Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| HM590541 | GII.21 | |
|
|---|---|---|---|
| GII.P21 |
ORF1: 1..2070
ORF2: 2051..3670
ORF3: 3670..3855
LOCUS HM590541 3855 bp RNA linear VRL 16-JUL-2019
DEFINITION Norovirus GII isolate
Hu/GII.P21-GII.21/RUS/Novosibirsk/Nsk-1421/2006 polyprotein (ORF1)
gene, partial cds; major capsid protein VP1 (ORF2) gene, complete
cds; and minor capsid protein VP2 (ORF3) gene, partial cds.
ACCESSION HM590541
VERSION HM590541.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3855)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3855)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (27-JUN-2010) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 3855)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2016) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Jul 16, 2019 this sequence version replaced HM590541.2.
FEATURES Location/Qualifiers
source 1..3855
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P21-GII.21/RUS/Novosibirsk/Nsk-1421/2006"
/isolation_source="faeces"
/host="Homo sapiens; sex: F; age: 20 days"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk region"
/collection_date="20-Aug-2006"
/note="genotype: GII.P21/GII.21"
gene <1..2070
/gene="ORF1"
CDS <1..2070
/gene="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="ADP24637.3"
/translation="PSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVPIKQ
IQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMGTH
ATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAAR
GGNTVICATQGSEGEAMLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSTTPLPPG
TYEPAYLGGKDPRVKSGPSLQQVMRDQLKPFTEPRGKPPKPRVLEAAKKTIINVLEQT
IDPPQKWTYAQACASLDKTTSSGHPHHMRKNECWNGETFTGKLADQASKANLMYEEGK
NMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMEELKAHCVTL
PVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSAEPHL
AQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSP
DIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLIISEDLDG
LTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLG
EAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSF
VNEDGVE"
mat_peptide <1..540
/gene="ORF1"
/product="3C-like protease"
mat_peptide 541..2067
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 2051..3670
/gene="ORF2"
CDS 2051..3670
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="APF32452.2"
/translation="MKMASNDAAPSNDGATGLVPEINTETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRSNFVQAPNGEFTVSPRNSPGEILMNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVDMLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPAPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFTLPILTIGELTNSRFPAPIDQLYTSPNADVVVQPQNGRCTLDGELQGTT
QLLTTAICSYRGTTSNDTSDYWDDHLLHLVHPNGATYDPTEDVPAPFGTQDFRGILYG
MLTQNPRTSGDEAANSRGIYISSTSEKFTPKLGTIGLHQVQGDIASNQQSKFTPVGIA
VNGNTPFRQWELPNYSGALTLNTNLAPAVGPNFPGEQILFFRSSVPSVQGGQPIEIDC
LIPQEWISHFYQESAPSQSDVALVRYVNPDTGRTIFEAKLHRQGFITIAATGSNPVVV
PPNGYFRFDSWVNQFYALAPMGTGNGRRRVQ"
gene 3670..>3855
/gene="ORF3"
CDS 3670..>3855
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="QDM36895.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVTAGANAINQKVEYDFTKQLQSA
SFQHDKDMLQAQINATKQ"
ORIGIN
1 ccaagcattt ggtcacgaat agtcaacttt ggctcagggt ggggcttttg ggtctcgcct
61 agcctcttca taacatcaac ccatgtcatt ccccaaggcg cacaggagtt ctttggagtg
121 cccatcaaac agatacaaat tcataaatca ggtgagttct gccggcttag attcccaaaa
181 ccaatcagga cagatgtcac gggcatgatc ttagaggaag gtgctccaga aggtactgta
241 gctacacttc tcatcaagag accaactggg gaactcatgc ccttggcagc cagaatgggt
301 acacacgcga ccatgaaaat ccagggtcgc actgttggtg ggcagatggg catgctactc
361 acagggtcta acgccaagag catggatttg ggcacaaccc ctggcgattg tggctgtccc
421 tacatctaca agagggggaa cgattacgtg gtcatcggag ttcacaccgc cgctgctcgt
481 ggaggaaata ctgtcatctg tgcaacccaa ggaagcgagg gtgaagccat gctagagggt
541 ggcgataata agggaaccta ctgtggagca ccaatattag gccccggaaa tgcccccaaa
601 ctcagcacca aaaccaaatt ctggaggtct tccaccaccc ccctgccacc cggaacctat
661 gaaccagctt atctgggcgg caaggacccc agagtgaaaa gtggtccctc actgcaacag
721 gttatgaggg atcaactaaa accattcact gagcccagag gcaaaccacc caaacctaga
781 gtgctagaag ctgccaagaa gactataatc aatgtgcttg aacagacaat agacccacct
841 caaaaatgga catacgcaca ggcgtgtgca tcactagata agaccacttc cagcggccac
901 cctcaccaca tgcggaagaa cgagtgctgg aacggagaga ccttcacagg aaaactggca
961 gaccaagcat caaaggctaa cctaatgtat gaggaaggaa agaacatgac cccagtatac
1021 acaggagctt tgaaggacga gctagtcaag actgataaga tctatgggaa gatcaaaaag
1081 agactcctgt ggggttcaga cctatcaacc atgatacggt gtgcacgagc cttcggtggg
1141 ctgatggaag agctcaaggc ccattgcgtc acactaccag tcagggttgg catgaatatg
1201 aatgaggatg gacccataat atttgagaaa cattccagat acagatatca ttatgatgca
1261 gactactccc gctgggactc gacacagcaa agagcagtgc tggctgcagc cctggaaata
1321 atggtcaaat tttcagcaga accacatctg gcccaagtgg ttgcagaaga cctcttgtcc
1381 cccagtgtga tggatgtggg tgatttcaag atatcaatca atgaggggtt gccctctggt
1441 gtgccttgca cctcacaatg gaactccatt gcccactggc tcctcacact atgtgcactg
1501 tctgaagtca cagatctgtc ccctgacatc atccaggcaa actccctatt ctccttttat
1561 ggtgatgatg aaatagtgag cacagatatc aaattggacc cagagaaact gacagcaaag
1621 ttgaaggagt acgggctaaa accaacccgt cctgataaaa cagaaggacc cttaattatc
1681 tctgaagact tggacggcct gaccttctta cggagaacgg tgactcgcga tccggctggg
1741 tggtttggca aactggacca aagttcaata ctcagacaga tgtactggac taggggacca
1801 aaccatgagg acccctctga aacaatgata ccacactccc aaagacccat acaactgatg
1861 tcactactgg gtgaagctgc attacatggc ccatcattct atagcaaaat cagcaaattg
1921 gtcatctcag aattgaaaga gggtgggatg gatttttacg tgcccagaca agaaccaatg
1981 tttagatgga tgaggttctc agatttgagc acgtgggagg gcgatcgcaa tctggctccc
2041 agctttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctacagg
2101 tctcgtacca gagatcaaca ctgagacctt gcctctcgag cccgtggccg gagcggcaat
2161 tgctgcccct gttacgggcc aaaataatat aattgatccc tggattagaa gcaattttgt
2221 gcaggcgcct aatggtgagt ttacagtctc ccctagaaat tcccctggtg aaattttgat
2281 gaatttggag ttagggccag atcttaatcc atacttggct cacctttcaa gaatgtacaa
2341 tggttatgct ggaggtgtag aagtgcaagt gctcttagct gggaatgcgt tcacggcagg
2401 aaaaatcctt tttgcagcag tccccccaaa tttccccgtt gatatgctta gccctgctca
2461 aatcacaatg cttccccatt taattgtaga tgtcagaact ttggagccta ttatgatccc
2521 tctgcccgat gttaggaatg tgttctatca ctttaacaac cagcctgctc caagaatgag
2581 attggttgcc atgctctaca cccctttaag atccaatggg tccggtgatg atgtattcac
2641 tgtctcctgc agggtgctaa ccagacctac tccggacttt gagtttacat acttagtccc
2701 cccctcggta gagtccaaaa ccaagccttt caccctaccc atcctaacaa ttggagagtt
2761 gacaaattct agattcccag ccccgatcga tcagttgtac acttcaccca acgctgatgt
2821 agttgttcaa ccccaaaatg gccggtgcac actggacggt gagctacaag gtacaacaca
2881 acttttgaca acagcaatat gctcatacag gggcacaaca tcaaacgaca ctagtgacta
2941 ctgggatgat cacctcctgc acctggtcca ccccaatggg gcaacatatg acccgaccga
3001 ggacgtgcca gctccttttg gcacgcagga ctttcggggc attctgtatg ggatgttgac
3061 tcaaaacccc cgaacctccg gggacgaagc cgccaactcc cgtgggatct acatctcatc
3121 caccagtgaa aagttcactc caaaattggg tacaattggc ttgcaccaag tgcaaggcga
3181 catagccagc aaccaacagt caaaattcac gccagtaggg atagcagtga atggcaacac
3241 tcctttcaga cagtgggaac tcccaaacta ctctggtgct ctcaccctca acacaaacct
3301 tgcaccagcg gttgggccca acttccctgg ggagcaaatc cttttcttca ggtcaagtgt
3361 tccaagtgtt caaggtggcc aacctataga gattgattgc ctgatcccac aagaatggat
3421 ctcccatttc tatcaagaat cagccccttc tcagagtgat gtggccttgg tcaggtatgt
3481 caaccctgac acagggcgca caatctttga ggccaaattg cataggcagg gatttatcac
3541 catagcggcc actggaagca accccgtggt cgtgcctccc aatggatatt ttagatttga
3601 ttcctgggtc aaccagtttt atgcactcgc ccccatggga actgggaatg ggcgcagaag
3661 ggttcagtaa tggctggagc tttcatagca ggattggcag gtgacatgct caccaacact
3721 gttggttccc tggtcacagc gggggctaac gctataaacc aaaaagttga atatgacttc
3781 accaaacaac tgcaaagtgc ctccttccag catgacaagg acatgcttca agcccagatc
3841 aacgcaacaa aacaa
//