Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| GQ856476 | GII.16 | |
|
|---|---|---|---|
| GII.P16 |
ORF1: 1..787
ORF2: 774..2390
ORF3: 2390..3187
LOCUS GQ856476 3246 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/55171/2008/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856476
VERSION GQ856476.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/55171/2008/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/55171/2008/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3246)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3246)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3246
/organism="Norovirus Hu/GII.4/Beijing/55171/2008/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679307"
/country="China: Beijing"
/collection_date="2008"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00655.1"
/translation="QQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKIS
INEGLPSGVPCTSQWNSITHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDI
KLDPEKLTTKLREYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVSRDPAGWFGKLDQS
SILRQMYWTRGPNHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 774..2390
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00656.1"
/translation="MASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQNN
VIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLSRMYNGYAGGVE
VQVLLAGNAFTAGKLVFAAIPPHFPVDNLSPGQITMFPHVIIDVRTLEPVLLPLPDVR
NNFFHYNQQSDQRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPPTV
ESKTKPFSVPVLTLNELTNSRFPVPIDAMYTSPNDSIVVQPQNGRATIDGELLGTTQL
IPSGICSFRGKITTHLADDRHLWNIQVSNLNGTPFDPTDDVPAPLGMPDFSGQIFGVV
SQRDTGTNPANRAHDAVLATYSAKYTPKLGSVQIGTWDTEDLLERQPVKFTPVGLNEI
GQDKHFDQWVLPNYSGALGLNMHLAPAVSPLFPGERLLFFRSYIPLKGGHGDPFIDCL
VPQEWIQHFYQESAPAQSSVALLRYVNPDTGRTLFEAKLHKGGFITVSSTENRPVIVP
PNGYFRFDSWVNQFYSLAPMGTGNGRRRMQ"
CDS 2390..3187
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00657.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
FFNHDKEMLQAQIQATKQLQADMISIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGASRTTSFSGGFTNSTRARTVEPLKNPPPVQNTLTSVSRPSSIASSSSTRST
VVTSSSTAPSTRSSMTRNSPRSVSQSVSSASSRTSDWVQNQNRMLEPYLRGSLQTAFV
SPPSSKASSDGAVSTVPKEILDSWTSAFNTRRQPLFAHLRRRGESQA"
ORIGIN
1 acaacagagg gctgttctag cagcggcctt ggaaataatg gtcagattct ctgcagaacc
61 acaactggca caaacagttg ctgaggattt gttggccccc agtgtggtgg atgtcggaga
121 cttcaaaatt tcaataaatg agggactccc ttctggtgta ccatgcactt cccagtggaa
181 ctccatcaca cactggttgc taactctctg tgctttgtct gaagtcacca atctgtctcc
241 tgacatcgtg caggcaaatt ccatgttctc attctacggt gatgacgaga tcgtcagcac
301 cgatataaaa ttggatcctg aaaagttaac caccaagttg agggagtatg gtctaaaacc
361 aactcgccca gacaaaaccg aggggcccct gatcatcagt gaggatttga atggactcac
421 cttcctccgg aggacggttt ctcgtgaccc agctggttgg tttggaaagt tagatcaaag
481 ctcaatacta aggcagatgt attggaccag aggaccaaac catgaagacc ccaatgagac
541 aatgataccc cactctcaaa gacccataca actcatggca ctgctcggtg aggcctccct
601 tcacggaccc tctttctaca gtaagattag taaattggtc ataactgaac tcaaagaagg
661 tgggatggac ttttacgtgc caagacagga acctatgttc aggtggatga ggttttctga
721 cttgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
781 cgaatgacgc cgctccatct aatgatggtg cagccggtct cgtaccagag gtcaacaacg
841 agacaatggc acttgagcca gttgcgggag cttcaatcgc cgcccctcta actggtcaaa
901 acaatgtaat agacccctgg attagattaa attttgtaca agcccctaac ggtgagttca
961 cggtttcccc ccgaaactcg cctggtgaaa ttttgttaaa tttggagtta gggcctgaat
1021 tgaatccata tttagcccat ttatcaagaa tgtataatgg ttatgcaggt ggggttgagg
1081 tgcaggtgct gctggctgga aatgcgttta cagcgggcaa attggtattc gcagcaatcc
1141 ccccccattt cccagtagat aatttgagcc ctggtcagat tactatgttt ccccatgtga
1201 ttattgatgt taggacactt gaacctgttt tattaccatt acctgatgtt aggaataatt
1261 tcttccatta taatcagcag agtgatcagc gtatgagact tgttgctatg ctttatactc
1321 ctcttagatc taatggttcg ggtgatgatg tcttcactgt gtcatgcagg gttttaacca
1381 ggccatcccc tgattttgat tttaactatt tggttccccc aacagttgaa tctaaaacta
1441 aacccttctc agttccagtg ctgaccctca atgagctgac caactctcgc tttcccgtcc
1501 cgattgatgc catgtacacc agccctaacg attcaattgt ggtccaacct cagaatggga
1561 gggcaaccat agatggtgag ttgcttggca ccactcaact catccccagt ggtatctgct
1621 catttagagg gaaaattaca acacatttgg cagatgatag gcacttgtgg aatatccaag
1681 tctccaactt gaatggcact ccgtttgacc caacggacga cgtgcctgca ccattgggca
1741 tgccagactt ttctgggcaa atatttgggg tggttagcca aagggacaca ggcaccaacc
1801 ccgcaaacag ggctcatgat gctgtccttg caacctacag tgctaaatat actcctaagc
1861 tcggatcagt ccaaattgga acttgggaca ccgaggattt acttgaaaga cagcctgtta
1921 aatttacacc cgttggtctc aatgaaattg gacaagacaa gcactttgac caatgggtct
1981 tgccaaatta ttctggtgcc ctaggactca atatgcacct ggctcctgct gtgtccccac
2041 tcttcccagg ggagaggctg ctgttcttta gatcgtatat tcctctaaaa ggtggccatg
2101 gggacccatt tattgattgt cttgtgcctc aagagtggat acaacatttt tatcaagagt
2161 cagccccagc gcaatcttcg gtggctctgc tgaggtatgt gaatccagac acaggtcgca
2221 ccctgtttga agccaaatta cacaagggag ggtttatcac cgtctctagt acggaaaaca
2281 ggcctgtgat tgtccccccg aatggctact ttaggtttga ttcttgggtt aaccaattct
2341 attcattagc ccccatggga actggcaatg ggcgcagaag gatgcagtaa tggctggagc
2401 ttttatagca ggacttgctg gtgacattgt caccaacggt attggttcac ttgtgaatgc
2461 tggagccaat gctataaacc aaaaagttga ttttgaaaac aacaaacagc tacaacaggc
2521 tttttttaat catgacaaag agatgctgca agcccagatt caagccacca aacaactaca
2581 ggctgacatg atttcaatca gacaaggggt tttgaccgcg ggcggcttct cccctactga
2641 tgctgcaagg ggtgcagtca acgcaccaat gacccaagtg ttggattgga atggaactag
2701 acattgggcc cctggagctt caaggactac cagcttctct ggtgggttca ccaactccac
2761 ccgtgccaga acagttgagc ctcttaagaa ccccccccct gttcaaaaca ctttaacttc
2821 tgtttccaga cctagttcca ttgcttcatc ctcttccacc cgttcgactg tggttactag
2881 ttcttctact gctccttcta ctaggtcttc catgactagg aattcacccc gcagtgtttc
2941 tcaatctgtt tcttctgctt cttctcgcac cagtgattgg gtgcaaaatc aaaatagaat
3001 gctggagcca tacctgagag ggtcgttgca aacagctttt gtgtcgccgc cctccagtaa
3061 ggcctctagt gatggcgctg tctcaactgt gccaaaagaa attttggact cctggacatc
3121 tgcgtttaac acccgcagac agccgctttt cgctcacctc cgccggaggg gggagtcaca
3181 agcttagtga aaagattatg gttttctttc tatctctttt ctcttgttga aaatcttatg
3241 tctttt
//