Typing tool
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Typing tool
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Complete norovirus genomes
| HM590538 | GII.3 | |
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| GII.P21 |
ORF1: 1..825
ORF2: 806..2452
ORF3: 2452..3193
LOCUS HM590538 3193 bp RNA linear VRL 25-APR-2018
DEFINITION Norovirus GII strain Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-1114/2006
RNA-dependent RNA polymerase (POL) gene, partial cds; major capsid
protein VP1 (VP1) gene, complete cds; and minor capsid protein VP2
(VP2) gene, partial cds.
ACCESSION HM590538
VERSION HM590538.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3193)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (27-JUN-2010) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
REFERENCE 4 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (25-APR-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Apr 25, 2018 this sequence version replaced HM590538.2.
FEATURES Location/Qualifiers
source 1..3193
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-1114/2006"
/isolate="Hu/GII.3/Nsk-1114/2006/RUS"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 7 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="14-May-2006"
/note="genotype: GII.P21/GII.3"
gene <1..825
/gene="POL"
CDS <1..825
/gene="POL"
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AUX14833.2"
/translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLL
SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEATDLSPDTIQANSLF
SFYGDDEIVSTDIKLDPEKLTTKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVT
RDPAGWFGKLDQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPSF
YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 806..2452
/gene="VP1"
CDS 806..2452
/gene="VP1"
/note="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AUX14834.2"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2452..>3193
/gene="VP2"
CDS 2452..>3193
/gene="VP2"
/note="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AWD31676.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVSAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRHWAPNATSTTSMSGGFTNQAVHRTTPDLKTNQTPKPTSNSGSSVRSNSTQITSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSN
TVSTVPKNVLDSWTSAFNTRRQPLFAHLR"
ORIGIN
1 tatcattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtactggct
61 gcagctctgg aaataatggt caaattctca tcagaacctc atctggccca agtagttgca
121 gaagacctct tgtcccccag tgtgatggat gtgggtgatt tcaagatatc aattaacgag
181 gggttaccct ctggtgtacc ttgcacctca caatggaact ccattgccca ctggctcctc
241 acactatgtg cattgtctga agccacagac ctgtcccctg acaccatcca ggcaaactcc
301 ctattctcct tttatggtga tgatgaaata gtgagcacag acatcaaatt ggacccagag
361 aagttgacaa caaaattgaa ggaatatggg ctaaaaccaa cccgtcctga taaaacagaa
421 ggacccttaa ttatctctga agatttggat ggcctgacct tcttacggag aacggtgacc
481 cgtgatccgg ctgggtggtt cggcaaactg gaccaaagtt caatactcag acagatgtac
541 tggaccaggg gaccaaacca tgaggacccc tctgaaacaa tgataccaca ctcccaaaga
601 cccatacaac tgatgtcact actgggtgaa gctgcattac atggtccatc attctacagt
661 aaaatcagca aattggtcat ctcagaattg aaagaaggtg gaatggattt ttacgtgccc
721 agacaagaac caatgtttag gtggatgcga ttctcagatt tgagcacgtg ggagggcgat
781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgcca ccccatctaa
841 tgatggtgcc gccggcctcg tcccagagat caacaatgag gcaatggcgc tagacccagt
901 ggcgggtgca gcgatagcag caccccttac tggtcagcaa aatataattg atccctggat
961 tatgaacaat tttgtgcaag cacctggtgg tgagtttaca gtatccccta ggaattcccc
1021 tggtgaagtg cttcttaatt tggaattagg cccagaaata aacccctatt tggctcatct
1081 tgctagaatg tataatggtt atgcaggtgg atttgaagtg caggtagtcc tggctggaaa
1141 tgcgtttaca gcaggaaaga taatctttgc agctataccc cctaattttc caattgataa
1201 tctgagcgca gcacagatca caatgtgccc gcatgtgatt gtggatgtca gacagttgga
1261 accggtcaac cttccgatgc ctgacgttcg caacaatttc tttcattaca atcaagggtc
1321 tgattcgaga ttgcgtttaa ttgcaatgct gtatacacct cttagggcaa acaattctgg
1381 ggatgatgtt tttactgtgt cttgtagagt gttgactagg cctagccctg acttttcatt
1441 taatttcctt gtgccaccca ctgtggagtc aaagacaaaa cccttcaccc tccctattct
1501 gactatctct gaaatgtcca attctaggtt tccagtgccg attgactctc tgcataccag
1561 cccaactgag aatattgttg tccagtgcca aaatgggcgc gtcactcttg atggtgagtt
1621 gatgggcacc acccaacttt taccgagtca aatctgtgct tttaggggcg tgctcaccag
1681 atcaacaagc agggccagtg atcaggccga tacagcaacc cctaggttat ttaattatta
1741 ttggcacata caattggata atctaaatgg aactccttat gatcctgcag aagacatacc
1801 aggcccccta gggacaccag acttccgggg caaagtcttt ggcgtggcca gccagaggaa
1861 ccccgacagc acaactagag cacatgaagc aaaggtggac acaacagctg gtcgtttcac
1921 cccaaaatta ggctcgttag agatatccac tgaatctggt gactttgatc aaaaccaacc
1981 aacaagattc accccagttg gcattggggt tgaccatgag gcagactttc aacaatggtc
2041 tttacccgac tattctggtc agttcaccca caacatgaac ttggccccag ctgtcgctcc
2101 caacttccct ggtgagcagc tccttttctt ccgctcacag ttaccatcct ctggtgggcg
2161 atccaacggg attctagact gcctggtccc ccaagaatgg gttcagcact tctaccaaga
2221 atcggccccc gcccaaacac aagtggccct ggttaggtat gttaaccctg acaccggcag
2281 agtgttattc gaggccaagt tacacaaatt aggctttatg accatagcta agaatggtga
2341 ttctccaata actgttcctc caaatggata ctttaggttt gaatcttggg tgaacccctt
2401 ttatacacta gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga
2461 gctttcatag caggattggc tggtgacata tttaccaata ctgtagggtc tctagttagt
2521 gcaggggcta atgctattaa tcagaaagtt gattttgaaa ataacaaata tttacaaaat
2581 gcatccttca atcatgataa ggagatgtta aatgcacaaa ttgaggcaac aaagaggtta
2641 caggctgaca tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccctact
2701 gatgcagccc gcggggcaat taatgccccc atgacaaaag tcctggattg gaatggaacg
2761 aggcactggg caccaaatgc cacctccaca acttcaatgt cgggtggctt tacaaatcag
2821 gctgtgcaca gaaccacgcc agatcttaaa acgaaccaga ctcccaaacc cacatccaac
2881 agtgggtctt cagtgaggtc aaattcaacc caaatcacta gcctgagctc acactcgtcc
2941 gggtcttctc gatccagcgg gtccacagta gttagctcat taccatcctc taacaggact
3001 agggactggg tcaaccaaca gaattttaat ttggaaccac acatgcctgg atctcttagg
3061 acagcttttg tcactccacc atctagcaca gcctctagtt caaacacggt ctcaaccgtg
3121 cccaaaaatg ttttggactc ctggacatct gcgttcaata cgcgcagaca gccgctattc
3181 gcacaccttc gca
//