Typing tool
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Typing tool
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Complete norovirus genomes
| GU980585 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS GU980585 7577 bp RNA linear VRL 10-AUG-2010
DEFINITION Norovirus Hu/GII.3/CBNU1/2006/KOR, complete genome.
ACCESSION GU980585
VERSION GU980585.1
KEYWORDS .
SOURCE Norovirus Hu/GII.3/CBNU1/2006/KOR
ORGANISM Norovirus Hu/GII.3/CBNU1/2006/KOR
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7577)
AUTHORS Yun,S.I., Kim,J.K., Song,B.H., Jeong,A.Y., Jee,Y.M., Lee,C.H.,
Paik,S.Y., Koo,Y., Jeon,I., Byun,S.J. and Lee,Y.M.
TITLE Complete genome sequence and phylogenetic analysis of a recombinant
Korean norovirus, CBNU1, recovered from a 2006 outbreak
JOURNAL Virus Res. 152 (1-2), 137-152 (2010)
PUBMED 20599576
REFERENCE 2 (bases 1 to 7577)
AUTHORS Yun,S.-I., Kim,J.-K., Song,B.-H., Jeong,A.-Y., Jee,Y.-M.,
Lee,C.-H., Paik,S.-Y. and Lee,Y.-M.
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2010) Department of Microbiology, College of
Medicine, Chungbuk National University, 12 Gaeshin-Dong,
Heungduk-Ku, Cheongju-Si, ChungBuk 361-763, South Korea
FEATURES Location/Qualifiers
source 1..7577
/organism="Norovirus Hu/GII.3/CBNU1/2006/KOR"
/mol_type="genomic RNA"
/isolate="CBNU1"
/host="Homo sapiens"
/db_xref="taxon:863240"
/country="South Korea"
/collection_date="2006"
/note="genotype: GII.3"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ADK23786.1"
/translation="MKMASNDASAAAAADSNNDTAKSSSDGVLSSMAVTFKRALGARH
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
PELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMRIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6731
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ADK23787.1"
/translation="MKMASNDATPSNDGAAGLVPEISNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENVVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKIDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 6731..7495
/note="ORF3"
/codon_start=1
/product="VP2"
/protein_id="ADK23788.1"
/translation="MAGAFIAGLAGDMFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQAPKSTPSSGSSVRSHSTQITNLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
3'UTR 7496..7577
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctgaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcataaac agcctccccc gagggaaata ccacaaaggc ctccacgacc
181 acccacccca gaactggtca aaaagatccc tcctccccca cccaacgggg aggatgaact
241 agtggtttct tacagcgcca aagatggcgt ttctggtttg cctgagctta ccactgtctg
301 gcagccggat gaaaccaata cggcgttcag tgttccccca ctcaaccaga gggagaacag
361 ggacgccaag gagccgctaa ccggaacaat cctggaaatg tgggacgggg agatctatca
421 ttacggtctg tatgtggagc gaggtcttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgaac tagcaccact ctctctgttt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactctcag gagactgcat ggagagtcgt tcccctacac
601 agcctttgac aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc agaccttacc aagactggaa
721 caggaaaccc ctccccacca tggatgactc caaattgaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa aggtgagacc
841 gcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 actggaaatc ctaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcttggca acctacatga gaactcttga
1321 cctcgaggag gagaaggcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tctagcagac caagacctgt tgttgttatg atatcaggca ggccagggat
1501 agggaaaact caccttgcca gggagctagc caagaaaatc gcagcttcgc ttacagggga
1561 ccagcgtgtg ggtctcatcc ctcgcaatgg cgttgatcac tgggatgcat ataaggggga
1621 aagagtcgtc ctatgggacg attatggaat gagtaatccc atccacgacg ccctcaggtt
1681 acaggaactt gctgacacct gcccccttac gctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctggccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcatcgac ttcctcgtgt acgcagaagc
1861 ccctgaggtc gagaaggcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 atttagttct gacttctcgc acataaaact ggcgctggct ccgcaaggtg gcttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt tatgaaaacc ctcaccactg gttccctcat
2041 cgcccgagca tcagggttac tccatgagag gttagatgag tatgagctgc agggcccaac
2101 ccccaccacc tttaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgccga
2161 aaacaagtac ggattgttgg acacaatgag agttggaaaa cagctcaagg atgtcaagac
2221 catgccagag ctcaaacaag cactcaagaa tgtcgcaatc aagagttgtc agatagtgta
2281 tggtggctgc acttataggc ttgagtctga cggcaagggt gatgtgaaag ttgacagagt
2341 tcagaacgcc actgtacaga ctaacaatga acttgccggc gccctacatc atcttaggtg
2401 tgccagaatc agatattatg tcaagtgtgt ccaggaggcc ctgtattcca tcatccaaat
2461 tgctggagct gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagatctctg
2521 gtccaagcca caggtggagg atacagagga gaccgctagc aaggatgggt gcccaaaacc
2581 caaggatgat gacgagttcg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagtaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aatggcaaat actccataga
2761 ggaatacctc caggacaggg acaagtatta tgaggaggtg gccatcgcca gggcgaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttca ggccaacaag
2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggctctg agatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgacg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcag
3061 ctttggttca ggttggggct tttgggtttc ccccagcctg ttcataacat caacccatgt
3121 cataccccag ggcgcacagg agttctttgg tgttcccatc aaacaaattc agatacacaa
3181 atcgggtgaa ttctgtcgtt tgaggtttcc aaagccgatc agaactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaagggac cgtggtcaca ctactcatca agaggccaac
3301 tggagaactc atgcccctgg cagccagaat gggaacccat gcaaccatga ggattcaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct tctaacagga tccaacgcta agagtatgga
3421 cctgggcacc acaccaggtg actgtggttg tccctacatt tacaagaggg ggaatgacta
3481 cgtagtcatt ggagtccaca cagctgccgc ccgtggagga aacaccgtca tttgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgac agcaagggga cctactgcgg
3601 tgcaccaatc ttaggtccag gaagtgcccc aaagctcagc accaagacta aattctggag
3661 gtcatccacg gcaccactcc cacctggtac ctatgagcca gcctacctcg gcggcaagga
3721 ccccagagtt aagggtggcc cctcattgca acaagttatg agggaccaac tgaaaccatt
3781 cactgagccc aggggtaaac caccaaaacc aagtgtgtta gaagctgcca agaaaaccat
3841 cgtcaatgtc cttgaacaaa caattgatcc acctcaaaaa tggtcgtttg cgcaggcatg
3901 cgcatccctt gacaagacca cttccagcgg tcacccgcac catatgcgga aaaacgactg
3961 ctggaacggg gaatccttta caggaaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gttcgaggag ggaaagaaca tgaccccagt ctacacgggt gcgctcaagg acgagctggt
4081 caagactgac aagatttatg gcaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatt cggtgcgctc gagcattcgg aggcctgatg gaggaactca aagcacattg
4201 cgtcacacta cctgtcagag tgggcatgaa tatgaatgag gatggtccta tcatctttga
4261 gagacactcc agatataaat accattatga tgctgattac tcccggtggg actcgacaca
4321 acaaagagcc gtgttagcag cagccttaga aatcatggtc aagttctccc cagagccgca
4381 tctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caaaatatca attaatgagg gtctcccctc cggggtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actctctgag gttacaaacc tgtcccctga
4561 cattattcag gctaactctc tcttttcttt ctacggtgat gatgaaattg tgagtacaga
4621 cataaaattg gacccagaaa aactgacagc aaaactcaag gaatacgggt tgaaaccgac
4681 ccgccctgac aagactgaag gaccccttgt catctctgaa gacctgaatg gcctaacctt
4741 cctgcggagg accgtgaccc gcgacccagc aggctggttt ggaaagttgg aacagagttc
4801 aatactcaga caaatgtatt ggactagggg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg ctgcactcca
4921 cggcccagca ttctacagca aaatcagtaa actggtcatt gcagagttga aggaaggtgg
4981 catggatttt tacgtgccaa gacaagagcc aatgttcaga tggatgaggt tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccac tccatctaat gatggtgccg ccggcctcgt cccagagatc agtaatgagg
5161 caatggcgct agatccagtg gcgggtgcag cgatagcagc gcccctcact ggtcagcaaa
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagtttacag
5281 tatcccctag gaattcccct ggtgaagtgc ttctcaattt ggaattgggc ccagaaataa
5341 atccctattt ggcccatctt gctagaatgt ataatggtta tgcaggtggg tttgaagtgc
5401 aggtagtcct agctggaaat gcgtttacag caggaaagat aatctttgca gctatacccc
5461 ctaatttccc aattgataat ctaagcgcag cacagatcac aatgtgccca catgtgattg
5521 tggatgtcag acagttggaa ccggtcaacc ttccgatgcc tgacgttcgc aataacttct
5581 tccactacaa ccaagggtct gattcgagat tgcgcttagt tgcaatgctg tatacacctc
5641 ttagggcaaa taattctggg gatgatgttt ttactgtgtc ttgtagggtg ctgactaggc
5701 ctagccctga cttttcattt aatttccttg tgccacctac tgtggagtca aagacaaaac
5761 ccttcaccct ccctattctg actatctctg aaatgtccaa ttctaggttt ccagtgccga
5821 ttgattctct gcacaccagc ccaactgaaa atgttgttgt ccagtgccaa aatggacgcg
5881 tcactcttga tggtgagttg atgggcacca cccaactctt acctagtcaa atctgtgctt
5941 ttaggggcgt gctcaccaga tcaacaagca gggccagtga ccaggccgac acagcaaccc
6001 ctaggttgtt taattattat tggcacatac aattggataa tctaaatggg actccttatg
6061 atcctgcaga agacatacca ggccccctag ggacaccaga tttccggggc aaagtctttg
6121 gcgtggccag ccagagaaat cccgacagca caactagagc acatgaagca aagatagaca
6181 caacagctgg tcgttttacc ccaaaactag gctcattaga gatatccact gaatctggtg
6241 actttgatca aaaccaacca acaagattca ccccagttgg cattggggtt gaccacgagg
6301 cagatttcca acaatggtct ttacccgact attctggtca gttcacccac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacagt
6421 taccatcttc tggtgggcga tccaacggga ttctagactg cctggtcccc caagaatggg
6481 ttcagcactt ctaccaagaa tcggcccccg cccaaactca agtggccctg gttaggtatg
6541 tcaaccctga cactggtaga gtgttgtttg aggccaagct gcacaaattg ggtttcatga
6601 ctatagctaa gaatggtgac tctccaataa ctgtcccccc aaatggatac tttaggtttg
6661 aatcttgggt gaacccattt tatacacttg cccccatggg aactgggaat gggcgtagaa
6721 ggattcaata atggctggag cttttatagc aggattagct ggtgatatgt tcacaaacac
6781 tgtaggatct ctagttaatg caggggctaa tgccattaat caaaaagttg attttgaaaa
6841 caataaatat ttgcaaaatg cttcctttaa tcatgataag gaaatgttaa atgcacaaat
6901 tgaggcaaca aagaggttac aggctgacat gattgctatc aaacaagggg ttttgaccgc
6961 tggcggcttt tctcctactg atgcagcccg cggggcaatt aatgccccca tgacaaaagt
7021 cctagattgg aatggaacga ggtactgggc accaaatgcc acctctacaa cctcgatgtc
7081 gggtggcttc acaaaccagg ctgtgcacag aaccacgcca aattttaaaa cgaaccaggc
7141 ccccaaatcc acacccagca gtgggtcttc agtgaggtca cactcaaccc aaatcactaa
7201 tctgagctca cactcgtccg ggtcgtctcg atccagcggg tctacagttg ttagctcatt
7261 accatcctct aacaggacta gggactgggt caaccaacaa aattttaatt tggaaccaca
7321 catgcctgga tcccttagga cagcttttgt tactccacca tctagtacag cctctagttc
7381 aggcactgtc tcaaccgtgc ccaaaaatgt tttggactcc tggacatctg cgttcaatac
7441 gcgcagacag ccgctattcg cacaccttcg tagaaggggg gagtcaaatg tttagtgaaa
7501 agattacttt aaatttggtt taaattggat ttgattagga atcttttaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaa
//