Typing tool
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Typing tool
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Complete norovirus genomes
| HM596590 | GII.5 | |
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|---|---|---|---|
| GII.P16 |
ORF1: 5..5101
ORF2: 5082..6704
ORF3: 6704..7480
LOCUS HM596590 7536 bp RNA linear VRL 22-APR-2019
DEFINITION Norovirus GII strain
Hu/GII.P16-GII.5/RUS/Novosibirsk/Nsk-N490/2010, complete genome.
ACCESSION HM596590
VERSION HM596590.4
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7536)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 7536)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 3 (bases 1 to 7536)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2010) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 4 (bases 1 to 7536)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Apr 22, 2019 this sequence version replaced HM596590.3.
FEATURES Location/Qualifiers
source 1..7536
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P16-GII.5/RUS/Novosibirsk/Nsk-N490/2010"
/isolate="Hu/GII/Nsk-N490/2010/RUS"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 8 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="31-May-2010"
/note="genotype: GII.P16/GII.5"
5'UTR 1..4
gene 5..5101
/gene="ORF1"
CDS 5..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AZL94858.1"
/translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPASRDNSQKPSRPPTPELVKKIPPPPPNGEKEEPVIRFEVKGGVSGLPELTTVPQP
EMTNTAFSVPPLSLRESREAKEPLTGAILEMWDGEIYHYGLYVEKGMVLGVHKPPAAI
SMAKVEMTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLSRRMVQRTTGFFRPYQEWNRKPLPTVDDSKIKKVANIFLCSLSTLFTRPIKDIIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGEYELQGPE
DIAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVE
KAKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
MEELKQAIKNVTIKRCQIIYNGSTFDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
RSARIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEEA
PKLENDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPNVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
QWNSITHWLLTLCAVSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLRE
YGLKPTRPDKTEGPLIISEDLDGLTFLRRTVARDPAGWFGKLDQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMALLGEASLHGPSFYNKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..997
/gene="ORF1"
/product="p48"
mat_peptide 998..2095
/gene="ORF1"
/product="NTPase"
mat_peptide 2096..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 5082..6704
/gene="ORF2"
CDS 5082..6704
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AZL94857.2"
/translation="MKMASNDAAPSNDGAAGLVPESNNEAMALEPVAGASLAAPVTGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLSRMYNGYAGG
MEVQVLLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPD
VRSTLFHFNQKDEPKMRLIAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP
TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTT
QLQACNICSLRGRITGQVPNEQHMWNLQITNLNGTQFDPTDDVPAPLGVPDFAGEVFG
VLSQRNRGEGNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN
EVSDGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID
CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV
VPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
gene 6704..7480
/gene="ORF3"
CDS 6704..7480
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QCD16861.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEYDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFSQPRKSATTPSSASSVSSGRTNSTNSTQS
TVVSASSVPPSRGSPASSTLSRATARTSNWVEEQNRNLEPYMKGALQTAFVTPPSSRA
SSNGSVSTVPKGVLDSWTPAFNTRRQPLFAYLRKKGESQA"
3'UTR 7481..7536
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgtcgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcgggcg aaggcctatt tacaaatatg tcttctaccc taaagaaagc
121 cctcggggct cggcccaaac agcctgcctc gagggacaac tcacaaaagc cctcaagacc
181 accaacgccc gagttggtca agaaaatacc ccctccccca cctaatggcg aaaaagaaga
241 accagtaatt aggtttgagg ttaagggtgg agtctctggc ttacccgaac tcacgacagt
301 cccccaaccg gaaatgacca atacggcatt cagtgtacca ccgttgagct tgagagagag
361 cagggaggcc aaggaaccac tgactggggc aatactggag atgtgggatg gagaaatata
421 ccactatggc ttgtatgtgg agaaaggcat ggtgttgggc gtgcacaaac cacctgcagc
481 tataagtatg gcaaaagtgg agatgacgcc gctgtcatta tactggcgtg tggtatatac
541 tccccagtac ctcatctccc ctgaaactct caagaggctc aacggagaag cattccctta
601 cactgctttt gacaacaact gttatgcctt ttgctgttgg gtattagacc ttaatgattc
661 atggctcagc agaaggatgg tgcagagaac aacaggtttc tttagaccct accaggagtg
721 gaacagaaag cccttaccca ctgtggatga ctctaaaatt aagaaggtgg caaacatatt
781 cttatgctca ttgtccacgc tgttcaccag gcctataaag gacatcatag ggaaaatcaa
841 accattaaac atcttgaaca tcctggcaac gtgtgactgg acgttcgccg ggattgtaga
901 gtctctgata ctacttgctg aactctttgg agttttctgg acacccccag atgtgtctgc
961 tatgatcgct cccttacttg gtgaatacga gttgcaaggg ccagaagaca tcgccgttga
1021 acttgtgcct gtagtaatgg gggggattgg tttggtgcta ggatttacca aagagaaaat
1081 tggcaaaatg ttgtcctctg cagcgtcaac gctcagggct tgcaaagatc ttggcgccta
1141 tggcttagag atactcaaat tggtcatgaa atggtttttc ccaaagaaag aagaggccaa
1201 tgagctagcc atggtgagag caatagagga tgctgtgctg gatcttgagg cgatagagaa
1261 caaccacatg acagctctgc tgaaagacaa agacagccta gcaacctaca tgaaaacact
1321 ggatttggag gaagaaaaag ccagaaggtt gtctacaaaa tctgcatccc ctgatatagt
1381 tgggacaatt aatgccctat tggcccgaat agcggcagct agatcactag tccacagggc
1441 caaagaggag ctgtctagca gaatcaggcc agttgttgtt atgatatctg gcaagccagg
1501 gataggcaag acccacctgg ccagggaggt ggctagaaag gtggcatcca ccctcactgg
1561 ggatcaaaga gtcggactca taccgaggaa tggtgtggac cattgggatg cgtacaaagg
1621 tgagagggtc gtgctgtggg atgactatgg catgagcaac cccatccatg atgccctgcg
1681 catacaggaa ctggccgaca cgtgtcccct taccttaaat tgtgatagaa ttgaaaataa
1741 gggaaaagtc tttgatagtg aagtcataat aatcacaaca aaccttgcca atccagctcc
1801 ccttgattat gtcaactttg aggcctgctc caggagaatt gattttctgg tgtatgccga
1861 cgcaccagaa gtagaaaagg caaaacgaga cttccctggc caaccagaca tgtggaaaga
1921 cgccttcaaa gcggactttt cgcatatcaa gttacaactt gcgcctcagg gcggctttga
1981 taagaatggc aataccccac atgggaaggg tgtgatgaag accctcacta ccggttctct
2041 gattgcccgt gcgtcaggcc tactgcatga gaggatggat gagtttgaac tccagggccc
2101 cacaatcacc actttcaatt tcgaccgaaa cagaatcacc gcctttagac aattggctgc
2161 agaaaacaaa tatgggttgg tggacaccat gagagttggc aaccaattga aaggggtgaa
2221 aaccatggaa gaactcaagc aagctatcaa gaatgtaacc atcaagaggt gccagattat
2281 ctacaatggt tccacgttcg accttgagtc tgatggcaag ggtaaagttt tggtggaaaa
2341 ggtcaaaaac acctctgtcc aaaccaacaa tgagctggcc ggagccctac atcacctcag
2401 aagtgctcga attaggtatt atgtcaagtg tgtgcaagaa gcaatctact ccatcctaca
2461 aattgccggc gctgcattcg ttaccacacg cattgcacgt cgcatgaaca tacaagagct
2521 ttggtcaaaa ccaccactag accaaagcga accggaggtt aaagaagagg cccccaagtt
2581 agaaaatgat gagttcatca tatcctccaa agacattaag gaggaaggaa agaagggcaa
2641 aaacaaaacc ggccgtggca agaaacacac tgcattttct agcaagggct taagcgatga
2701 ggagtatgat gagtacaaga ggataagaga agaaagaaat gggaaatact ctatagagga
2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggagga
2821 agatttctgc gaggaggaag aaattaaaat ccgccagagg atctttcgtc ccaccagaaa
2881 acaaaggaag gaagaaaggg ccacgctagg gctagtaact ggttcagaaa ttagaaagag
2941 aaaccctgat gacttcaaac ctaaagggaa actgtgggca gacgacaaca ggagtgttga
3001 ctacaacgaa aaattggact ttgaggcccc cccaagcata tggtctagga ttgtgagttt
3061 tggttctggt tggggctttt gggtgtcacc aagcctgttc ataacatcaa ctcatgtaat
3121 ccctgcgggc ataacagagg catttggagt ccccatcaaa caaatccaaa ttcacaagtc
3181 aggtgagttt tgccggttca ggttcccaaa accaattaga ccagatgtga caggaatgat
3241 cctggaagaa ggtgcgccag agggcaccgt ggcaaccgtg ctcattaaac gccccaccgg
3301 agaactcatg cccctcgcag ccagaatggg gacacacgca accatgaaaa ttcaggggcg
3361 catggttggc ggacaaatgg gtatgttgct cactggttca aatgctaagg gcatggattt
3421 ggggacaact cctggtgact gtgggtgccc gtacatctat aaaaggggca atgactatgt
3481 agtcattgga gtgcacacag cagctgcccg tggtggaaac actgtcatct gcgccacaca
3541 gggaagtgaa ggtgaggcga ctctcgaagg tggagacgat aaaggaacat actgtggggc
3601 acccatcctg ggtcctggag gggcaccaaa attgagcacc aagaccaaat tttggagatc
3661 atcaaacacg cctcttccac cagggacata cgagcccgct taccttggtg gtcgtgatcc
3721 acgtgtaaag ggtggaccct ctttacagca agtcatgaga gaccagttaa agcctttcac
3781 tgaacccagg ggtaaacccc caaagcccaa tgtgctggag gcagctaaac aaaccatcat
3841 caacgtcctc gagcaaactt tggatccccc acaaaagtgg acatacgcac aggcgtgcgc
3901 ttcacttgat aagaccacct ccagcgggta cccccatcac gtccgaaaga atgaattctg
3961 gaatggtgag accttcactg gcaagttggc agatcaagcg tcaaaagcga acttgatgtt
4021 tgaggaaggg aaacacatga cgccagtgta cacagcagcc ctcaaggatg agctggtcaa
4081 gactgacaaa atctatggaa agatcaagaa aagattgctc tggggttctg acttgtccac
4141 catgatccga tgtgccaggg cttttggtgg actcatggat gagatgaagg cacactgcat
4201 atcactccca gtccgagttg gtatgaacat gaatgaggat ggcccaataa tatttgagaa
4261 acattccaga tacaagtacc attatgatgc agactattcc cgctgggact cgacacaaca
4321 gagggctgtc ctagcagcgg ccttggaaat aatggtcaga ttctctgcag aaccacaact
4381 ggcgcaaaca gtcgctgaag acctgctggc ccccagtgtg gtggatgtag gagactttaa
4441 aatttcaata aacgaggggc tcccttctgg tgtgccatgc acttcccaat ggaactccat
4501 cacgcattgg ctactaactc tttgtgctgt gtctgaagtc accaacctgt cccctgacat
4561 cgtacaggca aattccatgt tctcattcta cggtgatgac gagattgtca gtaccgatat
4621 aaaattagac cctgaaaagt taactaccaa attgagggag tatggtttga aaccaacccg
4681 cccagataaa actgagggac ccctgatcat cagtgaggat ttggacgggc tcaccttcct
4741 ccggaggaca gttgcccgtg acccggctgg ctggtttgga aagttggatc aaagctcaat
4801 actgagacag atgtactgga ccagaggacc aaaccacgaa gatcccagtg aaacaatgat
4861 accccattct caaagaccca tacagctcat ggcactgctt ggcgaggcct ctcttcacgg
4921 accatctttc tacaacaaga ttagtaaatt ggtcataact gaactcaaag aaggtgggat
4981 ggatttttac gtgccaaggc aggaacctat gttcaggtgg atgaggtttt ctgacttgag
5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atctaatgat ggtgctgccg gcctcgtgcc agaaagtaac aatgaggcaa
5161 tggctcttga acccgtggcg ggagcgtctc tagccgcgcc tgtcactggt caaactaata
5221 taatagaccc ctggatcaga actaattttg tccaagcccc taatggtgaa tttacagttt
5281 cccctcgaaa ttcccctgga gaaatattgg tcaatttgga gctgggtcca gaattaaacc
5341 cttatctggc acatttatct aggatgtaca atggttatgc aggtggtatg gaggtgcaag
5401 tattgctcgc agggaacgcg ttcactgctg gtaagatcat cttcgctgcc gtgccacctt
5461 attttccagt tgaaaatctt agcccttctc aaataacaat gttcccacat gtgattattg
5521 atgttagaac cttggaacct gtgttactcc caatgcctga tgtcagaagt actttgtttc
5581 atttcaatca aaaggatgaa cctaaaatga ggcttattgc tatgctttac actcctctcc
5641 gctctaatgg ttctggtgat gatgttttca ccgtttcatg taggatcctt accagacctt
5701 cccctgaatt tgattttaca tatttagtgc caccaacagt agagtcaaag actaagcctt
5761 tcacactgcc tgtgctaaca ctgggagagc tgtccaactc cagatttccc ctctccattg
5821 atgagatggt caccagtcct aatgagtcca tagttgtcca gccacagaat ggcagagtca
5881 cgctggacgg tgagctgttg ggcacaactc aattgcaagc atgcaacatc tgctctttga
5941 gagggaggat cacagggcag gttcccaatg aacaacacat gtggaacctg cagatcacaa
6001 acctaaatgg tacacaattt gaccccacgg atgatgtccc agcccccctt ggtgtgcccg
6061 attttgcagg tgaggttttt ggtgtactta gtcagagaaa caggggtgag ggcaacccag
6121 caaacagggc tcacgatgca gtcgtggcca cttatagtga caagtacacc cccaaattgg
6181 gcttagtgca aattggaact tggaacacca atgatgttga aaatcagcca acaaaattca
6241 caccaattgg cctgaatgag gttagtgatg gccatcggtt cgaacagtgg accctgccta
6301 ggtactctgg tgccctaact ctaaatatga acttggctcc tgctgtagcc ccactctttc
6361 ctggagagcg ccttctcttc ttccgctctt atgtaccatt gaaaggtgga tttgggaacc
6421 ctgctataga ttgtctggtg cctcaagaat gggtccaaca cttctaccag gaatctgccc
6481 cctctctggg agacgtggcc ctagtcaggt atgtcaaccc agacaccggg cgtgtcctct
6541 ttgaggccaa actccacaag ggtgggttct taactgtgtc aagcaccagt acagggcctg
6601 ttgtggtgcc agccaatggt tatttcagat ttgattcttg ggttaatcaa ttttattctc
6661 tcgcccccat gggaactggg aatgggcgca gaagatttca ataatggcag gagcttttat
6721 agcaggttta gcaggtgatg tgcttagtaa tggcctcggt tcgttgatca atgccggagc
6781 caatgctatt aatcaaagag cagaatatga ttttaataga caattgcagc aaaattcttt
6841 taatcatgat aaagaaatgt tgaatgccca gatccaagca acaaaacaat tgcaggctga
6901 tatgatagca atcaaacaag gagtgctggc tgctgggggc ttttccccaa ctgacgcggc
6961 cagaggagct gtcaatgcac ccatgaccca agcactggat tggagcggca ctaggtactg
7021 ggcccctgga tcaatgaaga ccaccagcta ctctgggaag tttgtgtcca tgaaccctgt
7081 caggcaggtt gaattctcgc aacccagaaa gagtgcaact acaccatcaa gtgccagttc
7141 tgtgtcttcc ggtagaacta actcaacaaa ctccactcaa tcaactgttg tcagtgcttc
7201 ttcagtgcca ccttccagag gctcccctgc ttcctctact ttgtcaaggg ctacagctag
7261 aacatccaat tgggttgaag aacaaaatag gaatttggag ccctacatga agggtgccct
7321 ccaaacagca tttgtcactc ctccctccag cagagcatct agcaatggat cagtctcaac
7381 tgtaccaaaa ggtgttttgg actcctggac acctgcgttc aacacccgca ggcagccgct
7441 ttttgcttac cttcgcaaga agggggagtc acaagcttag tgaaaagata attagtggtt
7501 aataattgat cttttaaaaa aaaaaaaaaa aaaaaa
//