Typing tool
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Typing tool
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Complete norovirus genomes
| GU138163 | GII.21 | |
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| GII.P21 |
ORF1: 1..2070
ORF2: 2051..3670
ORF3: 3670..3846
LOCUS GU138163 3846 bp RNA linear VRL 16-JUL-2019
DEFINITION Norovirus GII isolate
Hu/GII.P21-GII.21/RUS/Novosibirsk/Nsk-701/2005 polyprotein (ORF1)
gene, partial cds; major capsid protein VP1 (ORF2) gene, complete
cds; and minor capsid protein VP2 (ORF3) gene, partial cds.
ACCESSION GU138163
VERSION GU138163.3
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3846)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3846)
AUTHORS Zhirakovskaya,E., Bodnev,S. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (26-OCT-2009) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REFERENCE 3 (bases 1 to 3846)
AUTHORS Zhirakovskaya,E., Bodnev,S. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (29-NOV-2016) Siberian Branch of Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine,
Lavrentiev Ave. 8, Novosibirsk 630090, Russia
REMARK Sequence update by submitter
COMMENT On Jul 16, 2019 this sequence version replaced GU138163.2.
FEATURES Location/Qualifiers
source 1..3846
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P21-GII.21/RUS/Novosibirsk/Nsk-701/2005"
/isolation_source="faeces"
/host="Homo sapiens; sex: F; age: 3 months"
/db_xref="taxon:122929"
/country="Russia: Novosibirsk"
/collection_date="03-Dec-2005"
/note="genotype: GII.P21/GII.21"
gene <1..2070
/gene="ORF1"
CDS <1..2070
/gene="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="APF32448.2"
/translation="PSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVPIKQ
IQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMGTH
ATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAAR
GGNTVICATQGSEGEAMLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSTTPLPPG
TYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQT
IDPPQKWTYAQACASLDKTTSSGHPHHMRKNECWNGETFTGKLADQASKANLMYEEGK
NMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDELKAHCVTL
PVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSTEPHL
AQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSP
DIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLIISEDLDG
LTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLG
EAALHGPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSF
VNEDGVE"
mat_peptide <1..540
/gene="ORF1"
/product="3C-like protease"
mat_peptide 541..2067
/gene="ORF1"
/product="RNA-dependent RNA polymerase"
gene 2051..3670
/gene="ORF2"
CDS 2051..3670
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="ACZ52645.3"
/translation="MKMASNDAAPSNDGATGLVPEINTETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRSNFVQAPNGEFTVSPRNSPGEILMNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVDMLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPAPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKLFTLPILTIGELTNSRFPAPIDQLYTSPNADVVVQPQNGRCTLDGELQGTT
QLLTTAICSYRGITSNPTSDYWDGHLLHLVHPNGATYDPTEDVPAPFGTQDFRGILYG
MLTQNPRTSGDEAANSRGIYISSTSEKFTPKLGTIGLHQVQGDIASNQQSKFTPVGIA
VNGNTPFRQWELPNYSGALTLNTNLAPAVGPNFPGEQILFFRSNVPSVQGGQPIEIDC
LIPQEWVSHFYQESAPSQSDVALVRYVNPDTGRTIFEAKLHRQGFITIAATGSNPVVV
PPNGYFRFDSWVNQFYALAPMGTGNGRRRVQ"
gene 3670..>3846
/gene="ORF3"
CDS 3670..>3846
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="QDM36908.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVTAGANAINQKVEYDFTKQLQSA
SFQHDKDMLQAQINA"
ORIGIN
1 ccaagcattt ggtcacgaat agtcaacttt ggctcagggt ggggcttttg ggtctcgcct
61 agcctcttca taacatcaac ccatgtcatt ccccaaggcg cacaggagtt ctttggagtg
121 cccatcaaac agatacaaat tcataaatca ggtgagttct gccggcttag attcccaaaa
181 ccaatcagga cagatgtcac gggcatgatc ttagaggaag gtgctccaga aggtactgta
241 gccacacttc tcatcaagag accaactggg gaactcatgc ccttggcagc cagaatgggc
301 acccacgcga ccatgaaaat ccagggtcgc actgttggtg ggcagatggg catgctactc
361 acagggtcta acgccaagag catggatttg ggcacaaccc ctggcgattg tggctgtccc
421 tacatctaca agagggggaa cgattacgtg gtcatcggag ttcacaccgc cgctgctcgt
481 ggaggaaata ctgtcatctg tgcaacccaa ggaagcgagg gtgaagccat gttagagggt
541 ggcgataata agggaaccta ctgtggagca ccaatattag gccccggaaa tgcccccaaa
601 ctcagcacca aaaccaaatt ctggaggtct tccaccaccc ccctgccacc cggaacctat
661 gaaccagctt atctgggcgg caaggacccc agagtgaaag gtggcccctc actgcaacag
721 gttatgaggg atcaactaaa accattcact gagcccagag gcaaaccacc caaacctagt
781 gtgctagaag ctgccaagaa gactataatc aatgtgcttg aacagacaat agacccacct
841 caaaaatgga catacgcaca ggcgtgtgca tcactagata agaccacttc cagcggccac
901 cctcaccaca tgcggaagaa cgagtgctgg aacggagaga ctttcacagg aaaactggca
961 gaccaagcat caaaggctaa cctaatgtat gaggaaggaa agaacatgac cccagtatac
1021 acaggagctt tgaaggacga gctagtcaag actgataaga tctatgggaa gatcaaaaag
1081 agactcctgt ggggttcaga cctatcaacc atgatacggt gtgcacgagc cttcggtggg
1141 ctgatggacg agctcaaggc ccattgcgtc acactaccag tcagggttgg catgaatatg
1201 aatgaggatg gacccataat atttgagaaa cattccagat acagatatca ttatgatgca
1261 gactactccc gctgggactc gacacagcaa agagcagtgc tggctgcagc cctggaaata
1321 atggtcaaat tttcaacaga acctcatctg gcccaagtgg ttgcagaaga cctcttgtcc
1381 cccagtgtga tggatgtggg tgatttcaag atatcaatca atgaggggtt accctctggt
1441 gtgccttgca cctcacaatg gaactccatt gcccactggc tcctcacact atgtgcactg
1501 tctgaagtca cagatctgtc ccctgacatc atccaggcaa actccctatt ctccttttat
1561 ggtgatgatg aaatagtgag cacagatatc aaattggacc cagagaaact gacagcaaag
1621 ttgaaggagt acgggctaaa accaacccgt cctgataaaa cagaaggacc cttaattatc
1681 tctgaagact tggacggcct gaccttctta cggagaacgg tgacccgcga tccggctggg
1741 tggtttggca aactggacca aagttcaata ctcagacaga tgtactggac taggggacca
1801 aaccatgagg acccctctga aacaatgata ccacactccc aaagacccat acaactgatg
1861 tcactactgg gtgaagctgc actacatggc ccatcattct atagcaaaat cagcaaattg
1921 gtcatctcag aattgaaaga gggtgggatg gatttttacg tgcccagaca agaaccaatg
1981 tttaggtgga tgaggttctc agatttgagc acgtgggagg gcgatcgcaa tctggctccc
2041 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctacagg
2101 tctcgtacca gagatcaaca ctgagacctt gcctctcgag cccgtggccg gagcggcaat
2161 tgctgcccct gttacgggcc aaaataatat aattgatccc tggattagaa gcaattttgt
2221 gcaggcgcct aatggtgagt ttacagtctc ccctagaaat tcccctggtg aaattttgat
2281 gaatttggag ttagggccag atcttaatcc atacttggct cacctttcaa gaatgtacaa
2341 tggttatgct ggaggtgtag aagtgcaagt gctcctagct gggaatgcgt tcacggcagg
2401 aaaaatcctt tttgcagcag tccccccaaa tttccccgtt gatatgctta gccctgctca
2461 aatcacaatg cttccccatt taattgtaga tgtcagaact ttggagccta ttatgatccc
2521 tctgcccgat gttaggaatg tgttctatca ctttaataac cagcctgctc caagaatgag
2581 attggttgcc atgctctaca cccctttaag atccaatggg tccggtgatg atgtattcac
2641 tgtctcctgc agggtgctaa ccagacctac tccggacttt gagtttacat acttagtccc
2701 cccctcggta gagtccaaaa ccaagctttt caccctaccc atcctaacaa ttggagagtt
2761 gacaaattct agattcccag ccccgatcga tcagttgtac acttcaccca acgctgatgt
2821 agttgttcaa ccccaaaatg gccggtgcac actggacggt gagctacaag gcacaacaca
2881 acttttgaca acagcaatat gctcatacag gggcataaca tcaaacccca ctagtgacta
2941 ctgggatggt cacctcctgc acctggtcca ccccaatggg gcaacatatg acccgaccga
3001 ggacgtgcca gctccttttg gcacgcagga ctttcggggc attctgtatg ggatgttgac
3061 tcaaaacccc cgaacctccg gggacgaagc cgccaactcc cgtgggatct acatctcatc
3121 caccagtgaa aagttcactc caaaattggg tacaattggc ttgcaccaag tgcaaggcga
3181 catagccagc aaccaacagt caaaattcac gccagtaggg atagcagtga atggcaacac
3241 tcctttcaga cagtgggaac tcccaaacta ctctggtgct ctcaccctca acacaaacct
3301 tgcaccagcg gttgggccca acttccctgg ggagcaaatc cttttcttca ggtcaaatgt
3361 tccaagtgtt caaggtggcc aacctataga gattgattgc ctgatcccac aagaatgggt
3421 ctcccatttc tatcaagaat cagccccttc tcagagtgat gtggccttgg tcaggtatgt
3481 caaccctgac acagggcgca caatctttga ggccaaattg cataggcagg gatttatcac
3541 catagcggcc actggaagca accccgtggt cgtgcctccc aatggatatt tcagatttga
3601 ttcctgggtc aaccagtttt atgcactcgc ccccatggga actgggaatg ggcgcagaag
3661 ggttcagtaa tggctggagc tttcatagca ggattggcag gtgacatgct caccaacact
3721 gttggttccc tggtcacagc gggggctaac gctataaacc aaaaagttga atatgacttc
3781 accaaacaac tgcaaagtgc ctccttccag catgacaagg acatgcttca agcccagatc
3841 aacgca
//