Typing tool
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Typing tool
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Complete norovirus genomes
| GU991355 | GII.3 | |
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| GII.P12 |
ORF1: 5..5101
ORF2: 5082..6728
ORF3: 6728..7492
LOCUS GU991355 7544 bp RNA linear VRL 27-FEB-2012
DEFINITION Norovirus Hu/Shanghai/SH312/2009/CHN, complete genome.
ACCESSION GU991355
VERSION GU991355.1
KEYWORDS .
SOURCE Norovirus Hu/Shanghai/SH312/2009/CHN
ORGANISM Norovirus Hu/Shanghai/SH312/2009/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7544)
AUTHORS Shen,Q., Zhang,W., Yang,S., Chen,Y., Shan,T., Cui,L. and Hua,X.
TITLE Genomic organization and recombination analysis of human norovirus
identified from China
JOURNAL Mol. Biol. Rep. 39 (2), 1275-1281 (2012)
PUBMED 21611752
REFERENCE 2 (bases 1 to 7544)
AUTHORS Shen,Q., Zhang,W., Yang,S. and Chen,Y.
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2010) Shanghai JiaoTong University, School of
Agriculture and Biology, 800 Dongchuan Road, Shanghai 200240, China
FEATURES Location/Qualifiers
source 1..7544
/organism="Norovirus Hu/Shanghai/SH312/2009/CHN"
/mol_type="genomic RNA"
/isolate="Hu/Shanghai/SH312/2009/CHN"
/host="Homo sapiens"
/db_xref="taxon:756497"
/country="China"
/collection_date="Jan-2009"
CDS 5..5101
/note="contains nonstructural proteins, N-terminal,
NTPase, 3A-like protein, VPg, Protease, and RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="ADF47130.1"
/translation="MKMASNDASAAAAANSNNDNAKSSSDGVLSSMAVTFKRALGARH
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISAARIGKTHLARELA
KKIAASLTGDQRVGLIPRNGVDHWDAYKEERVVLWDDYGMRSSHHDALRLQELADTCP
LTLNCDRIENKGKVFGSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMP
ELKQALKNVAIKNCQIVYGGCTYRLESDGKGNVKVDRVQSTSVQTNNELAGALHHLRC
ARIRYYVKCVQEALYSIIQIAGAAFVTTRIIKRVNIQDLWSKPQVENTEEATDKDGCP
KPKDIEEFVISSDDIKTEGKKGKNKAGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT
GSEIRKRNPEDFKPKGKLWADDDRNVDYNEKLSFEAPPGIWSRIVNFGSGWGFWVSPS
LFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT
VVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGP
GSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMFEEGKSMTPVYTGALMDELVKTDKIYGKIKKRLLWGSDLA
TMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5082..6728
/codon_start=1
/product="VP1"
/protein_id="ADF47131.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFNQNQP
TRFTPVGIGVDHEEDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPTQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPTGTENGRRRVQ"
CDS 6728..7492
/codon_start=1
/product="VP2"
/protein_id="ADF47132.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAISAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTAPNFKTNQAPKSTPSSGSSVRSLSTQITSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTVSSSG
TVSTVPKKFWTPGQSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
61 caacgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcataaac agcctccccc gagggaaata ccacaaaggc ctccacggcc
181 acccacccca gaactggtca aaaagatccc tcctccccca cccaacgggg aggatgaact
241 agtggtctct tacagcgcca aagatggcgt ttctggtttg cctgagctta ccactgtctg
301 gcagccggat gaaaccaata cggcgttcag tgttccccca ctcaatcaga gggagaacag
361 ggacgccaag gagccgctga ccggaacaat cctggaaatg tgggacgggg agatctatca
421 ttacggtctg tatgtggagc gaggccttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgagc tagcaccact ctctctgttt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactctcag gagactgcat ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agagaacaac tggtttcttc agaccttacc aagactggaa
721 caggaaaccc ctccccacca tggatgactc caaattaaag aaggtagcca acatattctt
781 gtgtgcacta tcttcgctat tcactaggcc catcaaagac ataataggaa aggtgagacc
841 gctcaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatggggg ggattggttt ggtgttagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ctaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 cctcgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcagcag ccaggatagg
1501 gaaaactcac cttgccaggg agctagccaa gaaaatcgca gcttcgctta caggggacca
1561 gcgcgtgggt ctcatccctc gcaatggcgt tgatcactgg gatgcataca aggaagaaag
1621 agtcgtccta tgggacgatt atggaatgag gtcatcccat cacgacgccc tcaggttaca
1681 ggaacttgct gacacctgcc cccttacgct aaattgtgac aggattgaga acaaaggaaa
1741 ggtctttggc agtgatgcca taatcatcac cactaatctg gccaacccag caccattgga
1801 ctatgtcaac tttgaagcat gctcgaggcg catcgacttc ctcgtgtacg cagaagcccc
1861 tgaggtcgag aaagcaaagc gtgatttccc aggtcaacct gacatgtgga agaacgcatt
1921 tagttctgac ttctcgcaca taaaactggc gctggctccg caaggtggct tcgacaagaa
1981 cggaaacacc ccacacggga aaggcgttat gaaaaccctc accactggtt ccctcatcgc
2041 ccgagcgtca gggctactcc atgagaggtt agatgagtat gagctgcagg gcccaacccc
2101 caccaccttt aactttgacc gcaacaaggt gcttgcgttc agacagcttg ctgccgaaaa
2161 caagtacgga ttgttggaca caatgagagt tggaaaacag ctcaaggatg tcaagaccat
2221 gccagagctc aaacaagcac tcaaaaatgt cgcaatcaag aattgtcaga tagtgtatgg
2281 tggctgcact tataggcttg agtctgatgg caagggtaat gtgaaagttg acagagttca
2341 gagcacctcc gttcagacca acaatgagct ggctggcgcc ctgcaccatc taaggtgcgc
2401 cagaatcagg tactatgtca agtgtgttca ggaggccctg tattctatca tccagattgc
2461 tggggctgca tttgtcacca cgcgcatcat caagcgtgtg aacattcaag acttatggtc
2521 caagccacaa gtggaaaaca cagaggaggc taccgacaag gacgggtgcc caaaacccaa
2581 agatattgag gagttcgtca tttcatctga cgacattaaa actgagggta agaaagggaa
2641 gaacaaggct ggccgtggca agaagcacac agccttctca agtaaaggtc tcagtgatga
2701 agagtatgat gagtacaaga gaattagaga ggaaaggaat ggcaagtact ccatagaaga
2761 gtacctacag gacagggaca aatactatga ggaggtggcc attgccaggg cgaccgagga
2821 agacttctgt gaagaggagg aggccaagat ccggcaaagg atcttcaggc caacaaggaa
2881 acaacgcaag gaagaaagag cttctctcgg tttagtcaca ggttctgaaa ttaggaaaag
2941 gaacccagaa gacttcaagc ctaaggggaa actatgggcc gacgatgaca gaaatgtgga
3001 ctacaatgaa aaactcagct ttgaggcccc accaggcatc tggtcaagga tagtcaactt
3061 tggttcaggt tggggctttt gggtttcccc cagcctgttc ataacatcaa cccatgtcat
3121 accccagggc gcacaggagt tctttggtgt tcccatcaaa caaattcaga tacacaaatc
3181 gggtgaattc tgtcgcttga ggtttccaaa gccgatcaga actgacgtga caggcatgat
3241 cttagaagaa ggtgcacccg aagggaccgt ggtcacatta ctcatcaaga ggccaactgg
3301 agagctcatg cccctggcag ccagaatggg aacccacgca accatgaaga ttcaagggcg
3361 cactgttgga ggtcaaatgg gcatgctcct aacagggtcc aacgccaaga gtatggacct
3421 gggcaccaca ccaggtgact gtggctgccc ctacatttac aagaggggga atgactacgt
3481 agtcattgga gtccacacag ctgccgcccg tggaggaaac actgtcattt gtgccaccca
3541 ggggagcgag ggagaagcca cacttgaagg cggtgacagc aaggggacct actgtggtgc
3601 accaatctta ggtccaggaa gtgccccaaa gctcagcacc aagactaagt tctggaggtc
3661 atccacggca ccactcccac ctggtaccta tgagccagcc tacctcggcg gcaaggaccc
3721 cagagttaag ggtggccctt cattgcaaca agttatgagg gaccaactga aaccattcac
3781 tgagcctagg ggtaaaccac caagaccaag tgtgctagaa gccgccaaga aaaccatcgt
3841 caatgtcctt gaacagacaa ttgatccacc tcaaaaatgg tcgtttgcgc aggcatgcgc
3901 atcccttgac aagaccactt ccagcggtca cccgcaccat atgcggaaaa acgactgctg
3961 gaacggggaa tcctttacag gaaaattggc agaccaggct tccaaggcca acctgatgtt
4021 cgaggaggga aagagcatga ccccagttta cacgggtgcg cttatggacg agctggtcaa
4081 gactgacaag atttatggca agatcaaaaa gaggcttctc tggggttcgg acctggcgac
4141 catgattcgg tgcgcccgag cattcggagg cctgatggag gaactcaaag cacattgtgt
4201 cacactacct gtcagagtgg gtatgaatat gaatgaggat ggtcctatca tctttgagag
4261 acactccaga tataaatatc attatgatgc tgattactcc cggtgggact caacacaaca
4321 aagagccgtg ctagcagcag ccttggaaat catggtcaag ttctccccag agccgcacct
4381 ggcccaaaag gttgcagaag accttctttc tcccagcgtg atggacgtgg gtgatttcaa
4441 aatatcaatc aatgagggtc tcccctccgg agtgccctgc acctcccaat ggaattccat
4501 cgcccactgg ctcctcactc tctgtgcact ctccgaggtt acaaacctgt ctcctgacat
4561 cattcaggcc aactctctct tttctttcta cggtgatgat gaaattgtga gtacagacat
4621 aaaattggac ccagaaaaac tgacagcaaa actcaaggaa tacgggttga aaccgacccg
4681 ccctgacaag actgaagggc ctcttgtcat ctccgaagac ctgaatggcc tgaccttcct
4741 gcggaggacc gtgacccgcg acccagcagg ctggtttgga aagttggaac agagctcaat
4801 actcagacaa atgtactgga ctaggggccc caaccatgaa gatccatctg aaacaatgat
4861 accacactcc cagaggccca tacaattgat gtctttgctg ggtgaggcag cactccacgg
4921 cccagcattc tacagcaaaa tcagtaaact ggtcattgca gagttgaagg aaggtggcat
4981 ggatttttac gtgccaagac aagagccaat gttcagatgg atgagattct cggatctgag
5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atctaacgat ggtgccgccg gcctcgtccc agagatcaac aatgaggcaa
5161 tggcgctaga accagtggcg ggtgcagcga tagcagcacc cctcactggc cagcaaaata
5221 taattgatcc ctggattatg aataattttg tgcaagcacc tggtggtgag tttacagtgt
5281 ctcctaggaa ttcccctggt gaagtgcttc tcaatttgga attgggccca gaaataaatc
5341 cctatttggc ccatcttgct agaatgtata atggttatgc aggtgggttt gaagtgcagg
5401 tagtcctagc tggaaatgcg tttacagcag gaaagataat ttttgcagct atacccccta
5461 acttcccaat tgacaatcta agcgcagcac agatcacaat gtgcccacat gtgattgtgg
5521 atgtcagaca gttggaaccg gtcaaccttc cgatgcctga cgttcgcaat aacttcttcc
5581 attacaacca agggtctgat tcgagattgc gcttagttgc aatgctgtat acacctctta
5641 gggcaaataa ttctggggat gatgttttta ctgtgtcttg tagagtgctg actaggccta
5701 gccctgactt ttcatttaac ttccttgtgc cacccactgt ggagtcaaag acaaaaccct
5761 tcaccctccc tattttgact atctctgaaa tgtctaattc taggtttcca gtgccgattg
5821 attctctgca caccagccca actgagaata ttgttgtcca gtgccaaaat gggcgcgtca
5881 ctcttgatgg tgagttgatg ggcaccaccc aactcttacc tagtcaaatc tgtgctttta
5941 ggggcgtgct caccagatca acaagcaggg ccagtgacca ggccgacaca gcaaccccta
6001 gattgtttaa ttattattgg cacatacaat tggataatct aaatgggact ccttatgatc
6061 ctgcagaaga cataccaggc cccctgggga caccagactt ccggggcaaa gtctttggcg
6121 tggccagcca gagaaatccc gacagtacaa ctagagcaca tgaagcgaag gtggacacaa
6181 cagctggtcg ctttacccca aaactaggct cattggagat atccactgaa tctggtgact
6241 ttaatcaaaa ccaaccaaca agattcaccc cagttggcat tggggttgac cacgaggaag
6301 acttccaaca atggtcctta cccgactatt ctggtcagtt cactcacaac atgaacttag
6361 ccccagctgt tgctcccaac ttccctggtg agcagctcct tttcttccgc tcacagttac
6421 catcttctgg tgggcgatcc aatgggattc tagactgcct ggtcccccaa gaatgggttc
6481 agcacttcta ccaagaatcg gcccccaccc aaacccaggt ggccctggtt agatatgtca
6541 accctgacac tggtagagtg ttgtttgagg ccaagctgca caaattaggt ttcatgacta
6601 tagctaagaa tggtgactct ccaataactg tccccccaaa tggatacttt aggtttgaat
6661 cttgggtgaa cccattttat acacttgccc ccacgggaac tgagaatggg cgtagaaggg
6721 ttcaataatg gctggagctt ttatagcagg attagctggt gatatattca caaatactgt
6781 aggatctcta gttaatgcag gggctaatgc cattaatcaa aaagttgatt ttgaaaataa
6841 caaatatttg caaaatgctt cctttaatca tgataaagaa atgttaaatg cacaaattga
6901 ggcaacaaag aggttacagg ctgacatgat tgctatcaaa cagggggttt tgaccgctgg
6961 cggcttttcc cccactgatg cagctcgcgg ggcaattagt gcccccatga caaaagtcct
7021 agattggaat ggaacgaggt actgggcacc aaatgccacc tctacaacct cgatgtcggg
7081 tggcttcaca aaccaggctg tgcacagaac cgcgccaaat tttaaaacga accaggcccc
7141 caaatccaca cccagcagtg ggtcttcagt gaggtcactc tcaacccaaa tcactagtct
7201 gagctcacac tcgtccgggt cgtctcgatc cagcgggtct acagttgtta gctcattacc
7261 atcctctaac aggactaggg actgggtcaa tcaacaaaat ttcaatttgg aaccacacat
7321 gcctgggtcc cttaggacag cttttgttac tccaccatct agtacagtct ctagttcagg
7381 cactgtctca accgtgccca agaagttttg gactcctgga caatctgcgt ttaatacgcg
7441 cagacagccg ctattcgcac accttcgtag aaggggggag tcaaatgttt agtgaaaaga
7501 ttactttaaa tttgatttaa attggatttg atttggaatc tttt
//