Typing tool
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Typing tool
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Complete norovirus genomes
| GU299761 | GI.8 | |
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| GI.P8 |
ORF1: 1..814
ORF2: 798..2429
ORF3: 2429..3070
LOCUS GU299761 3150 bp RNA linear VRL 24-JUL-2016
DEFINITION Norovirus Hu/GI.8/2008890321/2008/US polymerase gene, partial cds;
and VP1 and VP2 genes, complete cds.
ACCESSION GU299761
VERSION GU299761.1
KEYWORDS .
SOURCE Norovirus Hu/GI.8/2008890321/2008/US
ORGANISM Norovirus Hu/GI.8/2008890321/2008/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3150)
AUTHORS Vega,E. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (10-DEC-2009) National Calicivirus Laboratory, Centers
for Disease Control and Prevention, 1600 Clifton Rd. MS G04,
Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..3150
/organism="Norovirus Hu/GI.8/2008890321/2008/US"
/mol_type="genomic RNA"
/strain="Hu/GI.8/2008890321/2008/US"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:708161"
/geo_loc_name="USA"
/collection_date="Jul-2008"
CDS <1..814
/codon_start=2
/product="polymerase"
/protein_id="ADB54833.1"
/translation="DADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSPS
EMDVGDYVISVKDGLPSGFPCTSQVNSINHWIMTLCALSEVTGLSPDVIQSQSYFSFY
GDDEIVSTDIEFDPAKLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDA
IGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQRKVQLISLLGEAALHGEKFYRK
IASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
CDS 798..2429
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="ADB54834.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA
TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG
WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV
PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL
FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ
LQGTTTVSAACVARMRGRIFNNNGNYGVNLTELDGNPYHAFDSPAPLGFPDFGNCDLH
MTFVKINPNELSSGDPSGKVVIHSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW
VSNREGATLNLWAVPNYGSSLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT
LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL
PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS"
CDS 2429..3070
/note="minor capsid protein"
/codon_start=1
/product="VP2"
/protein_id="ADB54835.1"
/translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL
SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARMIAGAPPTKVVDWNG
VRISAPTSSAITLKSGSFMSVPVMNYKTNKNVTGIDNPNYAPSGSSMISRTSQWVESQ
NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK"
3'UTR 3071..3150
ORIGIN
1 tgatgctgat tacactgctt gggactcaac gcaaaacaga gagattatga tggagtcctt
61 caatatcatg tgcaagctca cagccaatcc ctccttggct gcggtggtgg ctcaggacct
121 actctcccca tctgagatgg atgttggtga ttatgtaatc agtgttaaag atggtctgcc
181 atctggcttt ccatgcacct cacaagtcaa cagcattaac cactggatca tgaccctatg
241 tgcactatca gaggtcactg gcttatcccc tgatgtaata caatcacaat cctacttctc
301 cttctacggt gatgatgaga tagtctcaac agacattgaa tttgacccag ctaaattgac
361 acaaatatta aaagagtatg gcctgaaacc cacaaggccc gataaaactg atggccccat
421 tatagtcagg caacaggtgg atggtctggt cttccttcgt cgcacaattt cgaaggacgc
481 tattgggtac caaggtcgac ttgaccgcaa ctccattgaa agacaactct ggtggacccg
541 cggacccaac catgaagacc cgtttgagac tctggtgcca cactcacaaa gaaaagttca
601 attgatatcc ctactgggtg aggccgccct acatggtgaa aaattctaca ggaagatagc
661 cagtagggtc atccaagaag ttaaggaagg gggtttggag atctatatcc ctgggtggca
721 ggccatgttc cgctggatgc gattccatga cttaagtttg tggacaggag atcgcgatct
781 cttgcccgat tatgtaaatg atgatggcgt ctaaggacgc cccaacaaac atggatggca
841 ccagtggtgc cggtcagctg gtaccagagg caaatacagc tgaaccttta ccaataaaac
901 cagtggccgg ggctgcgact gcggttgcaa ccgccggtca ggtaaatatg attgacccct
961 ggataatgaa taattttgta caggctcccc aaggggagtt taccatttcc ccaaataata
1021 cacctggtga tattttattt gatttgcaat taggaccaca tcttaatcct ttcttggctc
1081 atttgtctag aatgtataat ggttgggttg ggaatatgca ggtccgcata atgcttgctg
1141 gtaatgcctt ttcagctgga aagattattg tgtgctgcat accgccgggt ttttcttctc
1201 aatctatttc tattgctcaa gctacaatgt tcccacatgt catagctgat gttagagtgt
1261 tagaacctat tgatgtaccc ttagatgatg ttagaaatgt cctttttcat aataatgata
1321 acccccaaac gatgagattg ctttgcatgt tgtatacacc ccttcggtct ggtggtacat
1381 cttcaggtac agatcctttt gtcattgctg gtcgtgtctt gacctgcccc acacctgatt
1441 ttagtttctt gttccttgtc cctcctgata tcgagcaaag aactaagcca ttcagtgtac
1501 ccaatatccc tatgaacctg atgtccaatt cccgtgtttc aatgttgatt gatggtatga
1561 tggtttcaaa tgatcagaat caagtccccc agtttcagaa tggtcgagtc actttagatg
1621 gacagctgca gggtaccacc acagtttcag ctgcgtgtgt agcaaggatg aggggacgca
1681 tttttaataa taatggcaat tatggtgtga acctgactga actggatggc aatccttatc
1741 atgcctttga tagcccggct cctttaggct ttcctgactt tgggaattgt gatttgcaca
1801 tgacctttgt taaaattaat cccaatgagt tgtcctctgg agacccttct ggcaaagtgg
1861 tcattcattc ctacgatgcc acttttgccc cccatcttgg tactgtcaaa ctggagaatg
1921 atgatgagct agctcggttt gtgggtaagg aggtagtact ggagctgacg tgggtttcca
1981 acagagaggg tgccaccctt aatctatggg ctgttccaaa ttatggttcc agtttgacac
2041 aggcgtcaca gcttgcccca ccaatttacc cccctgggtt tggtgaggct attgtgtatt
2101 tcacctctac ttttccaaca gtcagcaacc caaaagtccc atgtacactt cctcaagaat
2161 ttgtttcaca ctttgtcaat gaacaggccc ccacacgcgg cgatgccgct cttcttcatt
2221 atgttgatcc tgacacacac cgtaatcttg gagagtttaa gatgtaccct gagggctaca
2281 tgacatgtgt ccctaatgct ggtggtgggc cacaaacctt accaatcaat ggtgtatttg
2341 tcttcatttc ttgggtttct agatattacc agttaaagcc tgtgggaact gccggtgcgg
2401 ctaggaggct tggtcttagg agatcataat ggcccaggct gtcttgggag ccattgctgc
2461 gactgcagca ggaagtgctg tgggagcagg tattgaagct ggcacacagg ccgccctaca
2521 acatcaaagg tatcaacaag atttaaatat gcagtcccta tcctttcaac atgataaaga
2581 aatgttaggc ttacaagtag atgcttctaa tgctttattg caaagaaatt tggccacaag
2641 atataatttg ctgagtgcag caggcttgtc gtctgcagat gctgctagga tgatagcagg
2701 tgctccacca actaaagtag tggactggaa tggagtcaga atatctgccc ccacatcaag
2761 tgcaataacc ctaaaatctg gcagttttat gtcagtgcca gtcatgaatt acaaaaccaa
2821 caagaatgtg acaggcatag acaacccaaa ttatgcaccc agtggctcat caatgattag
2881 tcgcaccagc caatgggtgg aatctcaaaa ttcattgcgc tcgcttgatc ctttccatag
2941 gagcgcgttg caaacaacgt gggttactcc tccaggatcc acatctgtgt caacagtgtc
3001 aagcacttca acaataccta ggtattttaa tactgaaaga cttccgttat tcgcaaatct
3061 gcggaagtaa gtttttgtaa tataaagtgg gcattatatt cagattggct tttgattata
3121 attaatttgg ctgattagaa atttaatgtt
//