Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| GU017903 | GII.14 | |
|
|---|---|---|---|
| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6689
ORF3: 6689..7483
LOCUS GU017903 7529 bp RNA linear VRL 13-FEB-2013
DEFINITION Norovirus Hu/GII.14/8533/Maizuru/2008/JPN, complete genome.
ACCESSION GU017903
VERSION GU017903.2
KEYWORDS .
SOURCE Norovirus Hu/GII.14/8533/Maizuru/2008/JPN
ORGANISM Norovirus Hu/GII.14/8533/Maizuru/2008/JPN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7529)
AUTHORS Chan-It,W., Thongprachum,A., Okitsu,S., Nishimura,S., Kikuta,H.,
Baba,T., Yamamoto,A., Sugita,K., Hashira,S., Tajima,T.,
Mizuguchi,M. and Ushijima,H.
TITLE Detection and genetic characterization of norovirus infections in
children with acute gastroenteritis in Japan, 2007-2009
JOURNAL Clin. Lab. 57 (3-4), 213-220 (2011)
PUBMED 21500729
REFERENCE 2 (bases 1 to 7529)
AUTHORS Chanit,W.
TITLE Direct Submission
JOURNAL Submitted (29-SEP-2009) Developmental Medical Sciences, Institute
of International Health, The University of Tokyo, Hongo, Bunkyo,
Tokyo 113-0033, Japan
REFERENCE 3 (bases 1 to 7529)
AUTHORS Chanit,W.
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2010) Developmental Medical Sciences, Institute
of International Health, The University of Tokyo, Hongo, Bunkyo,
Tokyo 113-0033, Japan
REMARK Sequence update by submitter
COMMENT On Feb 2, 2010 this sequence version replaced GU017903.1.
FEATURES Location/Qualifiers
source 1..7529
/organism="Norovirus Hu/GII.14/8533/Maizuru/2008/JPN"
/mol_type="genomic RNA"
/isolate="Hu/GII.14/8553/Maizuru/2008/JPN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:683855"
/country="Japan"
/collection_date="2008"
/note="genotype: GII.14"
CDS 5..5098
/note="contains helicase, VPg, 3Cpro, and RdRp"
/codon_start=1
/product="polyprotein"
/protein_id="ACX81344.2"
/translation="MKMASNRAPHAFGSQNSVNDSINATPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
VQNEHENTPYTVPPLSEREHRSATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKRVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKFALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKIEDNASQTANEVQSAL
LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQDVNESEK
EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
TDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVERGPSLQQVMRDQLRPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFIISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 5079..6689
/note="ORF2"
/codon_start=1
/product="capsid protein"
/protein_id="ACX81345.2"
/translation="MKMASNDATPSDDGAAGLVPEINSEVMALEPVAGASLAAPVVGQ
QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMSPHVIVDVRQLKPVLLPMPD
IKNDFNHYNQKNNTKLRLVAMLYTPLRANNSGDDVCTESCRVLTRPSPDFQFTFLVPP
TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
ILQSVSICNFKGTMQAKLNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAMLYGV
ASQRSSIDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD
QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
QEWVEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN
GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
CDS 6689..7483
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ADC34935.1"
/translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG
SRYWAPNSMKTTGYSGTFASQGIKSSPHLSNQIPSVVKSTKPLPSISSSSSVYSSPST
APSQSTQSTTLSAGTGSSRSNTVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT
PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta accgcgctcc gcatgccttt ggcagtcaaa actctgtcaa
61 tgacagtatc aacgccaccc cttccaataa ggaagaggtt ggtgcatttt ccaacatcaa
121 agttggattt aagaaaatgc tgggtgctgt acccaagggc actaaagcac ccagcagtgg
181 tcaacattgt cccacagtta agatcgggcc caaaacatta acaattcccc ctgagccccc
241 aaatggtgaa gacactgtgc agtttgatgc aaagtcggaa actataattg ggctgccgga
301 cttgacaacg gtgcaaaacg aacatgaaaa caccccatac accgtccccc cattaagtga
361 gagggagcac agatcggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg
421 tgaattttac cactactccg tgtatgtcag cgatggcaaa gctctggggg tccacaaacc
481 accggctgct ataagcctcg cgacgataga gctcaccccc atatctctct actggagacc
541 cgtttacacc cccaactatt tggtctcccc agacacattg aaaggcctcg ctggtgagaa
601 gttcccctac acggccttta gtaacaattg ttataacttt tgttgttggg tgcttgagct
661 caacgacacg tggctcaaca gaagatgcat ttccagaacc accggcttct tcaaacctta
721 tcagtcttgg aacaggaagc ccctcccaac cgttgatgat ggaaagatca aaagggtggc
781 caacgcgatc ctctgtgcac tcggctcgct gttctcaaag ccaatcaaag atttgttagg
841 caaacttaag ccattgaacc tgctacactt gcttgcgtca tgcgattgga cgtttgcagg
901 tatagtggag acagtcatct taatggcaga acttttcaat atcttctgga ccccgccaga
961 tgtctctaat tttatagcct ccctgatagg tgattttgaa ttacaagggc ctgaggacct
1021 ggctgtggaa ctcgttcctg tggttatggg tggcatagga atggttctcg gcttcaccgc
1081 tgagaagata ggccgtatgc tgtcatccgc cgcatcaaca ctgcgggcat gcaaagacct
1141 agggaactat gcccttgaca ttctcaaatt ggtcatgaag tggttcttcc caaagaagga
1201 agagaaagct gagatggaaa ccttgagggc gatcgaggat gccgtactag atatggaagc
1261 tatagggaat aaccatctca cgaccctcct caaggacaaa gacagcctca cggcttttat
1321 gaagaccctg gacctggaag aggaaaaagc aagaaaactg tccactaagt catcttcacc
1381 ggacatcgtc ggcaccatta atgccatact agctaggatt gctgctgcca gatcccttct
1441 acataaggcc aaagaagaga tgtttagtag gatcagacca gtggtcgtta tgatatcagg
1501 cagacctggc attggcaaaa cccacatggc aagacatttg gctaagagca tcgccaacac
1561 catgagtggc gaccagagag tcgggctcgt cccacgcaac ggtgtcgacc actgggatgc
1621 ctacagagga gagagggtgg tcttgtggga cgactacggt atggggagcc ctgttaaaga
1681 tgccttaaca ctacaggagt tggccgacac ctgtccagtc actttaaatt gtgataggat
1741 tgagaacaag gggaagatgt tcgacagtga tgtcatcata atcacaacca acctggtcaa
1801 ccccgcgccc ctcgattatg tgaacttcga ggcgtgttcc aggagagttg acttcttggt
1861 ctatgcagag tcaccagaga ttgaaaaggt caagagggac ttccctggcc aacctgacat
1921 gtggaaagac cattttaagc cagacttttc tcacatcaag ctaactctag ccccccaggg
1981 cgggtttgac aagaatggta acactccaca cggtaaggga accatgcggt ccctgaccca
2041 ggggtccctg actgcaagag ttgcgggcct tgtccatgag aggagagatg agttccaact
2101 ccaaggaaac gacctccaaa catacaattt tgacaccaac agagtctccg cattcagaaa
2161 actggctgca gataacaagt atggtatcat ggaaacgatg agagtaggtg cggcactcaa
2221 aaatgtaaag accttggaag atctaaaatt tgcattaagg gatgtgaaat tcaatgagtg
2281 tgaaataatt tacaagaact ctaagtatcg agtctcttcc aacggtaaag gctcagtttc
2341 tgttgacaaa attgaggaca atgcatccca gaccgcaaac gaggtacaat cagcacttct
2401 caggctcaga caagcgaggg ccagatatta catcagctgc ttccaagacc tcgtctacac
2461 tctcatacag gttgccggag catcattcgt tgtcaacaga atttccaaaa ggttctgctg
2521 ggaaaggtgg gtcaaaccaa ccgagaccca ggatgtgaat gagtccgaga aggaagtggc
2581 tcaaggtaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggtaaaaa
2641 caagaaagga aggggcaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
2701 gtatgacgag ttcaagagaa tcagggaaga aaggaatgga aagtactcca ttgaggaata
2761 cctgcaagac cgggaccgct attatgaaga agtggcggtt gcccgggcaa cagaggagga
2821 cttctgtgaa gaggaagagg ccaaaataag acaaagaatt ttccgcccga caaagaaaca
2881 aaggaaggag gaaaggggtg tacttggctt agtcaccggc acagacatca gaaagaggag
2941 accagacgat tttcaaccaa aaggcaatct gtgggcagat gacaccagga gtgtggacta
3001 caatgagaga cttgattttg aagcgccccc aagtgtctgg tcaagaatag tcccattagg
3061 cactggttgg ggtttctggg tttcatccaa ccttctaatc acaacaacac acgtcctgcc
3121 taaaggggtt aaggaactct ttggagttga aatcaaacag atccaagttc acaagtctgg
3181 agagttttgc aggtttagat tcccaagacc aatcaggcca gatgtcacag ggctcgtgtt
3241 ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaagagac ctacaggtga
3301 gatgatcccc ttggcagtga ggatgggcac acacgcatcc atgaaaatac aaggcaggac
3361 cgttggtggc cagatgggaa tgcttctaac aggagcaaat gcgaagaaca tggatcttgg
3421 caccggccct ggtgactgcg gttgtcccta catctacaaa cgcggcaacg acatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg aggtaacact gtcatatgtg ccactcaagg
3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctc ggtacctact gtggcgcccc
3601 aattctgggc cctggtaagg cacctaaact cagcacgaag accaagtttt ggcgctcatc
3661 accagatgcc ttgccacctg gcacatatga acctgcttac ctgggaggca aagaccccag
3721 agtggaaaga ggaccttccc tgcagcaagt catgagagac cagttgagac ccttcacaga
3781 acccagggga aaaccgccta gacctgcagt cttagaagaa gccaagaaga cagtgatgaa
3841 tgttttagaa caaaccattg accctgcaaa accgtggtcc tactcgcaag catgtgcctc
3901 actggacaaa accacttcta gtggtagccc ccatcatgta aagaaaaatg accactggaa
3961 tggggagtcc ttcactggtc cccttgcaga tcaggcatcc aaagccaacc tcatgtatga
4021 acaggctaaa catgtgcagc ccgtgtacac ggccgcgctc aaagatgagc ttgttaagac
4081 tgacaagatc tacaaaaaga taaagaagag gctcctatgg ggatcggacc ttggaacaat
4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gctgtatagc
4201 tcttccatgc agggtaggaa tgaacatgaa tgaagatggc cctatcatat ttgacaaaca
4261 ttctaagtat aggtaccact atgatgctga ctattctagg tgggactcaa cccagcaaag
4321 gagcattctt tctgccgcta tggaagtgat ggtgcgattt tctgctgaac cagaattggc
4381 acaagtggtt gcagaggacc ttttggcgcc tagtcagctt gatgttggtg attttatcat
4441 ctcagttcag gagggcctgc catcaggagt cccatgtaca tcacaatgga actcaatagc
4501 acactggatc ctaactttga gtgcgatggc agaagtgtca ggtctctcac cagatgttgt
4561 ccaagctcac tcctgctttt cattttatgg ggacgatgag atcgtcagca ctgacatcaa
4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggcctggtcc ccacccgacc
4681 tgataaaact gaaggtcccc tcgtcataac tgaagacctc accggcctga cgttccttcg
4741 taggtcgatt gcacgggacc cagctggatg gtttggaaaa ttggaccaag attcaatcct
4801 caggcaacta tactggacaa gggggcctaa ccatgagaac ccgtacgaga gcatggtccc
4861 tcattcccag cgggccacac agcttatggc tcttcttggt gaggcttcac tgcatggtcc
4921 ccaattttac aagaaagtca gcaaaatggt tattaatgag attaagagtg gtggtctgga
4981 attttatgtg cccagacagg aggccatgtt caggtggatg agattctctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
5101 ctactccatc tgatgatggt gcagccggcc tcgtaccaga gatcaacagt gaggttatgg
5161 ctcttgaacc cgtcgctggg gcctcccttg cagcccccgt agtcggccaa cagaatataa
5221 ttgatccctg gattagaaat aattttgtac aagcccctgc tggtgaattc acagtttccc
5281 ctagaaactc tcctggagaa cttctacttg atttggaatt gggtcctgaa cttaatccct
5341 atcttgcaca tttggccagg atgtacaatg ggcatgcagg aggaatggaa gtgcagatag
5401 tactggctgg gaatgcgttc acagctggta agatcctatt tgctgccatc ccgcctagct
5461 tcccctatga aaatttgtca cccgctcaat tgactatgag cccccatgtg atagtggatg
5521 tgaggcaatt aaaaccagtg cttctgccaa tgccagatat aaaaaatgat ttcaaccact
5581 ataaccagaa aaataatacc aaacttaggc ttgtagctat gctttatacc cctctgaggg
5641 ctaacaactc aggtgatgac gtgtgcacgg agtcttgccg cgttttaaca cgtccttctc
5701 cagatttcca gttcaccttt ctggtcccac ctacagttga gtctaaaact aagaatttca
5761 cccttcccgt tcttagagtc tcagagatga caaactcaag gttccccgtt gttttagacc
5821 aaatgtatac aagcaggaat gaaaacatca ttgtccaacc ccaaaacggc aggtgcacga
5881 ctgacggtga gctgcttggc actaccatct tgcagtctgt gtctatttgc aactttaaag
5941 gaacaatgca ggcaaagctg aatgaagaac cacgatacca actacaactc accaacttgg
6001 atgggtcacc catagatcca acagatgata tgcctgcccc tcttggcaca ccagacttcc
6061 aggccatgtt atatggcgtt gcaagccaac gctcttccat agacaatgcc accagggcac
6121 atgatgcaca gattgacact gcgggtgaca cattcgcccc gaaaattggc caggttcgtt
6181 ttaaatcaag ctctaatgat tttgacctac atgaccctac aaaattcaca cctattggtg
6241 tcaatgtgga tgatcagcac ccttttagac agtggtccct gccaaactat ggtggtcacc
6301 ttgccctgaa caaccattta gcccccgctg tgacaccact ctttcctggc gagcagattt
6361 tgttcttcag gtcatacatt ccgagcgccg gaggccacac agacggtgct atggactgct
6421 tgctgcccca agagtgggta gagcacttct accaggaagc ggctccttcc caatctgaca
6481 ttgcactggt aaggttcatc aaccctgata caggaagagt gctctttgaa gctaaattgc
6541 ataaacaagg tttcctcaca attgcagcat ctggagatca ccctattgtg atgcccacta
6601 atggttactt taggtttgaa gcttgggtta accctttcta cactctcgcc cccgtgggaa
6661 ctgggtctgg gcgcaggagg attcaataat ggctggagct ttccttgcag gcttggcagg
6721 tgacgttgtg acttccagct tgggctcact tgtgggcgct ggagccaacg ccatcaacca
6781 gaaagtggag tatgacttca acagacagct ccaggaggca tcttttagac atgataagga
6841 tatgctcaaa gcccaggttg cagcaacagc aggccttcaa caggccatga tagacatcaa
6901 gcgggaggca ttgaccgcag gcggcttttc ccccgctgat gctgcaaggg gtgcagttag
6961 agcgcctatg acacagattc ttgactggaa tggttctagg tattgggccc ctaactccat
7021 gaagacaact ggctattcag gtacatttgc ttcccaaggc attaaaagtt ccccccacct
7081 gtctaatcaa attccaagtg ttgttaaatc taccaaacct ttaccatcta tatctagttc
7141 ctctagtgta tatagttctc cttctactgc cccttcacaa tcaacacaat caacaacgct
7201 gtctgcagga acagggtcct ccagatctaa caccgtgtcc acaaagacct ctacactgtc
7261 gaggacaagt gactgggtta gaggtcaaaa tgagatgctt ggcccgttca tgagtggtgc
7321 actccaaact gcttatgtca caccaccatc gagcagggcc tcatcacaag ggacggtctc
7381 gaccgtaccc aaggctgttt tggactcctg gactcccatg ttcaacaccc acaggcagcc
7441 tctcttcgcc cacttgcgta ggcgagggga gtcacagatt tagtgaaaag gatgattagg
7501 gtttcttcct ttccccttct tattctttt
//