Typing tool
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Typing tool
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Complete norovirus genomes
| GQ856474 | GIX.1 | |
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| GII.P15 |
ORF1: 1..801
ORF2: 782..2449
ORF3: 2449..3180
LOCUS GQ856474 3249 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/55161/2008/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856474
VERSION GQ856474.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/55161/2008/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/55161/2008/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3249)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3249)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3249
/organism="Norovirus Hu/GII.4/Beijing/55161/2008/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679304"
/country="China: Beijing"
/collection_date="2008"
CDS <1..801
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00649.1"
/translation="RWDSTQQRCILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVG
DFVVSVQEGLPSGVPCTSQWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEI
VSTDINLDPTKLTLKLREYGLVPTRPDKTGGPLVITEDLHGLTFLRRHITRDPAGWFG
KLDQDSILRQLYWTRGPNHENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMV
INEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
CDS 782..2449
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00650.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRDAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
LPSVESKLKQFTLPNLQPNEMTNSRFPTGIIQLYTSPNTNLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRARFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
CDS 2449..3180
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00651.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSIHRPIPNVVHKSDGPTHQTGSTTGSISSLSTSSTRV
PSSTSSSSSTSRTRDWVSEQQSLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVKKRGQSQV"
ORIGIN
1 aggtgggact caacacaaca aagatgtatc ctatctgctg ccatggaagt tatggtgaag
61 ttctcagctg aaccggaatt ggcacaggtg gtggctgaag acttgctcgc cccaagccaa
121 ctcgacgtgg gcgattttgt ggtgtcagtc caagaaggcc ttccctcagg tgttccatgt
181 acctcccagt ggaactccat agcacattgg atcattaccc ttagtgccat ggcagaagtt
241 tctggcctct ccccagatgt gatccaagcc cactcatgct tctctttcta cggtgatgat
301 gaaatagtta gcacagacat caacctggac ccaacaaagc taaccttaaa gctcagggaa
361 tatggattgg tccccaccag accagacaaa actgggggcc cactagtcat cacagaggat
421 ctccacggat tgaccttcct acgcagacac atcacacggg atcctgctgg gtggtttggc
481 aaattagatc aggactcaat cttaaggcag ctctactgga ctaggggacc caaccatgag
541 aacccctatg agtgcatggt cccacattca cagcgcgcaa ctcagttaat ggcgctgttg
601 ggtgaggcat cgttgcacgg tccccagttc tacaagaaag tcagcaagat ggttatcaat
661 gaaattaaga gtggtggtct ggaattttac gtgcccagac aggaggccat gttcaggtgg
721 atgagattct ctgacctcag cacgtgggag ggcgatcgca atctggctcc cgacggtgtg
781 aatgaggatg gcgtcgagtg acgcgcccgt ttctggcacc gatggtgcgg caggactcgt
841 tccagagagt caacaagaag tcttgccttt agagcccgtc gcgggagttc agctggctgc
901 tcccgtagca gggcaaagta atataattga cccctggatt agaatgaatt ttgtgcaagc
961 cccggccggt gagttcactg tgtcccctcg ggacgcaccg ggtgaggtac ttattgattt
1021 agaattagga ccagaattaa atccctatct taatcacctt gcaagaatgt ataatgggta
1081 tgtaggagga atggaggtgg aagttgtcct tgccgggaat gcgttcacgg cgggtaagat
1141 cttattcgca gctgtgcccc ccagcttccc aacccatggc atctctgcag cacaggcaac
1201 tatgttgcca catgtgattg tggatgtcag gcagctggag cctgttcggc tccctctccc
1261 tgatgtcagg aatgtgatgt tccatttctg tcaagagaat aaggagccgc gcatgagaat
1321 tgtggcaata ttgtacaccc ccctccgtgc taacggtgcg ggtgacgatg ttttcactgt
1381 ctcatgtcgt gtgctaacaa gaccctcacc agattttgat tttattttct tagtcctccc
1441 ctctgtagag agtaagttga aacagtttac cctcccaaat ctgcagccaa atgagatgac
1501 caattcgaga ttccccactg gtattataca gctttacacc agtccaaaca ccaatttggt
1561 tgtccagttc caaaatggca ggtgtctact tgatggcaca cttcttggta ccacccctgt
1621 cagagctgct gacatctgca gttttagagg ggtcacatca actgaagttg atgcaactga
1681 cagtcccaga gtggcagggt cacatagaat tatggtgcag cttaaggagc cagatggaga
1741 ggagttttca cccacaggtc ccaaccctgc ccctgttggc actccagact ttcaagcagc
1801 catatttggc acccttagtc aaagaaatac tggcggggct gggcagaact ccaacagagc
1861 ccgcttcgca tacttctata ctagaaaccc tacattcgca ccaggcatag ggacagttgt
1921 attttctttt gacaccactg attttcagaa tcgccaacct accaaattct ctccttctgg
1981 tgtgtttgat gatgactctt ctgaaccttt caatcaattt tctctaccat attataatgg
2041 atcactcggt gcagtggatg ctgggaaact ggctccgcct gtggcaccca attatccagg
2101 tgagcagatt ctttatttca gagggaatat acccttcaaa ggtgggtatg gagagggtga
2161 aattgatagc ttgcttcccc aggaatggat cacccacttt tatgcagagc aggcccccac
2221 acaaggtgac gcagccctgc tgcgctacta caaccctgac actggcagag tcctctttga
2281 gtgcaaactc caccgcgagg gattcatcac aatcaattac acaggatcca atgctcttgc
2341 tgtaccagtc aatggagtct tcaggtttga gggctgggtt aacaaattct acacactgac
2401 ccccatggga aatggcaatg gccgcagggg tagaagaagg gagttataat ggctggagct
2461 ttcttcgcag gtcttgcttc tgatgttctc ggcagcggtt tgtcttctct tatcggtgcc
2521 ggtgccaatg ccataaatca aaaggttgaa tatgattaca acaggcactt gcaatcagct
2581 tcttttcaac atgacaagga tatgctcaac tcacaggtgg aagccacaaa gcacttacag
2641 agggagatga tggccatcaa ggaaggcatg ctgcttaagg gtgggttttc ccccactgac
2701 gcagcaagag gggctgtcaa cgcccctatg acacaaatct tggattggaa tggcaccaga
2761 tactgggccc caggggcaat gaaaactacg gcctattcag gccggtttgt tagccaatcc
2821 atccacaggc ctattcccaa tgttgtgcac aagagtgatg gacccacaca ccaaactggg
2881 tcaaccacag gatctatctc ttctctttct acatcatcca cccgtgtccc atcatccacg
2941 tcctcatcta gcagcacttc tagaacaaga gactgggtgt ctgaacagca aagcctcagt
3001 cctttcatga gaggctctct tcacaccgca tatgtgactc ctccatcaag ctctgcctct
3061 tcagtaagct ctgtttctac agtcccacac tatgttttag attcatggac cccctctttc
3121 aataccaagc atttacctct gtttgcccat gttaagaaaa ggggacaatc tcaagtttaa
3181 tctaccactc atggtttgat tgatttgttt tgtaattagt gaaatgttga ttcttctaat
3241 tcggcattt
//