Typing tool
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Typing tool
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Complete norovirus genomes
| GQ856473 | GI.3 | |
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| GI.P10 |
ORF1: 1..784
ORF2: 768..2402
ORF3: 2402..3046
LOCUS GQ856473 3173 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/55042/2007/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856473
VERSION GQ856473.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/55042/2007/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/55042/2007/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3173)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3173)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3173
/organism="Norovirus Hu/GII.4/Beijing/55042/2007/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679297"
/country="China: Beijing"
/collection_date="2007"
CDS <1..784
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00646.1"
/translation="QNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS
VKDGLPSGFPCTSQVNSINHWIPTLCALSEVTGLSPDVLQSQSYFSFYGDDEIVSTDV
EFDPIKLTQVLKEYGLKPTRPDKTDGPIVVKQQVDGLVFLRRTISKDAIGYQGRLDRN
SIERQLWWTRGPNHDDPFETLVPHPQRKVQLISLLGEAALHGEKFYRKIASRVIQEVK
EGGLEIYIPGWQAMFRWMRFHDLSMWTGDRDLLPDYVNDDGV"
CDS 768..2402
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00647.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFAAQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNSPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPNLPLNTLSNSRVPSLINAMMISRDHGQMVQFQNGRVTLDGQ
LQGTTPTSLSQLCKIRGKVFHASGGNGLNLTELDGSAYHAFESPAPIGFPDIGECDWH
MNATATSNFTGSNDEYQILVKQESTFAPHLGHVQADSLSADANTDLMVSLSWISPVSD
QHRRDVDPWVIPRYGSSLTEAAQLAPPIYPPGFGEAIVFFMSDFPVVSGVNGMRIPCT
LPQEYVAHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKMYPEGFMTCVPNSSGSGPQT
LPINGVLTFVSWVSRFYQLKPVGTAGPARRLGIRRS"
CDS 2402..3046
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00648.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
SFKHDKEMIGLQVGASTALLQNNLNTRYNLLTQAGMSTADAARAVVGAPTTRVVDWNG
TRIAAPMSSATTLRSGGFMTVPTLYRGSKTNSQLSSGFSNANYMPSSASRTSEWVSSQ
NSSRSSLGPYHPNALQTAWVTPPGSTSTSSLSSASTAPRYFNTERLPLFANLRK"
ORIGIN
1 tcaaaatagg gagatcatga tggagtcatt caacattatg tgcaagctca ctgccaaccc
61 ttccctggcc gcggtagtgg cacaagactt actttctcct tctgaaatgg atgttggaga
121 ttatgtgatc agtgtgaaag acggtctgcc atcaggcttc ccatgcacct cacaagtcaa
181 cagcataaat cattggatcc ccactctatg cgcattgtca gaagtcactg ggctttcccc
241 agacgtgttg cagtcacaat catacttttc cttctatggg gatgacgaga tagtctccac
301 agatgttgaa tttgacccaa ttaaattgac acaagtgctc aaagaatatg gtctaaaacc
361 cacaaggccc gacaagactg atggtcccat agtagtcaag caacaagtgg atggccttgt
421 ctttcttcgg cgaaccatct caaaagacgc cattggttac cagggtcgtc ttgaccgaaa
481 ttccattgag agacagcttt ggtggacgcg tggacccaac cacgatgacc catttgagac
541 cttggtccca cacccgcaga gaaaagtcca actaatatct ctgcttggtg aggctgctct
601 ccatggtgag aaattctaca ggaagatagc aagcagagtc atccaagaag ttaaggaggg
661 ggggttagaa atctacattc ctgggtggca ggccatgttc cgctggatgc gcttccatga
721 tctgagcatg tggacagggg atcgcgatct cctgcccgat tatgtaaatg atgatggcgt
781 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggccagctg gtaccagagg
841 caaatacagc tgagcctatt tcaatggaac cagtagctgg ggctgcgaca gcagccgcaa
901 ctgctggaca agtaaatatg attgacccct ggataatgaa taattatgta caagcccctc
961 aaggagagtt caccatttcg cccaacaaca ctcctggtga cattttattt gacctacaat
1021 tgggtccaca cctcaaccct ttcttgtccc atttagctca aatgtacaat ggttgggtcg
1081 gaaacatgaa agtgaaggtg cttttggcag gcaatgcctt tacagctggg aagattataa
1141 ttagttgtat accccctggc tttgccgcac aaaatatttc catagctcaa gctacaatgt
1201 tcccccatgt cattgcagat gtcagagtgc ttgaacctat agaggttccc cttgaagatg
1261 tcagaaatgt gctcttccat aataatgata attcccctac tatgagattg gtctgcatgt
1321 tatatacacc tcttagggct agtggtagct catcaggtac tgacccattt gtcattgcag
1381 gaagggtcct gacttgcccg agcccggatt ttagcttctt atttcttgtc cccccgaatg
1441 tagaacagaa aaccaaaccc ttctctgtgc ccaacttgcc actaaataca ctctctaact
1501 caagggttcc ttcacttatc aatgctatga tgatttctag agaccatggg cagatggtgc
1561 agttccagaa tggcagggtc acgcttgatg gtcagttgca gggtacaacc cctacttcac
1621 tgagccagct atgtaagatt agagggaaag tcttccatgc tagtggaggc aatggtctga
1681 acctcactga attggatggc tctgcttatc atgcctttga aagtcctgct ccaattgggt
1741 tcccagacat tggtgagtgt gattggcaca tgaacgccac agctactagc aatttcactg
1801 ggtccaatga tgagtatcaa attcttgtca aacaagagtc aacatttgcc ccccaccttg
1861 gtcatgtgca ggctgacagc ctatcggcag acgctaacac cgaccttatg gtgtctttga
1921 gttggatatc ccctgtttca gaccaacaca ggcgtgacgt ggacccatgg gtcataccac
1981 gttatggttc ttccctcact gaagctgccc aattggcccc gcccatttac cctcctggat
2041 ttggtgaagc tatagtgttc tttatgtctg attttccagt ggtgtcgggt gttaatggta
2101 tgaggattcc atgcacacta cctcaggaat atgtggctca ttttgtaaac gagcaggctc
2161 ccactcgagg tgaggcagct cttttgcatt atgttgatcc tgacactcac agaaacctag
2221 gtgagtttaa aatgtatcct gagggcttta tgacctgtgt gcccaattcc agtggatctg
2281 gtcctcagac cttacctatt aatggagtcc ttacttttgt ctcttgggtt tctcgtttct
2341 atcaattaaa gcctgtggga actgctggtc cagcacgtag gcttggcatc agaagatcat
2401 aatggctcaa gccatctttg gagctattgc cgccactgct gctggtagcg ccgtcggggc
2461 tggcattcag gctggaactg aggctgctct ccagcatcag cgttttcaac aggatcttac
2521 cttacaaagt aattccttta aacatgataa agaaatgatt ggacttcagg taggtgcctc
2581 tacagcatta ctgcaaaaca atttgaacac tcggtataac ttattaacac aggcaggcat
2641 gtcaacagcc gatgcagcta gggctgtggt tggtgcgcca accacgcgag tggtagactg
2701 gaatggcacc agaattgcag cccctatgtc ctccgccacc actttgagat caggtggctt
2761 catgacggta ccaacacttt atagaggctc taagaccaat tcacaattgt caagtggctt
2821 ttctaatgct aattacatgc ctagtagtgc atctagaact tctgaatggg tttcttctca
2881 aaactcttct agatcttcct tgggacctta ccacccaaat gcattgcaaa ctgcttgggt
2941 tacccctcca gggtcaacct ccacctcttc tttatcatct gcttctacgg caccaagata
3001 ttttaataca gaaaggcttc ctttattcgc aaatttaagg aagtaaattt ttgtaatatg
3061 aattagtggg catcatattc aattggaatt ttaaaattat tgattggttc atatgaatta
3121 gtagatatca tattcaattg gaattttgag attattgatt ggcttttgat gtt
//