Human calicivirus
Typing tool

Complete norovirus genomes

GQ856475  GI.4
 GI.P4

Length: 3,119 | 3 CDS 

ORF1: 1..784
ORF2: 768..2402
ORF3: 2402..3028

LOCUS       GQ856475                3119 bp    RNA     linear   VRL 05-OCT-2011
DEFINITION  Norovirus Hu/GII.4/Beijing/55169/2008/CHN RNA-dependent RNA
            polymerase gene, partial cds; and capsid and minor structural
            protein genes, complete cds.
ACCESSION   GQ856475
VERSION     GQ856475.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Beijing/55169/2008/CHN
  ORGANISM  Norovirus Hu/GII.4/Beijing/55169/2008/CHN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1  (bases 1 to 3119)
  AUTHORS   Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
            Tan,M., Jiang,T. and Duan,Z.J.
  TITLE     Genetic diversity of noroviruses in Chinese adults: Potential
            recombination hotspots and GII-4/Den Haag-specific mutations at a
            putative epitope
  JOURNAL   Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
   PUBMED   21803173
REFERENCE   2  (bases 1 to 3119)
  AUTHORS   Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
            Jiang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2009) Department of Viral Diarrhea, National
            Institute for Viral Disease Control and Prevention, China CDC,
            Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES             Location/Qualifiers
     source          1..3119
                     /organism="Norovirus Hu/GII.4/Beijing/55169/2008/CHN"
                     /mol_type="genomic RNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:679306"
                     /geo_loc_name="China: Beijing"
                     /collection_date="2008"
     CDS             <1..784
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ACY00652.1"
                     /translation="QNRQIMTESFAIMCRLTASPELASVVAKDLLAPSEMDVGDYIIR
                     VKEGLPSGFPCTSQVNSINHWLITLCAMSEVTGLSPDVIQSQSYFSFYGDDEIVSTDI
                     DFDPARLTQVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLRRTISKDAAGFQGRLDRG
                     SIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLHGEKFYRKISSKVIQEIK
                     TGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
     CDS             768..2402
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid"
                     /protein_id="ACY00653.1"
                     /translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA
                     TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG
                     WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV
                     PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL
                     FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ
                     PLGTTPVSVSQLCKFRGRITSGQKVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE
                     MSKIPNSSTQSNPIVVNSVKPNSQQFVPHLSSITLDDNVSSGGDYIGTIQWTSPPSDS
                     GGANTNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL
                     LPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ
                     LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR"
     CDS             2402..3028
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACY00654.1"
                     /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLILQQN
                     SFNHDKEMLGYQVEMSNKLLAKNLNTRYSLLQAGGLSPSDAARAVAGAPVTRLVDWGG
                     VRVAAPQSSATTLRSGNFMAVPLPAQPKQKPLASEGYSNPAYDPMQRTASWVQSQNSS
                     RTWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR"
ORIGIN      
        1 acaaaataga cagatcatga ctgagtcctt tgcaatcatg tgccgcctca cggcgtcacc
       61 tgagttggcc tctgttgtag ccaaagatct acttgcaccc tcagaaatgg atgttggtga
      121 ctacatcatc cgtgtgaagg aaggcttgcc atcagggttc ccttgcacgt cacaggtgaa
      181 tagtattaat cattggttaa tcacattgtg tgctatgtct gaagtcacag gcttatcacc
      241 cgatgtcata caatcccagt cttacttttc tttctatggt gatgatgaaa tagtctcaac
      301 agatattgat tttgaccccg cccgcctcac tcaagtgctt aaagaatatg gattgagacc
      361 cacccgacca gacaagtcag aaggacccat catacttaga agacaggtgg atggccttgt
      421 tttcttaagg aggacaatct caaaagatgc tgcgggcttc caggggaggc tagacagggg
      481 ttcaattgaa aggcagctct ggtggactcg aggtcctaac catgatgacc ccagtgagac
      541 tctaatccca cacccccaga ggaaagttca gcttatatcc ctccttggtg aggcttccct
      601 ccatggtgag aaattttaca ggaaaatctc cagtaaagtt atacaggaga taaagactgg
      661 tggtttggag atgtatgtgc caggctggca ggccatgttc cgctggatgc gcttccatga
      721 cctcggattg tggacaggag atcgcaatct cctgcccgaa tttgtaaatg atgatggcgt
      781 ctaaggacgc tacaccaagc gcagatggcg ccactggcgc cggccagctg gtaccggagg
      841 ttaatacagc tgaccctata cccattgacc ctgtggctgg ctcctctaca gcacttgcca
      901 ctgcaggcca agttaatttg attgatccct ggataatcaa taattttgtg caagcccccc
      961 agggtgaatt cacaatatcc ccaaacaata cccccggtga tgtgcttttt gatttgcagt
     1021 taggacctca tttaaaccct ttcctctccc atctctctca gatgtataat ggctgggtgg
     1081 gcaacatgcg agtgcgtgtt gtcttggctg gtaatgcttt cacggctggg aaggttataa
     1141 tttgttgtgt cccccctggt tttcaatctc gtactctttc catagctcag gctactttat
     1201 tcccccacgt cattgctgat gttaggaccc ttgaccctgt agaagtgcct cttgaagatg
     1261 tcaggaatgt gttgtatcat aataatgaca cccaacctac catgcgcctc ctttgcatgc
     1321 tgtacactcc tctccgcacc gggggagcgt ctggtgggac tgattctttc gtggtagctg
     1381 ggcgtgtact tacttgccca ggccctgact ttaacttctt attcttggtc cctcctacag
     1441 tcgaacaaaa gactcgccct ttcactgtac ctaatatccc tttgaagtat ctgtctaact
     1501 ccagaatccc aaaccccatt gaaggtatgt cattgtcacc tgaccagact caaaatgtcc
     1561 aattccagaa tggcaggtgc acaatcgacg gtcaacccct tgggactaca cctgtctcgg
     1621 ttagccagtt atgtaagttt aggggtagga ttacatctgg acagaaggtg ctcaatttga
     1681 cagagttgga tggttcacct tttatggcct ttgctgctcc tgcccctgcg ggcttcccag
     1741 atcttgggtc ctgtgattgg catattgaga tgagtaaaat cccaaattct agcacccaga
     1801 gtaatccaat agtggtcaat tctgtcaagc ccaatagtca acagtttgtc cctcacttgt
     1861 caagcatcac ccttgatgac aatgtttcta gtgggggtga ttatatcggt actatacaat
     1921 ggacctctcc tccttctgat tctggcggag ccaatacaaa cttttggaaa atccctgact
     1981 atgggtctag cttggctgaa gcttcacagc tggcccccgc tgtctatcca cctggtttca
     2041 atgaagtgat tgtgtatttt atggcatcta tacctggccc caatcaatct gggtccccta
     2101 acttggtgcc atgcctactc ccccaggaat atataacaca tttcattagt gagcaggctc
     2161 ccattcaggg tgaggctgcc ttactccatt atgtggaccc agacaccaat cgtaatttag
     2221 gtgagtttaa attgtatcct ggtggttatt taacctgtgt tcctaatagt tctagtactg
     2281 gacctcaaca gcttcctctt gatggtgttt ttgtctttgc ttcttgggtc tctagatttt
     2341 atcaattaaa gcctgtggga acagccggac cggctagagg taggcttggt gtccgtagat
     2401 aatggcccaa gccattatag gagccattgc cgcctctgcg gccggtagcg ccctgggtgc
     2461 tggcatccag gccggtgctg aagctgcgtt acaggcacag agatatcaac aagatttgat
     2521 tttgcagcaa aattctttta atcatgacaa agaaatgtta ggttatcaag tggaaatgtc
     2581 caataagttg ctagctaaga atcttaacac ccgctattct cttctccagg cgggtggcct
     2641 ctcaccctct gatgcggcta gggctgtggc cggggcccct gtcaccaggc tggtcgactg
     2701 gggtggagtg cgtgttgcag caccacaatc atctgccacc acattgagat ctggcaattt
     2761 catggcagtg ccactcccag ctcagccaaa gcagaagccc cttgccagtg agggttattc
     2821 caaccccgct tatgacccta tgcagcgtac ggcttcttgg gttcaatctc aaaattccag
     2881 tcggacttgg tctccttacc ataggcaggc ccttcagact gtgtgggtga ccccccctgg
     2941 ctctacctct tcttcttctg tttctactgc ccctcggggg tactttaata cagataggtt
     3001 gcctctgttc gcaaacttga ggcgttaatg ttgtaataag attagtgagc atcctattca
     3061 aattttggct ttgtataatt tggttatatt tggcttttaa ttttgatttg gttgatgtt
//