Typing tool
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Typing tool
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Complete norovirus genomes
| GU292831 | GII.16 | |
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| GII.P16 |
ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7498
LOCUS GU292831 7577 bp RNA linear VRL 22-APR-2019
DEFINITION Norovirus GII strain
Hu/GII.P16-GII.16/RUS/Novosibirsk/Nsk-410/2005, complete genome.
ACCESSION GU292831
VERSION GU292831.4
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7577)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 7577)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (06-DEC-2009) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 7577)
AUTHORS Zhirakovskaya,E.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2018) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Apr 22, 2019 this sequence version replaced GU292831.3.
FEATURES Location/Qualifiers
source 1..7577
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Hu/GII.P16-GII.16/RUS/Novosibirsk/Nsk-410/2005"
/isolate="GII.16/Nsk-410/2005/RUS"
/isolation_source="feces"
/host="Homo sapiens; sex: F; age: 9 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="02-Aug-2005"
/note="genotype: GII.P16/GII.16"
5'UTR 1..4
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AZL94853.1"
/translation="MKMASNDATVAVACDNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEPAVRFEVKSGISGLPELTTVPQLD
VTNTAFSVPPLSLRENKEAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVEMTPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGK
IKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGEYELQGPED
IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEASELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
AKKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTTTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKTM
EELKQAIKNVSIKRCQIIYNGSTFDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLR
SARIRYYVKCVQEAVYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPETKEEAP
KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGRLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVPIKQVQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMRIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNG
ETFIGKLADQASKANLMYEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
MVRCARAFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQ
WNSITHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREY
GLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 5079..6701
/gene="ORF2"
CDS 5079..6701
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AZL94854.2"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAIPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQSDQRMRLIAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFSVPVLTLNELTNSRFPVPIDAMYTSPNDSIVVQPQNGRATIDGELLGTT
QLIPSGICSFRGKITTHLSDDRHLWNIQVSNLNGTPFDPTDDVPAPLGMPDFSGQIFG
VVSQRDTGTNPANRAHDAVLATYSAKYTPKLGSVQIGTWDTEDLLERQPVKFTPVGLN
EIGQDKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGHGDPFID
CLVPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKEGFITVSSTENRPVI
VPPNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
gene 6701..7498
/gene="ORF3"
CDS 6701..7498
/gene="ORF3"
/codon_start=1
/product="VP2"
/protein_id="QCD16863.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMISIRQGVLSAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGAPRTTSFSGGFTNSTRARTVEPPKSSPPVQNTLISASRPSSTVSSSSTRST
VVTSSSTAPSVRSSVTRNSPRSASQSVSSASSRTGDWVQNQNRMLEPYLRGSLQTAFV
SPPSSKASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQA"
3'UTR 7499..7577
ORIGIN
1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gcttgcgaca acaacaacga
61 caaggaaaaa tcttcgggtg aaggcttatt tacaaatatg tcttccaccc taaagaaagc
121 cctcggggcc cggcccaaac agcctgcccc gagggacaac tcacaaaagc ccccaagacc
181 acctacgccc gagttggtta agagaatacc ccctcctcca cccaatggcg aagaagaacc
241 agccgttagg tttgaggtta agagtggaat ctctggtctg cctgagctca cgacagttcc
301 ccaactggat gtgaccaaca cggcattcag tgtcccaccg ctgagcttga gagaaaacaa
361 ggaggccaag gaaccgctga ctggggcaat attagagatg tgggatggag agatatacca
421 ctatggtttg tatgtggaga aaggcttagt gttgggtgtg cacaaaccac ctgcagctat
481 aagtatggca agggtggaaa tgacgccgct gtcattatat tggcgtgtgg tgtacacccc
541 ccaatacctc atttcccccg acactctcaa gaggcttaac ggggaggcat tcccttacac
601 tgcctttgac aacaactgtt atgccttttg ttgctgggtg ttagacctta atgactcatg
661 gctcagcaga aggatggtgc aaagaacaac aggcttcttc agaccctacc aagagtggaa
721 cagaaaaccc ctacccacta tggatgactc aaaaattaag aaggtggcaa acattttctt
781 atgttcattg tccacactgt tcaccagacc tataaaagac atcataggga aaatcaaacc
841 actgaatatt ttgaacattc tggcaacgtg tgactggacg ttcgccggaa tcgtagagtc
901 tctaatacta cttgctgaac tctttggagt tttctggaca cccccagatg tgtctgctat
961 gatcgccccc ttacttggcg aatacgagct acaagggccc gaagacatcg ccgttgagct
1021 cgtacctgta gtaatgggag ggattggctt ggtgctagga ttcaccaaag agaaaattgg
1081 caaaatgcta tcctcagcag catcaacgct cagggcttgc aaagaccttg gtgcttatgg
1141 tttagagata ctcaaattgg ttatgaaatg gtttttccca aagaaagaag aggccagtga
1201 actagccatg gtgagggcaa tagaggatgc tgtactggat cttgaagcga tagaaaacaa
1261 ccacatgaca actctgctga aagataaaga cagccttgca acctacatga agacactgga
1321 cctagaggaa gaaaaagcca ggagattgtc cacaaaatct gcatcccctg acatagttgg
1381 aacaatcaat gccctgctgg ctcgaatagc agcggctaga tcactagtcc acagggccaa
1441 agaggaactg tctagcagga tcaggccagt tgttgttatg atttctggca agccagggat
1501 aggcaagact cacctagcca gggaggtggc gaaaaaggtg gcatccactc tcacggggga
1561 tcaaagagtc ggactcatac cgagaaacgg tgtagaccat tgggatgcat acaaaggtga
1621 gagggtcgtg ttgtgggacg actacggcat gagtaacccc atccatgatg ctctgcgcat
1681 acaggaattg gccgacacat gtcccctcac cttaaattgt gacagaattg aaaataaggg
1741 aaaagttttt gatagtgaag tcataataat cacaacaaac ctcgccaatc cagctcccct
1801 tgattatgtc aactttgagg cctgttccag gagaattgac ttcctggtat acgccgaagc
1861 accagaagtg gaaaaggcaa aacgagactt ccctggtcag ccagatatgt ggaaggacgc
1921 cttcaaagcg gacttttcgc atatcaagtt acaacttgcg cctcagggcg gttttgacaa
1981 gaacggcaac accccacatg gtaaaggagt gatgaagacc ctcaccactg gttctctgat
2041 tgcccgtgcg tcaggtttac tacatgagag gatggatgaa tttgaactcc agggccctac
2101 aaccaccact ttcaatttcg accgaaacag aatcaccgcc tttagacaac tggctgcaga
2161 aaacaagtat gggttggtgg acaccatgag agttggcaac caactgaaag gggtgaaaac
2221 catggaagaa ctcaagcaag caatcaagaa tgtgtccatc aagaggtgcc agattatcta
2281 taatggctcc acgttcgacc ttgagtctga tggtaagggc aaggttttag tggaaaaggt
2341 taaaaacacc tccgtccaga ccaacaacga gctggccgga gccctgcatc acctcagaag
2401 tgctcgaatc aggtattatg tcaaatgtgt gcaagaagca gtctactcca tcctacaaat
2461 tgccggcgct gcgttcgtca ccacacgtat tgcacgccgt atgaacatac aagaactttg
2521 gtcaaagcca ccattagacc aaagtgagcc agagaccaaa gaagaggccc ccaagttaga
2581 agatgatgag ttcattatat cctccaaaga catcaaggag gaaggaaaga agggcaaaaa
2641 caagactggc cgtggcaaga aacacactgc attctcgagc aagggcttga gcgatgagga
2701 gtatgacgag tacaagagaa taagagaaga gagaaatgga aagtactcta tagaggagta
2761 tctccaagac agagacaggt actatgagga gctcgccatc gccaaggcca cggaagaaga
2821 cttctgcgag gaagaagaaa ttaaaatccg ccagaggatc ttccgcccta ccagaaaaca
2881 aaggaaggaa gaaagggcca cgctaggact agtgactggt tcagaaatca gaaagagaaa
2941 ccctgatgac ttcaaaccta aagggaggtt gtgggccgac gacaacagaa gtgttgacta
3001 caatgaaaag ttggactttg aggccccccc aagcatatgg tccaggattg tgagctttgg
3061 ttccggttgg ggcttctggg tgtcaccaag cctgttcata acatcaactc atgtaatccc
3121 tgcgggcata acagaggcat ttggagtccc catcaaacaa gtccaagtcc acaaatcagg
3181 tgagttttgc cggttcagat tcccaaaacc aattagacca gatgtgacag gaatgatcct
3241 ggaagagggt gcgccagagg gcactgtggc aaccgtacta atcaaacgcc ccaccggaga
3301 actcatgccc ctcgcagcca gaatgggaac acacgcgacc atgagaattc agggccgcat
3361 ggttggcggg cagatgggca tgttgctcac tggttcaaat gctaagggta tggatttggg
3421 aacaactccc ggtgactgtg gctgcccgta catctacaaa aggggcaatg actatatagt
3481 cattggagtg cacacagcag cagcccgtgg tggaaatact gtcatctgcg ccacacaggg
3541 aagtgagggt gaagcgactc tcgagggtgg agacgacaaa ggaacatact gcggggcacc
3601 cattctgggc cctggaggag caccaaaatt gagcaccaaa accaaatttt ggaggtcatc
3661 aaacacgccc ctcccaccag ggacgtatga gcctgcctat cttggtggtc gtgacccgcg
3721 tgtaaagggc ggaccctctt tgcagcaagt catgagagat cagttgaagc ccttcactga
3781 gcccaggggt aaacctccaa gacctagtgt gttggaggca gctaaacaaa ccatcatcaa
3841 cgtccttgag caaactctgg atcccccaca aaagtggaca tacgcacagg cgtgtgcttc
3901 gcttgataag accacctcta gtgggcaccc ccatcacgcc cgaaagaatg aattctggaa
3961 tggtgagacc tttattggca agttggcaga ccaagcatca aaagcaaacc tgatgtatga
4021 ggaagggaaa cacatgacac cagtgtacac agcagccctc aaggacgagt tggtaaaaac
4081 tgacaaaatc tatgggaaga tcaagaagag gctgctttgg ggctctgact tgtccaccat
4141 ggtccgatgt gctagggcct ttggtgggct catggatgag atgaaggcac actgcatatc
4201 actcccagtc cgagtcggta tgaacatgaa tgaggatggt ccaataatat ttgagaagca
4261 ttccagatat aagtaccatt atgatgcaga ctactcccgc tgggattcaa cacaacaaag
4321 ggctgttcta gcagcggctt tggaaataat ggtcagattc tctgcagaac cacaactggc
4381 acaaacagtc gctgaagacc tgctggcccc tagtgtggta gatgtaggag acttcaaaat
4441 ttcaataaat gaggggcttc cttctggtgt accatgcact tcccagtgga actccatcac
4501 acattggctg ttaactctct gtgctttgtc tgaagtcacc aacctgtccc ctgacatcgt
4561 gcaggcaaat tccatgttct cgttttacgg tgatgacgag attgtcagca ccgatataaa
4621 attagaccct gaaaagttaa ccaccaaatt gagggaatat ggtctgaaac caacccgccc
4681 agataaaact gagggaccac tgattatcag cgaggatttg gacggactca ccttcctccg
4741 gaggacagtt tcccgtgacc cagctggctg gtttggaaag ttagatcaaa gctcaatact
4801 aaggcagatg tactggacca gaggaccaaa ccatgaagac cccaatgaaa caatgatacc
4861 ccactctcaa agacccatac agcttatggc actgcttggt gaggcttccc ttcatggacc
4921 ctctttctac agcaaaatta gtaaattggt cataactgaa ctcaaagaag gtgggatgga
4981 tttttacgtg ccgaggcagg aacctatgtt caggtggatg aggttttctg acttgagcac
5041 gtgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc taatgatggt gcagccggtc tcgtaccaga ggtcaacaac gagacaatgg
5161 cacttgaacc agttgcggga gcttcaattg ctgccccttt aactggtcaa aataatgtaa
5221 tagacccctg gattagatta aattttgtac aagcccccaa tggtgagttc acggtttccc
5281 cccgaaactc gcctggtgaa gttttgttaa atttggagtt agggcctgaa ttgaatccat
5341 acttagccca tttagcaaga atgtataatg gttatgcagg tggggttgag gtgcaggtac
5401 tgctggctgg aaatgcgttt acagcaggca aactggtatt tgcagcaatc ccccctcatt
5461 ttccagtaga taatttgagc cctggtcaga ttactatgtt cccccatgtg attattgatg
5521 ttagaacact tgagcctgtc ttattaccat tacctgatgt taggaataat ttctttcatt
5581 ataatcagca gagtgatcag cgcatgaggc ttattgctat gctttatacc ccccttagat
5641 ctaatggttc aggtgatgat gtctttactg tttcatgtag ggtcctaacc aggccatccc
5701 ctgactttga ttttaattat ttggttcctc caacagttga atctaaaact aaacccttct
5761 cagtcccagt gctgaccctt aatgaactga ccaattctcg atttcctgtc ccgattgatg
5821 ccatgtacac tagccctaat gattcaattg tggtccaacc ccaaaatgga agggcaacca
5881 tagacggtga gttgcttggc accacccaac tcatccccag tggtatctgc tcatttagag
5941 ggaaaatcac aacacacttg tcagatgaca ggcacttgtg gaacatccaa gtctccaatt
6001 tgaatggcac tccgtttgac ccaacagacg acgtgcccgc accattgggt atgccagact
6061 tttctggaca aatatttggg gtagttagtc aaagggacac aggcaccaac cccgcaaaca
6121 gagctcatga cgctgttctt gcaacctaca gcgccaaata cactcccaag ctcggttcag
6181 tccaaattgg aacatgggac accgaggatt tgcttgaaag acagcctgtc aaattcacgc
6241 ccgttggtct caatgaaatt ggacaagaca agcattttga ccaatgggtg ttaccaaatt
6301 attctggtgc cttaggactc aacatgcacc tggctcctgc tgtgtcccca ctctttcctg
6361 gagagagatt attgttcttt agatcatata tacctctaaa gggtggccat ggggacccat
6421 tcattgattg tctagtgcca caagaatgga tacaacactt ttatcaagaa tcagccccag
6481 cacaatcctc ggtggctcta ctgaggtatg tgaatccaga cacaggtcgc actctatttg
6541 aggccaaatt acacaaggaa gggtttatca ccgtctctag tacggaaaat aggcctgtga
6601 ttgtcccccc aaatggttac tttaggtttg actcttgggt taaccaattc tactcacttg
6661 cccccatggg aactggcaat gggcgcagaa ggatgcagta atggctggag ctttcatagc
6721 aggacttgct ggtgacattg tcactaatgg cattggttcg cttgtgaacg ctggagccaa
6781 tgccataaac caaaaagttg attttgaaaa taacaaacag ctacaacaag cttcttttaa
6841 tcatgacaaa gagatgctgc aagcccaaat ccaagccacc aaacagctac aggctgacat
6901 gatttcaatc agacaagggg ttttgtccgc gggcggcttt tcccctactg atgctgcaag
6961 gggcgcagtc aacgcaccaa tgacccaagt gttggactgg aatgggacta gacattgggc
7021 ccctggagcc ccaagaacta ccagtttctc tggtgggttc accaactcca cccgtgccag
7081 aacagttgag ccacccaaaa gttccccccc tgttcaaaat accttgatct ctgcttctag
7141 acctagctct actgtctcat cttcttccac ccgttcgact gtggtcacta gttcctctac
7201 tgccccatct gttagatctt ctgtaactag aaattcacca cgcagtgctt ctcaatctgt
7261 ttcttctgct tcttctcgca ctggtgattg ggtacaaaat caaaatagaa tgctggagcc
7321 atacctgagg gggtcgttgc aaacagcctt cgtgtcgccg ccctccagta aggcctctag
7381 taatggcact gtctcaactg tgccaaaaga agttttggac tcctggacat ctgcgtttaa
7441 cacccgcaga cagccgctct tcgctcacct ccgtcggagg ggggagtcac aagcttagtg
7501 aaaagaatca gattttcttt ttctttcttt tcttcgttga aaatcttatg tcttttaaaa
7561 aaaaaaaaaa aaaaaaa
//