Typing tool
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Typing tool
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Complete norovirus genomes
| HF952129 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..5093
ORF2: 5074..6696
ORF3: 6696..7502
LOCUS HF952129 7548 bp RNA linear VRL 18-JUN-2013
DEFINITION Norovirus Hu/GII.4/C00007916/2011/UK complete genome.
ACCESSION HF952129
VERSION HF952129.1
KEYWORDS complete genome.
SOURCE Norovirus Hu/GII.4/C00007916/2011/UK
ORGANISM Norovirus Hu/GII.4/C00007916/2011/UK
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1
AUTHORS Batty,E.M., Wong,T.H., Trebes,A., Argoud,K., Attar,M., Buck,D.,
Ip,C.L., Golubchik,T., Cule,M., Bowden,R., Manganis,C.,
Klenerman,P., Barnes,E., Walker,A.S., Wyllie,D.H., Wilson,D.J.,
Dingle,K.E., Peto,T.E., Crook,D.W. and Piazza,P.
TITLE A Modified RNA-Seq Approach for Whole Genome Sequencing of RNA
Viruses from Faecal and Blood Samples
JOURNAL PLoS ONE 8 (6), E66129 (2013)
PUBMED 23762474
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7548)
AUTHORS Batty,E.
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2013) Statistics, University of Oxford, 1 South
Parks Road, Oxford, OX1 3TG, UNITED KINGDOM
FEATURES Location/Qualifiers
source 1..7548
/organism="Norovirus Hu/GII.4/C00007916/2011/UK"
/mol_type="genomic RNA"
/strain="Hu/GII.4/C00007916/2011/UK"
/db_xref="taxon:1331842"
gene <1..5093
/gene="non-structural polyprotein"
CDS <1..5093
/gene="non-structural polyprotein"
/inference="similar to RNA sequence (same
species):GQ845367.2"
/codon_start=3
/product="ORF1"
/protein_id="CCX28633.1"
/translation="ASNDASAAAVANSNNDIAKSSSDGVLSSMAVTFKRALGARPKQP
PPREKPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPEESN
TAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAK
VELAPLSLYWRPVYTPQYLISPDTLKKLSGETFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKIKKVANIFLCALSSLFTRPIKDIIGKIRP
LNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSA
SPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREVAKK
IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKNAFSSDFSHIRLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGKQLKDVRTMPEL
KQALKNVSIKKCQIVYSGCTYILESDGKGNVKVDRIQSAAVQINNELAGALHHLRSAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSNPQVENTEETTSKDGCPKP
KDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGS
EIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVV
TLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGS
APTLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGK
PPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPYHVRKNDCWNGE
SFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLATM
IRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQ
QRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYG
LKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHG
DPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5074..6696
/gene="VP1"
CDS 5074..6696
/gene="VP1"
/inference="similar to RNA sequence (same
species):GQ845367.2"
/codon_start=1
/product="major capsid protein"
/protein_id="CCX28634.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSHNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6696..7502
/gene="VP2"
CDS 6696..7502
/gene="VP2"
/inference="similar to RNA sequence (same
species):GQ845367.2"
/codon_start=1
/product="minor capsid protein"
/protein_id="CCX28635.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAVN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTSS
NSSIATSVHSNQTTSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
3'UTR 7503..7548
ORIGIN
1 tggcgtctaa cgacgcttcc gctgccgctg ttgctaacag caacaacgac atcgcaaaat
61 cttcaagtga cggagtgctt tctagcatgg ctgtcacttt taaacgagcc ctcggggcgc
121 ggcctaaaca gcctcccccg agggaaaaac cacaaagacc cccacgacca cccactccag
181 aactggtcaa aaacattccc cctcccccac ccaacggaga ggatgaaata gtggtctctt
241 atagtgtcaa ggatggtgta tccggcttgc ctgacctttc caccgtcagg caaccggaag
301 aatctaacac ggccttcagt gtccccccac tcaatcagag ggagaataga gatgctaagg
361 agccacttac tggaacaatt ctggaaatgt gggacgggga aatctaccat tatggcctgt
421 atgtggagcg aggtcttgta ctaggtgtgc acaaaccacc agctgccatc agcctcgcta
481 aggttgagct agcaccactc tccttgtact ggagacctgt gtacactcct cagtacctca
541 tctctccaga cactctcaag aaattgtccg gagaaacgtt cccctacaca gcctttgaca
601 acaactgtta tgccttttgt tgctgggtcc tggacctaaa cgactcgtgg ctgagcagga
661 gaatgatcca gagaacaact ggtttcttca gaccctatca agactggaat aggaaacccc
721 ttcccactat ggatgactcc aaaataaaga aggtagctaa catattcctg tgtgctctgt
781 cctcgctgtt caccagaccc ataaaagata taatagggaa gataaggcct cttaacatcc
841 tcaacatctt agcctcatgt gactggactt ttgcaggcat agtggagtcc ctgatactct
901 tggcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg attgccccct
961 tacttggtga ctacgagcta caaggacctg aggaccttgc agtggagctc gtccccgtag
1021 tgatgggggg aattggtttg gtgctaggat tcaccaaaga gaagattggg aaaatgttgt
1081 catctgctgc gtccaccttg agagcttgta aagaccttgg tgcatatggg ctagagatcc
1141 tgaagctggt catgaagtgg ttcttcccga agaaggagga ggcaaatgag ctggctatgg
1201 tgaggtctat cgaggatgca gtcctagatc tcgaggcaat cgaaaacaac catatgacca
1261 ccttgctcaa agacaaagac agtctggcaa cctatatgag aacacttgac cttgaggagg
1321 agaaagccag gaaactctca accaagtctg cctcacccga catcgtgggc acaatcaacg
1381 ccctcctggc gagaatcgct gccgcacgtt ctctggtgca tcgagcgaag gaggagcttt
1441 ccagcagacc aagacctgtg gtgttgatga tatcaggcag gccaggaata gggaagaccc
1501 acctcgctag ggaagtggct aagaaaatcg cagcctccct tacaggagac cagcgtgtgg
1561 gcctcatccc acgcaatggc gtcgaccatt gggatgcgta caagggggag agggtcgtcc
1621 tatgggacga ttatggaatg agcaacccta ttcacgatgc cctcaggctg caagaactcg
1681 ctgacacttg cccccttact ctaaactgtg acaggattga aaataaagga aaggtctttg
1741 acagcgatgt catcattatc accactaatc tggccaaccc agcaccactg gactatgtca
1801 actttgaagc atgctcgagg cgcatcgact tcctcgtgta tgcagaagcc cctgaagtcg
1861 aaaaggcgaa gcgtgacttc ccaggccagc ctgacatgtg gaagaacgct ttcagttctg
1921 atttctcaca cataaggcta gcactggccc cacagggtgg tttcgacaag aacgggaaca
1981 ccccgcacgg aaagggcgtc atgaagactc tcaccactgg ctcccttatt gcccgggcat
2041 cagggctact ccatgagagg ttagatgaat ttgaactaca gggcccagct ctcaccacct
2101 tcaatttcga tcgcaataaa gtgcttgcct tcagacagct tgctgctgaa aataaatatg
2161 gattgatgga cacaatgagg gttgggaaac agctcaagga tgtcagaacc atgccagaac
2221 tcaaacaagc actcaagaat gtctcaatca agaagtgcca aatagtgtat agtggttgca
2281 cctacatact tgagtctgat ggcaagggca atgtgaaagt tgacagaatc caaagcgccg
2341 ccgtgcagat caacaatgag ctggctggtg ccctgcacca tctgaggagc gccagaatca
2401 gatactatgt caagtgtgtc caggaggccc tgtattccat cattcaaatt gctggggctg
2461 catttgtcac cacgcgcatt gccaagcgca tgaacataca aaacctatgg tccaatccac
2521 aagtggaaaa cacagaggag actaccagca aggacgggtg cccaaaacct aaggatgatg
2581 aggagtttgt catttcatcc gacgacatca aaactgaggg taagaaagga aagaacaaga
2641 ctggccgcgg caagaagcac acagcatttt caagcaaagg cctcagtgat gaagagtacg
2701 atgagtacaa gaggattaga gaagaaagga atggcaagta ctccatagaa gagtaccttc
2761 aggacaggga caaatactat gaggaggtgg ccattgccag ggcgactgag gaagacttct
2821 gtgaagagga ggaggccaag atccggcaaa ggatctttag gccaacaagg aaacaacgca
2881 aggaggaaag agcctctctc ggtctggtca caggctctga aattaggaaa agaaacccag
2941 atgacttcaa acccaagggg aaattgtggg ctgacgatga caggagtgtg gactacaatg
3001 agaaactcag ttttgaggcc ccaccgagca tctggtcgag aatagtcaac tttggttcag
3061 gctggggatt ctgggtctcc cccagtctgt tcataacatc aacccatgtc ataccccagg
3121 gcgcaaagga gttctttgga gtccccatca aacaaataca ggtacacaag tcaggcgagt
3181 tctgtcgctt gagattccca aaaccaatca ggactgatgt gacaggcatg atcttggaag
3241 aaggcgcccc tgagggtacc gtggtcacac tactcatcaa aaggtccact ggggaactca
3301 tgcccctagc agctaggatg gggacccatg cgaccatgaa gatccaaggg cgcactgttg
3361 gaggccagat gggcatgctt ctgacaggat ccaacgccaa gagcatggac ctgggtacta
3421 caccaggtga ttgtggttgc ccctatatct acaagagagg caacgactat gtggtcattg
3481 gagtccacac ggctgccgca cgtgggggga acactgtcat atgtgccacc caggggagtg
3541 aaggagaggc tacacttgaa ggtggtgaca acaaggggac atactgtggt gcaccaatcc
3601 taggcccagg gagtgcccca actcttagca ccaagaccaa attctggaga tcgtctacag
3661 cgtcactccc acctggcacc tatgaaccag cctatcttgg tggcaaggac cctagagtca
3721 agggtggccc ttcactacag caagtcatga gggaacagtt gaagccattc acagagccaa
3781 ggggcaagcc accaaaacca agtgtattag aagctgccaa gaagaccatc atcaatgtcc
3841 ttgagcaaac aattgatcca cctgagaaat ggtcgttcgc acaagcttgc gcgtcccttg
3901 acaagaccac ttccagtggt catccgtacc acgtacggaa aaacgactgc tggaacgggg
3961 agtccttcac aggcaagctg gcagaccagg cttccaaggc caacctgatg tttgaagaag
4021 ggaagaacat gaccccagtc tacacagctg cgctcaagga tgagttagtt aaaactgaca
4081 aaatttatgg taagatcaag aagaggcttc tctggggttc ggacttggcg accatgatcc
4141 ggtgtgctcg agcattcgga ggcctaatgg atgaactcaa agcacactgt gtcacgcttc
4201 ccattagagt tggcatgaat atgaatgagg atggtcccat catcttcgag aggcattcca
4261 ggtacacata tcactatgat gctgattact ctcgatggga ttcaacacaa cagagagccg
4321 tgttggcagc agctctcgaa atcatggtta aattctcccc agaaccacat ttggctcagg
4381 tagtcgcgga agaccttctt tctcctagcg tggtggacgt gggcgacttc acaatatcaa
4441 tcaacgaggg tcttccctct ggggtgccct gcacttccca atggaactcc atcgcccact
4501 ggcttctcac tctctgtgcg ctctctgaag tcacaaacct atcccctgac accatacagg
4561 ctaactccct cttctctttt tatggtgatg atgaaattgt tagcacagac ataaaattgg
4621 acccagagaa attgacagca aagctcagag aatatgggtt aaaaccaacc cgccctgaca
4681 aaactgaagg accccttgtc atctctgaag acctgaacgg cctaactttc ctgcggagaa
4741 ctgtgacccg cgacccagct ggttggtttg gaaaactgga gcagagttca atactcaggc
4801 aaatgtactg gactaggggt cccaaccatg gagacccatc tgaaacaatg attcctcact
4861 cccaaagacc catacaattg atgtccctac tgggggaggc cgctctccac ggcccagcct
4921 tttatagcaa aatcagcaag ttggtcattg cagagctgaa agaaggtggc atggattttt
4981 acgtgcccag acaggagcca atgttcagat ggatgagatt ctcagatctg agcacgtggg
5041 agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag tgacgccaac
5101 ccatctgatg ggtccacagc caacctcgtc ccagaggtca acaatgaggt tatggctttg
5161 gagcccgtag ttggtgccgc cattgcggca cctgtagcgg gccaacaaaa tgtaattgac
5221 ccctggatta gaaacaattt tgtacaagcc cctggtggag agtttacagt atcccccaga
5281 aacgctccag gtgaaatatt atggagcgcg cccttaggcc ctgatctgaa tccctacctt
5341 tcccatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaatcctc
5401 gcggggaacg cgttcaccgc cgggaaaatc atatttgcag cagtcccacc aaatttccca
5461 actgaaggtt tgagccccag tcaggtcact atgtttcccc atataatagt agatgttagg
5521 caattggaac ctgtgttgat tcccttaccc gatgttagga ataatttcta ccattataat
5581 caatcaaatg accccaccat caaattgata gcaatgttgt atacaccact tagggctaat
5641 aatgctgggg acgatgtctt cacagtttct tgtcgagttc tcacgagacc atcccccgat
5701 tttgatttca tattcttggt gccacccaca gttgaatcaa gaactaaacc attctctgtc
5761 ccaattttaa ctgttgagga gatgaccaat tcaaggttcc ccattccttt ggaaaagttg
5821 ttcacgggcc ccagtagtgc ctttgttgtt caaccacaaa atggcaggtg cacgactgat
5881 ggcgtgctcc taggtactac ccaactgtcc cctgtcaaca tctgcacctt cagaggggat
5941 gtcacccata ttccaggcag tcataactac acaatgaatt tggcctccca aaattggaac
6001 agttacgatc caacagaaga aatcccagcc cctctaggaa ccccagattt cgtggggaag
6061 attcaaggtg tgctcaccca aaccacaagg acaaatggct cgacccgcgg ccacaaagct
6121 acagtgtaca ctgggagcgc cgacttttct ccaaaactgg gtagagttca atttgccact
6181 gacacagaca atgattttga aactaaccag aacacaaagt tcaccccagt cggtgttatc
6241 caggatggta gtaccacccc ccgaaatgaa ccccaacaat gggtgctccc aagttactca
6301 ggcagaaaca ttcataatgt gcacctggcc cccgctgtag cccccacttt cccgggcgag
6361 cagctcctct tcttcagatc tactatgccc ggatgcagcg ggtaccccaa catggatttg
6421 gactgtctgc tcccccagga atgggtgcag tacttctacc aggaggcagc cccagcacaa
6481 tctgatgtgg ctctgttaag atttgtgaat ccagacacag gtagggtttt gtttgagtgt
6541 aagcttcata aatcaggcta tgttacagtg gcacacactg gccaacatga tttggttatc
6601 ccccccaatg gttattttag atttgattcc tgggtcaacc agttctacac acttgcccct
6661 atgggaaatg ggacggggcg tagacgtgca ttataatggc tggagctttc tttgctggat
6721 tggcatctga cgtccttggc tctggacttg gttccctaat caatgctggg gctggggcca
6781 tcaaccaaaa agttgaattt gaaaataaca gaaaattgca acaagcctcc ttccaattta
6841 gtagcaatct acaacaagct tcctttcaac atgacaaaga gatgctccaa gcacaaattg
6901 aggccaccaa aaagttgcaa caggaaatga tgagagtcaa acaagcaatg ctcctagagg
6961 gtggattctc tgagacagat gcagcccgtg gggcagtcaa cgcccccatg acaaaaactt
7021 tggactggag cgggacaagg tactgggctc ccgatgctag gactacaaca tataatgcag
7081 gccgcttttc cacccctcaa ccctcggggg cactaccagg aagagctaat cttagggcta
7141 ctgtccccgc ccggggttcc tccagcacgt cttctaactc ttctattgct acttctgtgc
7201 attcaaatca aaccacctca acgagacttg gttctacagc tggttctggt accaatgtct
7261 cgagcctccc gtcaactgca aggactagga gctgggttga ggatcaaaat aggaatttgt
7321 cacctttcat gaggggggcc cacaacatct cgtttgtcac cccaccatct agcagatcct
7381 ctagccaagg cacagtctca accgtgccca aagaagtttt ggactcctgg actggcgctt
7441 tcaacacgcg caggcagcct ctcttcgctc acattcgcaa gcgaggggag tcacgggcgt
7501 aatgtgaaaa gacaaaattg attatctttc ttctctttag tgtctttt
//