Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| HM346627 | GII.11 | |
|
|---|---|---|---|
| GII.P11 |
ORF1: 1..784
ORF2: 768..2411
ORF3: 2411..3172
LOCUS HM346627 3240 bp RNA linear VRL 25-JUL-2016
DEFINITION Norovirus pig/DO35/2007/KOR RNA-dependent RNA polymerase gene,
partial cds; and VP1 protein and VP2 protein genes, complete cds.
ACCESSION HM346627
VERSION HM346627.1
KEYWORDS .
SOURCE Norovirus pig/DO35/2007/KOR
ORGANISM Norovirus pig/DO35/2007/KOR
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3240)
AUTHORS Song,Y.J., Yu,J.N., Nam,H.M., Bak,H.R., Lee,J.B., Park,S.Y.,
Song,C.S., Seo,K.H. and Choi,I.S.
TITLE Identification of genetic diversity of porcine Norovirus and
Sapovirus in Korea
JOURNAL Virus Genes 42 (3), 394-401 (2011)
PUBMED 21369826
REFERENCE 2 (bases 1 to 3240)
AUTHORS Choi,I.-S., Song,Y.-J., Lee,J.-B., Park,S.-Y. and Song,C.-S.
TITLE Direct Submission
JOURNAL Submitted (24-MAY-2010) Infectious Diseases, Konkuk University,
College of Veterinary Medicine, 1 Hwayang-dong, Gwangjin-gu, Seoul
143701, South Korea
FEATURES Location/Qualifiers
source 1..3240
/organism="Norovirus pig/DO35/2007/KOR"
/mol_type="genomic RNA"
/isolate="pig/DO35/2007/KOR"
/host="porcine"
/db_xref="taxon:889012"
/geo_loc_name="South Korea"
/collection_date="2007"
CDS <1..784
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ADN84675.1"
/translation="QQRGILAAALDIMVKFSAEPELAQVVAEDLLAPSVLDVGDFRIS
IVEGLPSGVPCTSQWNSFAHWLITLCAMSEVTGLSPDVIQAHSCFSFYGDDEIVSTDI
TLDPNMLTEKLKEYGLKPTRPDKTEGPLVIQKNLSWLTFLRRTIVRDPAGWFGKLDKD
SILRQLYWTRGPNHEDPMETMVPHSQRAIQLMALLGEASLHGSNFYGKVSRMVISEIK
EGGLEFYVPRHEAMFRWMRFSDLSTWEGDRNLAPSGVNEDGV"
CDS 768..2411
/codon_start=1
/product="VP1 protein"
/protein_id="ADN84676.1"
/translation="MKMASSDAAPSTDGSAGLVPEVNNETMALEPVVGAPLAAPVAGQ
HNIIDPWIKMNFVQAPNGEFTVSPRNAPGEILLDLELGPDLNPYLSHLARMYNGYAGG
MEVQVVLAGNAFTAGKIIFAAVPPNFPAENLSAAQVTMCPHVIVDVRQLEPVMLPMPD
IRNKLFHYNQVDDPKLRLLAYLYTPLRANNAGDDVFTVSCRVLTRPTPDFEFMFLVPP
TVESKTKPFSLPNLTLDELSNSRFPAPIVQLYTNPHDNLVVQPQNGRCTIDGLLQGTT
QLVSCNVCSFRGTMGEGQPASHSEDEIMPMAINVQREIMLENLDGSPYDPTDDIPAVL
GSPDFQGVMFGILSQRNTDGQTRAHEAKVDTRAARFAPKLGFVVATVESTDFHANQPS
RFTPVGLGGDANRDFNQWQLPAYGGALTNNTNLAPPVMPVYPGEQLLFFRSQLPSSGG
VVAGWLDCLLPQEWVQHFFQESATSQSNVALVRYVNPTTGRVLFEAKLHKQGFLTVAA
SGSYPLVVPADGYFRFESWVNEFYTLAPMGNGSGRRRAR"
CDS 2411..3172
/codon_start=1
/product="VP2 protein"
/protein_id="ADN84677.1"
/translation="MAGQILLGLATDLIGGGIGSLISAGANAINQKVEYDFNKKLQSF
SFAHDKEMLQAQVDATKQLQQDLIQLKQDTLLSAGYLPADAARGSLGVPMTKALDWNG
TRYWAPNSMGTSSYSGRFSRPASNLAFQSPQPPRQPPKAPTPTSGSTTASSASSASTA
STRLPSSSASSSGSSRSSTTTDRTREWVNSQNLGPYMDGALQTAFVTPPSSRSSSVGT
ASTVPDFVLDSWTPSFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 ccaacagagg ggcatcttgg ctgccgcgtt agacatcatg gtgaagtttt ctgctgaacc
61 cgagctggct caggtggtgg cggaggacct cctcgccccg agtgttcttg atgtcggcga
121 tttccgtatc tccattgtgg agggcctccc ctccggagtt ccgtgtacat cgcaatggaa
181 ttcctttgcc cactggctga taactctctg tgccatgtcg gaggtgacgg gtctttcacc
241 cgacgtgatc caggctcatt cctgcttttc cttctatggc gacgatgaaa tcgtgagcac
301 agacatcact ttagacccca acatgctcac agagaaattg aaagagtatg gcctgaagcc
361 aactaggcca gacaagactg aaggacccct agtgattcaa aagaacctgt cttggttgac
421 ttttctgaga aggacgatag tccgcgatcc ggctgggtgg ttcggtaagc ttgacaagga
481 ttccatcttg aggcagcttt attggaccag aggaccaaat catgaagacc ctatggaaac
541 tatggtgccc cactcacaaa gagcaataca attgatggcc ctgttgggag aggcctcact
601 gcatggttcc aacttctatg gtaaggtaag taggatggtg ataagtgaga tcaaggaggg
661 tggtctggag ttttacgtgc ccagacatga agccatgttc cgctggatgc ggttttcaga
721 cctcagcacg tgggagggcg atcgcaatct ggctcccagt ggtgtgaatg aagatggcgt
781 ctagtgacgc agctccatct acggatggat ccgccggtct cgtaccagag gtcaacaatg
841 agaccatggc cctagaacca gtggtgggtg ctccccttgc tgcccccgtt gctggtcaac
901 ataacattat agacccctgg attaaaatga attttgtgca ggcacctaat ggagaattta
961 ctgtttcccc ccgtaatgcc ccaggtgaga ttttattaga tttagaactt ggccctgatc
1021 ttaatcccta cctttcacat ttggcccgta tgtataatgg ctatgcaggt ggtatggagg
1081 tacaagttgt gctggctggg aatgccttta ctgctgggaa gatcattttt gctgctgttc
1141 caccaaattt tccagcagag aaccttagcg cggcacaagt caccatgtgc cctcatgtga
1201 tagttgatgt gagacaactg gaaccagtta tgctccccat gcctgatatt cggaataaac
1261 tatttcacta caatcaagtt gatgacccaa agctcagatt gttggcctac ctttatacac
1321 ctctccgggc taacaatgct ggggatgatg ttttcacagt ttcttgtcgg gttcttacta
1381 gaccaacccc agactttgag tttatgtttt tggttcctcc cactgttgaa tccaaaacca
1441 aacctttttc tttgcccaac cttactcttg atgaactttc taattctagg tttcccgcgc
1501 ctatagttca gctttacaca aaccctcatg ataacttggt tgtgcagcct cagaacggaa
1561 gatgtactat agatggtctt ttgcagggca ccacacaact tgtgtcctgt aatgtctgta
1621 gttttagggg caccatgggt gagggacaac cagcaagcca tagtgaggat gagatcatgc
1681 ccatggccat caatgtccag cgtgagatca tgctggagaa ccttgatggc tcgccttatg
1741 acccaactga tgacatcccg gcagtcttgg gttctcctga cttccagggg gtcatgtttg
1801 gcattctcag tcaaaggaac actgacgggc aaactagggc acatgaggcc aaggtggaca
1861 ctagggcggc tcgttttgcc cctaaacttg gctttgttgt ggccactgtg gagagcacgg
1921 atttccacgc caaccaaccc agcaggttta ctcccgttgg gctgggtggg gatgccaacc
1981 gggactttaa ccagtggcag ttaccagctt acggcggcgc gttgacaaac aacaccaacc
2041 tcgccccgcc cgtgatgcct gtttacccag gggagcagct tctctttttc cgctcccagc
2101 ttccgagctc tggtggtgtg gttgccgggt ggctggattg cctgctcccc caggagtggg
2161 ttcaacactt cttccaggag tcggcaacct cccaaagcaa tgtggccctg gttaggtatg
2221 tgaaccccac tacgggtaga gtgctctttg aagcaaagtt acacaaacaa ggctttctca
2281 ccgtggccgc ctcaggctct tatcccctgg ttgttcctgc tgatggttac tttagatttg
2341 aatcttgggt gaatgaattt tacaccttgg cccccatggg aaatggcagt gggcgcagac
2401 gtgctcgtta atggctggac agatcttact aggtttggct acggacctta ttgggggtgg
2461 gataggatct ttgatcagtg ctggtgctaa tgcaattaat caaaaagttg agtatgattt
2521 taataagaag ttacaatctt tctcctttgc tcatgataag gaaatgctgc aagcacaggt
2581 tgatgcaact aaacagctgc aacaggattt gattcagttg aaacaagata ctcttctttc
2641 tgctggttac ctccccgctg atgcggctag gggctctctc ggtgtaccta tgaccaaggc
2701 cctggactgg aatggcacga ggtattgggc tcccaactcc atgggcacct ctagttactc
2761 agggcggttc tcccgccccg cttcaaacct ggcctttcag agcccacagc ctcctcgcca
2821 gccacccaag gctccaactc ccacctcagg atccacaact gcctcttcag cctcgtcagc
2881 ttcaaccgcg tcgacaaggc tgcctagttc ctctgcatct tcatcggggt cgtcgagatc
2941 ctcaactacc acagatagga ctagggagtg ggtaaattca cagaacttag gcccctacat
3001 ggatggcgct ctgcagacgg cattcgttac acctccgtct agcaggagtt ccagtgtcgg
3061 cacagcctcg accgtgccag actttgtttt ggactcatgg accccttcct ttaacacaag
3121 aaggcaaccg ctttttgcgc atctgcgtag gcggggagag tcacaagctt aatagcctag
3181 tgaaagatag ggtttctttt cttttcctct tttgttccct gatctttaaa aaaaaaaaaa
//