Typing tool
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Complete norovirus genomes
GU299761 | GI.8 | ||
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GI.P8 |
ORF1: 1..814 ORF2: 798..2429 ORF3: 2429..3070LOCUS GU299761 3150 bp RNA linear VRL 24-JUL-2016 DEFINITION Norovirus Hu/GI.8/2008890321/2008/US polymerase gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION GU299761 VERSION GU299761.1 KEYWORDS . SOURCE Norovirus Hu/GI.8/2008890321/2008/US ORGANISM Norovirus Hu/GI.8/2008890321/2008/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3150) AUTHORS Vega,E. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (10-DEC-2009) National Calicivirus Laboratory, Centers for Disease Control and Prevention, 1600 Clifton Rd. MS G04, Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..3150 /organism="Norovirus Hu/GI.8/2008890321/2008/US" /mol_type="genomic RNA" /strain="Hu/GI.8/2008890321/2008/US" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:708161" /country="USA" /collection_date="Jul-2008" CDS <1..814 /codon_start=2 /product="polymerase" /protein_id="ADB54833.1" /translation="DADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPS EMDVGDYVISVKDGLPSGFPCTSQVNSINHWIMTLCALSEVTGLSPDVIQSQSYFSFY GDDEIVSTDIEFDPAKLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDA IGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQRKVQLISLLGEAALHGEKFYRK IASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV" CDS 798..2429 /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="ADB54834.1" /translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ LQGTTTVSAACVARMRGRIFNNNGNYGVNLTELDGNPYHAFDSPAPLGFPDFGNCDLH MTFVKINPNELSSGDPSGKVVIHSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW VSNREGATLNLWAVPNYGSSLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS" CDS 2429..3070 /note="minor capsid protein" /codon_start=1 /product="VP2" /protein_id="ADB54835.1" /translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARMIAGAPPTKVVDWNG VRISAPTSSAITLKSGSFMSVPVMNYKTNKNVTGIDNPNYAPSGSSMISRTSQWVESQ NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK" 3'UTR 3071..3150 ORIGIN 1 tgatgctgat tacactgctt gggactcaac gcaaaacaga gagattatga tggagtcctt 61 caatatcatg tgcaagctca cagccaatcc ctccttggct gcggtggtgg ctcaggacct 121 actctcccca tctgagatgg atgttggtga ttatgtaatc agtgttaaag atggtctgcc 181 atctggcttt ccatgcacct cacaagtcaa cagcattaac cactggatca tgaccctatg 241 tgcactatca gaggtcactg gcttatcccc tgatgtaata caatcacaat cctacttctc 301 cttctacggt gatgatgaga tagtctcaac agacattgaa tttgacccag ctaaattgac 361 acaaatatta aaagagtatg gcctgaaacc cacaaggccc gataaaactg atggccccat 421 tatagtcagg caacaggtgg atggtctggt cttccttcgt cgcacaattt cgaaggacgc 481 tattgggtac caaggtcgac ttgaccgcaa ctccattgaa agacaactct ggtggacccg 541 cggacccaac catgaagacc cgtttgagac tctggtgcca cactcacaaa gaaaagttca 601 attgatatcc ctactgggtg aggccgccct acatggtgaa aaattctaca ggaagatagc 661 cagtagggtc atccaagaag ttaaggaagg gggtttggag atctatatcc ctgggtggca 721 ggccatgttc cgctggatgc gattccatga cttaagtttg tggacaggag atcgcgatct 781 cttgcccgat tatgtaaatg atgatggcgt ctaaggacgc cccaacaaac atggatggca 841 ccagtggtgc cggtcagctg gtaccagagg caaatacagc tgaaccttta ccaataaaac 901 cagtggccgg ggctgcgact gcggttgcaa ccgccggtca ggtaaatatg attgacccct 961 ggataatgaa taattttgta caggctcccc aaggggagtt taccatttcc ccaaataata 1021 cacctggtga tattttattt gatttgcaat taggaccaca tcttaatcct ttcttggctc 1081 atttgtctag aatgtataat ggttgggttg ggaatatgca ggtccgcata atgcttgctg 1141 gtaatgcctt ttcagctgga aagattattg tgtgctgcat accgccgggt ttttcttctc 1201 aatctatttc tattgctcaa gctacaatgt tcccacatgt catagctgat gttagagtgt 1261 tagaacctat tgatgtaccc ttagatgatg ttagaaatgt cctttttcat aataatgata 1321 acccccaaac gatgagattg ctttgcatgt tgtatacacc ccttcggtct ggtggtacat 1381 cttcaggtac agatcctttt gtcattgctg gtcgtgtctt gacctgcccc acacctgatt 1441 ttagtttctt gttccttgtc cctcctgata tcgagcaaag aactaagcca ttcagtgtac 1501 ccaatatccc tatgaacctg atgtccaatt cccgtgtttc aatgttgatt gatggtatga 1561 tggtttcaaa tgatcagaat caagtccccc agtttcagaa tggtcgagtc actttagatg 1621 gacagctgca gggtaccacc acagtttcag ctgcgtgtgt agcaaggatg aggggacgca 1681 tttttaataa taatggcaat tatggtgtga acctgactga actggatggc aatccttatc 1741 atgcctttga tagcccggct cctttaggct ttcctgactt tgggaattgt gatttgcaca 1801 tgacctttgt taaaattaat cccaatgagt tgtcctctgg agacccttct ggcaaagtgg 1861 tcattcattc ctacgatgcc acttttgccc cccatcttgg tactgtcaaa ctggagaatg 1921 atgatgagct agctcggttt gtgggtaagg aggtagtact ggagctgacg tgggtttcca 1981 acagagaggg tgccaccctt aatctatggg ctgttccaaa ttatggttcc agtttgacac 2041 aggcgtcaca gcttgcccca ccaatttacc cccctgggtt tggtgaggct attgtgtatt 2101 tcacctctac ttttccaaca gtcagcaacc caaaagtccc atgtacactt cctcaagaat 2161 ttgtttcaca ctttgtcaat gaacaggccc ccacacgcgg cgatgccgct cttcttcatt 2221 atgttgatcc tgacacacac cgtaatcttg gagagtttaa gatgtaccct gagggctaca 2281 tgacatgtgt ccctaatgct ggtggtgggc cacaaacctt accaatcaat ggtgtatttg 2341 tcttcatttc ttgggtttct agatattacc agttaaagcc tgtgggaact gccggtgcgg 2401 ctaggaggct tggtcttagg agatcataat ggcccaggct gtcttgggag ccattgctgc 2461 gactgcagca ggaagtgctg tgggagcagg tattgaagct ggcacacagg ccgccctaca 2521 acatcaaagg tatcaacaag atttaaatat gcagtcccta tcctttcaac atgataaaga 2581 aatgttaggc ttacaagtag atgcttctaa tgctttattg caaagaaatt tggccacaag 2641 atataatttg ctgagtgcag caggcttgtc gtctgcagat gctgctagga tgatagcagg 2701 tgctccacca actaaagtag tggactggaa tggagtcaga atatctgccc ccacatcaag 2761 tgcaataacc ctaaaatctg gcagttttat gtcagtgcca gtcatgaatt acaaaaccaa 2821 caagaatgtg acaggcatag acaacccaaa ttatgcaccc agtggctcat caatgattag 2881 tcgcaccagc caatgggtgg aatctcaaaa ttcattgcgc tcgcttgatc ctttccatag 2941 gagcgcgttg caaacaacgt gggttactcc tccaggatcc acatctgtgt caacagtgtc 3001 aagcacttca acaataccta ggtattttaa tactgaaaga cttccgttat tcgcaaatct 3061 gcggaagtaa gtttttgtaa tataaagtgg gcattatatt cagattggct tttgattata 3121 attaatttgg ctgattagaa atttaatgtt //