1861 ctgacacaga caatgatttt gaaactaacc aaaacacaaa gttcacccca gtcggtgtta
     1921 tccaggatgg tagtaccacc ccccgaaatg aaccccaaca atgggtgctc ccaagttact
     1981 caggcagaaa cattcataat gtgcacctgg cccccgctgt agcccccact ttcccgggcg
     2041 aacaactcct cttcttcaga tctactatgc ccggatgcag cgggtacccc aacatggatt
     2101 tggactgtct gctcccccag gaatgggtgc agtacttcta ccaggaggca gccccagcac
     2161 aatctgatgt ggctctgtta agatttgtga atccagacac aggtagggtt ttgtttgagt
     2221 gtaagcttca taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta
     2281 tcccccccaa tggttatttt agatttgatt cctgggtcaa ccagttctac acacttgccc
     2341 ctatgggaaa tgggacgggg cgtagacgtg cattataatg gctggagctt tctttgctgg
     2401 attggcatct gacgtccttg gctctggact tggttcccta atcaatgctg gggctggggc
     2461 catcaaccaa aaagttgaat ttgaaaataa cagaaaattg caacaagctt ccttccaatt
     2521 tagtagcaat ctacaacaag cttccttcca acatgacaaa gagatgctcc aagcacaaat
     2581 tgaggccacc aaaaagctgc aacaggaaat gatgagagtt aaacaagcaa tgcttctaga
     2641 gggtggattc tctgagacag atgcagcccg tggggcaatc aacgccccca tgacaaaaac
     2701 tttggactgg agcgggacaa ggtactgggc tcccgatgct aggactacaa catataatgc
     2761 aggccgcttt tccacccctc aaccctcggg ggcaccacca ggaagagcta atcttagggc
     2821 tactgtcccc gccaggggct cctccagcac gtcttctaac tcttctattg ctacttctgt
     2881 gtattcaaat caaaccacct caacgagact tggttctaca gctggttctg gtaccagtgt
     2941 ctcgagcctc ccgtcaactg caaggactag gagctgggtt gaggatcaaa ataggaattt
     3001 gtcacctttt atgagggggg cccacaacat ctcgtttgtc acccccccat ttagcagatc
     3061 ctctagccaa ggcacagtct caaccgtgcc caaagaagtt ttggactcct ggactggcgc
     3121 tttcaacacg cgcaggcagc ctctcttcgc tcacattcgc aagcgagggg agtcacgggt
     3181 gtaatgtgaa aagacaaaat tgattatctt tcttttcttc agtgtctttc
//