Typing tool
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Complete norovirus genomes
GQ856475 | GI.4 | ||
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GI.P4 |
ORF1: 1..784 ORF2: 768..2402 ORF3: 2402..3028LOCUS GQ856475 3119 bp RNA linear VRL 05-OCT-2011 DEFINITION Norovirus Hu/GII.4/Beijing/55169/2008/CHN RNA-dependent RNA polymerase gene, partial cds; and capsid and minor structural protein genes, complete cds. ACCESSION GQ856475 VERSION GQ856475.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Beijing/55169/2008/CHN ORGANISM Norovirus Hu/GII.4/Beijing/55169/2008/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3119) AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N., Tan,M., Jiang,T. and Duan,Z.J. TITLE Genetic diversity of noroviruses in Chinese adults: Potential recombination hotspots and GII-4/Den Haag-specific mutations at a putative epitope JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011) PUBMED 21803173 REFERENCE 2 (bases 1 to 3119) AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and Jiang,T. TITLE Direct Submission JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National Institute for Viral Disease Control and Prevention, China CDC, Ying-Xin St., Xuan-Wu District, Beijing 100052, China FEATURES Location/Qualifiers source 1..3119 /organism="Norovirus Hu/GII.4/Beijing/55169/2008/CHN" /mol_type="genomic RNA" /host="Homo sapiens" /db_xref="taxon:679306" /country="China: Beijing" /collection_date="2008" CDS <1..784 /note="ORF1" /codon_start=2 /product="RNA-dependent RNA polymerase" /protein_id="ACY00652.1" /translation="QNRQIMTESFAIMCRLTASPELASVVAKDLLAPSEMDVGDYIIR VKEGLPSGFPCTSQVNSINHWLITLCAMSEVTGLSPDVIQSQSYFSFYGDDEIVSTDI DFDPARLTQVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLRRTISKDAAGFQGRLDRG SIERQLWWTRGPNHDDPSETLIPHPQRKVQLISLLGEASLHGEKFYRKISSKVIQEIK TGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV" CDS 768..2402 /note="ORF2" /codon_start=1 /product="capsid" /protein_id="ACY00653.1" /translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ PLGTTPVSVSQLCKFRGRITSGQKVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE MSKIPNSSTQSNPIVVNSVKPNSQQFVPHLSSITLDDNVSSGGDYIGTIQWTSPPSDS GGANTNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL LPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR" CDS 2402..3028 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="ACY00654.1" /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLILQQN SFNHDKEMLGYQVEMSNKLLAKNLNTRYSLLQAGGLSPSDAARAVAGAPVTRLVDWGG VRVAAPQSSATTLRSGNFMAVPLPAQPKQKPLASEGYSNPAYDPMQRTASWVQSQNSS RTWSPYHRQALQTVWVTPPGSTSSSSVSTAPRGYFNTDRLPLFANLRR" ORIGIN 1 acaaaataga cagatcatga ctgagtcctt tgcaatcatg tgccgcctca cggcgtcacc 61 tgagttggcc tctgttgtag ccaaagatct acttgcaccc tcagaaatgg atgttggtga 121 ctacatcatc cgtgtgaagg aaggcttgcc atcagggttc ccttgcacgt cacaggtgaa 181 tagtattaat cattggttaa tcacattgtg tgctatgtct gaagtcacag gcttatcacc 241 cgatgtcata caatcccagt cttacttttc tttctatggt gatgatgaaa tagtctcaac 301 agatattgat tttgaccccg cccgcctcac tcaagtgctt aaagaatatg gattgagacc 361 cacccgacca gacaagtcag aaggacccat catacttaga agacaggtgg atggccttgt 421 tttcttaagg aggacaatct caaaagatgc tgcgggcttc caggggaggc tagacagggg 481 ttcaattgaa aggcagctct ggtggactcg aggtcctaac catgatgacc ccagtgagac 541 tctaatccca cacccccaga ggaaagttca gcttatatcc ctccttggtg aggcttccct 601 ccatggtgag aaattttaca ggaaaatctc cagtaaagtt atacaggaga taaagactgg 661 tggtttggag atgtatgtgc caggctggca ggccatgttc cgctggatgc gcttccatga 721 cctcggattg tggacaggag atcgcaatct cctgcccgaa tttgtaaatg atgatggcgt 781 ctaaggacgc tacaccaagc gcagatggcg ccactggcgc cggccagctg gtaccggagg 841 ttaatacagc tgaccctata cccattgacc ctgtggctgg ctcctctaca gcacttgcca 901 ctgcaggcca agttaatttg attgatccct ggataatcaa taattttgtg caagcccccc 961 agggtgaatt cacaatatcc ccaaacaata cccccggtga tgtgcttttt gatttgcagt 1021 taggacctca tttaaaccct ttcctctccc atctctctca gatgtataat ggctgggtgg 1081 gcaacatgcg agtgcgtgtt gtcttggctg gtaatgcttt cacggctggg aaggttataa 1141 tttgttgtgt cccccctggt tttcaatctc gtactctttc catagctcag gctactttat 1201 tcccccacgt cattgctgat gttaggaccc ttgaccctgt agaagtgcct cttgaagatg 1261 tcaggaatgt gttgtatcat aataatgaca cccaacctac catgcgcctc ctttgcatgc 1321 tgtacactcc tctccgcacc gggggagcgt ctggtgggac tgattctttc gtggtagctg 1381 ggcgtgtact tacttgccca ggccctgact ttaacttctt attcttggtc cctcctacag 1441 tcgaacaaaa gactcgccct ttcactgtac ctaatatccc tttgaagtat ctgtctaact 1501 ccagaatccc aaaccccatt gaaggtatgt cattgtcacc tgaccagact caaaatgtcc 1561 aattccagaa tggcaggtgc acaatcgacg gtcaacccct tgggactaca cctgtctcgg 1621 ttagccagtt atgtaagttt aggggtagga ttacatctgg acagaaggtg ctcaatttga 1681 cagagttgga tggttcacct tttatggcct ttgctgctcc tgcccctgcg ggcttcccag 1741 atcttgggtc ctgtgattgg catattgaga tgagtaaaat cccaaattct agcacccaga 1801 gtaatccaat agtggtcaat tctgtcaagc ccaatagtca acagtttgtc cctcacttgt 1861 caagcatcac ccttgatgac aatgtttcta gtgggggtga ttatatcggt actatacaat 1921 ggacctctcc tccttctgat tctggcggag ccaatacaaa cttttggaaa atccctgact 1981 atgggtctag cttggctgaa gcttcacagc tggcccccgc tgtctatcca cctggtttca 2041 atgaagtgat tgtgtatttt atggcatcta tacctggccc caatcaatct gggtccccta 2101 acttggtgcc atgcctactc ccccaggaat atataacaca tttcattagt gagcaggctc 2161 ccattcaggg tgaggctgcc ttactccatt atgtggaccc agacaccaat cgtaatttag 2221 gtgagtttaa attgtatcct ggtggttatt taacctgtgt tcctaatagt tctagtactg 2281 gacctcaaca gcttcctctt gatggtgttt ttgtctttgc ttcttgggtc tctagatttt 2341 atcaattaaa gcctgtggga acagccggac cggctagagg taggcttggt gtccgtagat 2401 aatggcccaa gccattatag gagccattgc cgcctctgcg gccggtagcg ccctgggtgc 2461 tggcatccag gccggtgctg aagctgcgtt acaggcacag agatatcaac aagatttgat 2521 tttgcagcaa aattctttta atcatgacaa agaaatgtta ggttatcaag tggaaatgtc 2581 caataagttg ctagctaaga atcttaacac ccgctattct cttctccagg cgggtggcct 2641 ctcaccctct gatgcggcta gggctgtggc cggggcccct gtcaccaggc tggtcgactg 2701 gggtggagtg cgtgttgcag caccacaatc atctgccacc acattgagat ctggcaattt 2761 catggcagtg ccactcccag ctcagccaaa gcagaagccc cttgccagtg agggttattc 2821 caaccccgct tatgacccta tgcagcgtac ggcttcttgg gttcaatctc aaaattccag 2881 tcggacttgg tctccttacc ataggcaggc ccttcagact gtgtgggtga ccccccctgg 2941 ctctacctct tcttcttctg tttctactgc ccctcggggg tactttaata cagataggtt 3001 gcctctgttc gcaaacttga ggcgttaatg ttgtaataag attagtgagc atcctattca 3061 aattttggct ttgtataatt tggttatatt tggcttttaa ttttgatttg gttgatgtt //