Typing tool
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Typing tool
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Complete norovirus genomes
| GU930737 | GII.6 | |
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| GII.P7 |
ORF1: 1..5062
ORF2: 5043..6689
ORF3: 6689..7465
LOCUS GU930737 7519 bp RNA linear VRL 25-JUL-2016
DEFINITION Norwalk-like virus isolate E99-13646 polyprotein gene, partial cds;
and major capsid protein VP1 and minor capsid protein VP2 genes,
complete cds.
ACCESSION GU930737
VERSION GU930737.1
KEYWORDS .
SOURCE Norwalk-like virus
ORGANISM Norwalk-like virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7519)
AUTHORS Sharp,T.M., Ajami,N.J., Neill,F.H., Atmar,R.L. and Estes,M.K.
TITLE Characterization of calicivirus p22L proteins
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7519)
AUTHORS Sharp,T.M., Ajami,N.J., Neill,F.H., Atmar,R.L. and Estes,M.K.
TITLE Direct Submission
JOURNAL Submitted (24-FEB-2010) Molecular Virology and Microbiology, Baylor
College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
FEATURES Location/Qualifiers
source 1..7519
/organism="Norwalk-like virus"
/mol_type="genomic RNA"
/isolate="E99-13646"
/isolation_source="stool specimen"
/host="Homo sapiens"
/db_xref="taxon:95340"
/country="USA: Texas, Texas Children's Hospital"
/collection_date="06-Mar-1997"
/note="genotype: GII.6"
CDS <1..5062
/note="contains N terminal protein, NTPase, p22L, VPg,
Pro, and Pol"
/codon_start=2
/product="polyprotein"
/protein_id="ADF45588.1"
/translation="PNAVDDIIITAPSNKKEVCALSVIKVGFNKMLGAIPKGTKAPSR
DQHCPTVRHPLHILTVPPEPPKGEDTVQFDAKSETVRGLPDLTTVQNEHENTPYTVPP
LSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISLATIELTPIS
LYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLSRRSISRT
TGFFKPYQSWNRRPLSKPVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLHL
LASCDWTFAGIVETVILLAELFNIFWTPPDVSNFIASLIGDFELQGPEDLAVELVPVV
MGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVVKWFFPKKEEKAEME
TLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIVG
TINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHLAKSIANTMS
GDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTSPVTLNCDRI
ENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIEKVKRDFPGQP
DMWKDHFKPDFSHIKLSLAPQGGFDKNGNTPDGKGTLRSLTQGSLTARVAGLVHERRD
EFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMIVGAALKNVKTLEDLKVALRD
VKFNDCEIIYRNSKYRVSSNGKGSVSVDKVEDQASQTANEVGSALLRLIQARARYYVS
CFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESDKEVAQGRWEIEPKD
TEPEGKKRTNKEGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRYY
EEVAVARATEEDFCEEDEAKIRRWIFRPTSKLRKEDRGVLGLVAPGSVVESRRLFAFL
PKVNLCLDDTRSVAYIKRLDFEAPPSVWSRIVPSGSGWGFWVSSDLLITTPLVLPKGV
RELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILIKRPTGEM
IPLAVRMGSTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDI
VVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKF
WRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRGKPPRPAVLEEA
KKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQA
SKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGL
MDSMKASCIAYPCRVGMNVNENGRIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAME
VMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTL
SAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTE
GPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHS
QRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLST
WEGDRNLAPEGVNEDGVE"
CDS 5043..6689
/codon_start=1
/product="major capsid protein VP1"
/protein_id="ADF45586.1"
/translation="MKMASNDAAPSNDGAANLVPEANSEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSEEGATRAHEVHIDTTNPRYTPKLGSVFMHSESTDFDD
GQPTRFTPIGMGADDWRQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAG
GYGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVA
NSGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 6689..7465
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="ADF45587.1"
/translation="MAGAFFAGLASDAITNGVGSLINAGANAINQKVEYDFNKQLQLA
SLKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPTDAARGAVNAPTTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSDPSKIKVNSDSASVYNSVSTAPSQST
RSTVLTMGSGSSRTTPSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSHGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
3'UTR 7466..7519
ORIGIN
1 tccaaacgct gtcgatgaca ttatcatcac agccccatct aataaaaaag aggtttgtgc
61 actctccgtc attaaagttg gatttaataa aatgctgggt gccattccca aagggaccaa
121 agcacccagc agggatcagc actgccccac ggtgagacac cctctccata tactaacagt
181 tccccctgaa cccccaaaag gtgaagacac cgtgcagttt gatgcgaagt cagaaactgt
241 gcgtgggtta ccagacttaa caacggtgca aaatgaacac gaaaacaccc catacactgt
301 ccccccttta agtgagaggg aacacagacc agccactgag ccgcttcccg gcacaatact
361 ggagatgtgg gatggtgaat tctaccacta ttccgtgtat gtcagcggcg gcaaagccct
421 aggggttcac aaacccccag cggcaataag cctcgcgacg atagagctca cccccatatc
481 tctttactgg aggcccgttt acactcccaa ctacttggtc tgcccagaca cattgaaagg
541 tctcgccggt gagaagttcc cctacacagc cttcagcaac aactgttaca acttctgttg
601 ctgggtgctt gagctcaatg acacgtggct tagcagaaga agcatctcca ggactaccgg
661 cttcttcaaa ccatatcagt cctggaatag gagacccctt tccaaaccgg ttgatgatgg
721 gaaaattaaa aaggtggcca acgcaatcct ctgtgcactt ggatcactgt tttcaaaacc
781 aatcaaagac ctgttgggca aactcaaacc attgaatttg ctacacctgc tcgcgtcatg
841 tgattggacg tttgcgggca tagtggagac agttatccta ttggcggaac ttttcaacat
901 cttttggaca ccgccagatg tctccaactt tatagcctcc ctaataggtg attttgaatt
961 gcaagggcct gaggacctgg ctgtggagct tgtccccgta gtcatgggtg gcataggaat
1021 ggttctcggc tttaccgctg agaagatagg ccgcatgctg tcgtccgctg cgtcgacatt
1081 acgggcatgt aaagacctgg ggaattatgc ccttgacata ctcaaactgg ttgtgaagtg
1141 gttcttccca aagaaagaag agaaagccga gatggaaacc ttaagggcga ttgaggatgc
1201 cgtcctggac atggaagcta tagggaacaa tcatctcaca accctcctca aggataagga
1261 tagtctcacg gctttcatga agactctgga cctagaagag gagaaggcaa ggaagctgtc
1321 tactaaatca tcctcgccag acatcgtcgg caccatcaat gccatactgg ccagaatagc
1381 tgctgccaga tccctccttc acaaggccaa agaagaaatg tttagtagga tcagaccggt
1441 ggttgtcatg atctcaggca gacctggcat tggcaaaact cacatggcaa gacacttggc
1501 taagagcatc gccaacacca tgagtggcga ccagagagtc gggctcgttc cgcgcaacgg
1561 ggtcgatcac tgggacgcct acaggggaga gagggtggtc ttatgggatg attatggcat
1621 ggggaaccct gttaaagatg ctctaacact gcaagagctg gccgacacta gtccagtcac
1681 tctgaattgt gacagaattg agaacaaggg gaagatgttc gacagtgatg tcatcataat
1741 cacgaccaac ctggtcaacc cagcgcccct cgattatgta aacttcgagg cgtgctccag
1801 aagggttgac tttctggtct atgcagagtc accggaaatt gagaaggtta agagagattt
1861 tcctggccaa cctgacatgt ggaaggatca ttttaagcca gatttctccc acataaaatt
1921 gagtctagcc ccccagggcg ggtttgacaa gaatggtaac accccggatg gtaagggcac
1981 cttgcgatcc ctaacccagg ggtccctgac tgccagggtt gcgggtcttg ttcatgagag
2041 gagagatgag tttcagcttc aagggaacga cctccaaaca tacaactttg acaccaacag
2101 ggtctctgca ttcaggaagc tggccgcaga caacaagtat ggaatcatgg aaacaatgat
2161 agtgggtgcg gcgctcaaga atgtcaagac cttggaagat ctgaaagtcg ccttgaggga
2221 tgtgaagttc aatgattgtg aaataattta caggaactcc aaatatcgag tctcttccaa
2281 cggtaagggt tctgtctctg ttgataaagt tgaggaccaa gcatcccaga ctgcaaacga
2341 ggtgggctca gcactcctta gactcataca ggcaagggcc agatactatg tcagctgctt
2401 tcaagatctc gtctacactc tcatacaggt tgccggagcg tcattcgttg ttaacagaat
2461 ctccaagagg ttctgctggg aaagatgggt gaaaccaacc gagacccagg aaacgagtga
2521 atccgataag gaagtggccc aaggtagatg ggagattgaa cccaaggaca cagaaccaga
2581 gggtaagaag cgcacgaata aggaagggag aggcaagaaa cacacagctt tctccagtaa
2641 aggcctgagt gatgaggagt atgacgagtt caagagaatc agggaggaaa ggaacgggaa
2701 atactccatt gaggaatacc tgcaagaccg ggaccgctac tatgaagaag tggcagttgc
2761 ccgggcaact gaagaggact tctgtgaaga ggatgaggcc aagataaggc gatggatctt
2821 ccgtcctacc tcgaaactta gaaaggaaga taggggggtg cttggtttgg tcgcccctgg
2881 ctcagtcgtt gaaagcagga gactattcgc cttccttcca aaagtcaacc tgtgtcttga
2941 cgacaccaga agcgtggcct acattaagag acttgatttc gaggctcccc cgagcgtctg
3001 gtcacgtatt gtcccttcgg ggtctggttg gggtttctgg gtttcatccg atctcctgat
3061 cacaacaccc cttgtcctac ctaagggggt tagggaactc tttggagttg aaatcaaaca
3121 gatccaaatt cataagtctg gagagttttg caggtttaga ttcccaagac caatcaggcc
3181 agatgtcaca ggactcgtgt tggaggaagg tgctccagaa ggcactgtct gttccatact
3241 cataaagaga cctacaggtg agatgatccc cctggcggtg aggatgggga gcacgcatgc
3301 atccatgaaa atacagggta ggactgtcgg tggccagatg ggaatgctcc tcacaggggc
3361 aaacgcgaag aacatggatc ttggcaccgg tcctggtgac tgcggttgcc cctacatcta
3421 caaacgtggc aatgacatag ttgtcgcggg tgtccacacc gcagcagccc ggggaggcaa
3481 cactgtcata tgtgccaccc aagggcaaga tggggaggca gtccttgagg gaaatgaaaa
3541 ccttggcact tactgcggtg ccccaatttt gggtcctggc aaggcgccca aactcagcac
3601 gaagaccaaa ttctggcgtt catcaccaga cgctttgccg cctggcacat atgaacctgc
3661 ttacctggga ggtaaggacc ctagagtaga aaagggacca tccctgcagc aagttatgag
3721 ggatcagcta agacctttca cagaacccag gggcaaacca cctaggcctg cagtcttaga
3781 agaagccaaa aagacagtga tgaatgtttt agaacaaacc attgaccctg ctaagccatg
3841 gacctactcg caagcatgtg cctcactgga caagaccact tccagtggta gtccccacca
3901 cgtcaagaaa aatgatcatt ggaatgggga atccttcact ggcccccttg cagatcaagc
3961 atccaaagcc aacctcatgt atgaacaggc caaacatgtg cagcccgtgt acacggccgc
4021 gctcaaagat gagcttgtca agactgacaa gatctacaaa aagataaaga agaggctctt
4081 gtgggggtcg gaccttggca cgatgatcag gtgcgccagg gcctttggcg gtctcatgga
4141 tagcatgaag gcaagttgta tagcctaccc atgtagggta ggaatgaacg tgaatgaaaa
4201 tgggcgcatc atatttgaca aacactctaa gtacaggtat cactatgatg ctgactattc
4261 taggtgggat tcaacccagc aaaggagcat tctctcagcc gctatggaag tgatggtgcg
4321 gttttctgcc gaaccagaac tggcacaagt ggtcgcagag gaccttctgg cacccagcca
4381 actagatgtt ggcgattttg tcatctcagt ccaggagggt ctgccatcag gagtcccatg
4441 cacatcacaa tggaattcaa tagcacactg gatcctaacc ttgagtgcaa tggcagaagt
4501 gtcaggtctc tcaccagatg ttgtccaagc ccactcctgt ttttcattct acggcgacga
4561 tgagatcgtt agcactgaca tcaaccttga ccccatgaag ttgacacaga aactcaggga
4621 gtacggtctg gtccccaccc gacctgacaa gactgaaggt cccctcgtga taactgaaga
4681 cctcaccggc ctaacgttcc tgcgtaggtc gattgcacgg gacccagctg ggtggtttgg
4741 aaaattggac caagactcaa tcctcaggca gttgtactgg acaaggggac ccaatcatga
4801 gaacccatac gagagcatgg tccctcattc tcagcgggcc acacaactca tggcccttct
4861 tggtgaggct tcactacatg gtcctcagtt ttacaagaaa gttagcaaga tggtcatcaa
4921 tgagattaag agtggtggtc tggagtttta tgtgcccaga caagaggcca tgtttaggtg
4981 gatgagattc tctgacctca gcacatggga gggcgatcgc aatcttgctc ccgagggtgt
5041 gaatgaagat ggcgtcgaat gacgctgctc catcgaatga tggtgctgcc aacctcgtac
5101 cagaggccaa cagtgaggtt atggcacttg aaccggtggt gggagcctca attgcagctc
5161 ctgtcgtcgg tcaacagaat ataattgacc cctggattag agaaaatttt gttcaggcac
5221 cacagggtga gtttactgtt tcaccaagga actcacctgg tgagatgctt ttaaatcttg
5281 aattaggccc agagcttaac ccttatctga gtcatttgtc ccgcatgtac aacggctatg
5341 ctggtggtat gcaggttcag gtggtcctag ctgggaatgc gttcacagct ggtaaaatca
5401 tctttgccgc cgttccacca catttccctg tagagaatat tagtgcagcc caaatcacaa
5461 tgtgccccca tgtgatcgtt gatgtaagac agcttgagcc agtgcttttg cccctccctg
5521 acataaggaa tagattcttt cattataatc aggaagacac cccccggatg agacttgtgg
5581 ctatgttata cacacccctt agagcaaatt ctggtgagga tgtattcaca gtgtcttgca
5641 gggtcttgac ccgcccagcc cccgattttg agttcacgtt cttagtgcca ccaactgtgg
5701 agtcaaagac caagcctttc acactcccta ttctgactct tggagagcta tccaactcca
5761 gattccccgc tccaatagat atgctgtaca cagatcctaa tgaggcaatt gtggtacaac
5821 cacaaaatgg caggtgcacc ctagacggaa cacttcaagg gaccacccag ctggtgccca
5881 cccaaatttg ctccttcagg ggcacgctca ttagccagac gtcgaggtct gcagattcaa
5941 cagattcagc tccacgggta aggaaccacc ctcttcacgt tcagctgaag aacctcgatg
6001 ggacaccata tgatccaaca gatgaggtgc cggcggttct aggtgccata gatttcaagg
6061 gaactgtgtt tggagttgct agccaaagaa acaccacagg aaactctgaa gagggcgcga
6121 cccgcgccca tgaagtacac attgacacca caaaccctag atacacccca aaacttggct
6181 ctgtgtttat gcattctgag tccactgatt ttgatgatgg acagcccacc cgctttaccc
6241 ctattggcat gggagccgat gattggcgcc aatgggagtt gcctgaatac tctggtcacc
6301 tcactcttaa catgaacctg gcccccgcag ttgcccctgc tttccccggt gagcgcatcc
6361 tcttcttcag gtcagttgtg ccttctgctg gtggttatgg gtcgggccag atagattgcc
6421 tcatcccaca ggaatgggtt cagcacttct atcaggaggc cgccccatca caatctgcgg
6481 tggctctcat tagatatgtc aaccccgaca ctgggagaaa catctttgag gcaaagctac
6541 atagagaggg gttcatcact gtggcaaatt ctggaaacaa ccccatagtt gtgcccccaa
6601 atggttactt caggttcgag gcttgggtta atcaatttta cacactcacc cccatgggaa
6661 ctggacaggg gcgcagaaga gttcaataat ggcaggagct ttctttgctg ggttggcaag
6721 tgacgccata acaaatggtg tcgggtccct gatcaatgct ggggccaatg caattaacca
6781 aaaggtagag tatgatttta acaaacaact ccaattggca tccctcaaac atgacaagga
6841 gatgttgcag tcacaagttc tggccactaa acagcttcag caagaaatga tgaacataag
6901 gcaaggggtt ttgaccgctg gcggcttttc ccctacagat gccgcgagag gcgctgtaaa
6961 cgcgccgacg acaaaaattc tggattggaa tggaacgagg tattttgccc caaacagtat
7021 gaaaacaacc agttattcag gccagttctc tagtaaccct gtgcataggc aacccacctt
7081 accccgctct gatccctcaa aaatcaaggt taatagtgat tctgctagcg tgtataactc
7141 tgtatccact gctccttcac aatcaacccg ttcaacggtt ttgactatgg ggtctgggtc
7201 atccagaaca acaccctctt ccgcagcagc ttccactcta tctaggacta gtgactgggt
7261 aagaggacaa aatgagaggc ttagcccgtt tatggatggt gctctccaaa caacttttgt
7321 cacaccacca tcgagcaagg cttcatcaca tgggtcggtc tcaaccgttc ccaaagctgt
7381 tttggactcc tggactccta tgttcaacac ccataggcag cctctcttcg ctcacgtgcg
7441 taggcgaggg gagtcacaaa tttagtgaaa agattgatta ggtttttctt tcttccttct
7501 tcttcctttt ctttctttt
//