Human calicivirus
Typing tool

Complete norovirus genomes

GQ856472  GI.3
 GI.P13

Length: 3,132 | 3 CDS 

ORF1: 1..784
ORF2: 768..2402
ORF3: 2402..3049

LOCUS       GQ856472                3132 bp    RNA     linear   VRL 05-OCT-2011
DEFINITION  Norovirus Hu/GII.4/Beijing/54660/2007/CHN RNA-dependent RNA
            polymerase gene, partial cds; and capsid and minor structural
            protein genes, complete cds.
ACCESSION   GQ856472
VERSION     GQ856472.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Beijing/54660/2007/CHN
  ORGANISM  Norovirus Hu/GII.4/Beijing/54660/2007/CHN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3132)
  AUTHORS   Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
            Tan,M., Jiang,T. and Duan,Z.J.
  TITLE     Genetic diversity of noroviruses in Chinese adults: Potential
            recombination hotspots and GII-4/Den Haag-specific mutations at a
            putative epitope
  JOURNAL   Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
   PUBMED   21803173
REFERENCE   2  (bases 1 to 3132)
  AUTHORS   Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
            Jiang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2009) Department of Viral Diarrhea, National
            Institute for Viral Disease Control and Prevention, China CDC,
            Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES             Location/Qualifiers
     source          1..3132
                     /organism="Norovirus Hu/GII.4/Beijing/54660/2007/CHN"
                     /mol_type="genomic RNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:679291"
                     /country="China: Beijing"
                     /collection_date="2007"
     CDS             <1..784
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ACY00643.1"
                     /translation="QNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS
                     VKDGLPSGFPCTSQVNSINHWIYTLCALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDI
                     EFDSNRLTQVLKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRN
                     SIERQLWWTRGPNHDDPFETLVPHTQRKVQQISLLGEAALHGEKFYRKIASRVIQEVK
                     EGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
     CDS             768..2402
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid"
                     /protein_id="ACY00645.1"
                     /translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMDPVAGAATAVA
                     TAGQINMIDPWIMSNFVQAPQGEFTVSPNNTPGDVLFDLQLGPQLNPFLAHLAQMYNG
                     WVGNMRVKVLLAGNAFTAGKIIISCIPPGFTSQNISIAQMTMFPHVIADVRVLEPIEI
                     PLEDVRNVLFHTNDNRPTMRLVCMLYTPLRANGSSSGTDPFVIAGRVLTCPDSNFSFL
                     FLVPPNVEQKTRPFSVPNIPLNTLSNSRVPSLIKSMTISRDQNQIIQFQNGRVTLDGQ
                     LQGTTPTSVSQLCKIRGTTYHATGGSGINLTELNGEPYHAFESPAPIGFPDLGGCDWH
                     LTATPTQAFNDGAKVVRLSVTQGAAFAPHLGTIHYTTTDTDYNPNTSIICTLDWLSQT
                     TGQSNVDPWQIPTYGSALTEAAQLAPPIFPPGFGETLVFFLSDFPISNGKNGLSVPCT
                     LPQEFVTHFVNEQAPIRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNTSGGGPQT
                     LPINGVFVFVSWVSRFYQLKPVGTAGAARRLGIRRS"
     CDS             2402..3049
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACY00644.1"
                     /translation="MAQAVLGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
                     TFKHDKEMLAMQVEASTSLLQNSLNTRYNLLTQAGLTSADAARAVAGAPVTRVVDWNG
                     TRIAAPLSTATTLRSGGFMSIPVMYRGAKTEQQKLTGFSNPNYETGSSVSRTSQWVSS
                     QNSMRSSVAPFHPDALRTTWVTPPGSSSTSTVSSASSIPRFFNTERLPLFANNKR"
ORIGIN      
        1 ccaaaacagg gagatcatga tggaatcctt taacatcatg tgcaaactta ccgctaaccc
       61 ctccctagcc gcagtggtgg cacaggacct gctctcccct tctgaaatgg atgtcggtga
      121 ttatgtgatc agtgtcaaag atggtctacc atctggtttt ccatgcacct cacaagtaaa
      181 cagcatcaac cattggatct acactttgtg tgccctgtca gaggtcactg gtttagctcc
      241 tgatgtaata cagtcacagt cttacttttc attttatggt gatgatgaaa tagtttcaac
      301 agatattgaa tttgactcaa acagactaac acaggtatta aaagagtatg gcctaaaacc
      361 cacaagacct gataaaactg acggcccaat cattgtaagg caacaggttg atggcttggt
      421 tttcctccgg cgcaccatct cgaaggatgc catcgggtac cagggtcggc ttgaccgtaa
      481 ttccattgaa agacagctct ggtggacccg ggggcccaac cacgatgacc catttgaaac
      541 cttagtccca cacacacaga ggaaggtcca acagatatcc ttgctgggtg aagctgcact
      601 ccatggtgag aaattctata gaaagatagc cagtagggtg atccaggagg tcaaagaagg
      661 aggattggaa atttacatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
      721 tttgagcttg tggacaggag accgcgatct cttgcccgat tatgtaaatg atgatggcgt
      781 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gtaccagagg
      841 caaatacagc tgaacctata tcaatggacc cagtggctgg agccgcaaca gcggttgcaa
      901 ctgctggaca aattaatatg attgacccct ggataatgag taattttgtg caagccccac
      961 aaggggaatt cactgtctca cctaacaaca cccctggaga tgttctgttt gatttacaat
     1021 tgggacctca actaaatcca ttcctcgctc atctagccca gatgtataat ggctgggtag
     1081 gcaatatgcg tgtgaaggtg ctgcttgctg gcaacgcttt tactgcaggg aaaataataa
     1141 ttagctgcat acccccaggt tttacctccc aaaatatttc tattgcccaa atgacaatgt
     1201 ttcctcatgt tatcgctgac gtgagggttt tggaacctat agaaataccc cttgaggatg
     1261 tgaggaatgt gctgtttcac accaatgaca accgcccaac aatgaggctt gtgtgcatgt
     1321 tgtatactcc cttgcgagcc aatggcagtt cttctggcac ggaccctttt gtcatagctg
     1381 gccgggttct cacctgccca gattcaaatt ttagtttcct atttttagta ccccctaatg
     1441 tagaacaaaa gactagacct tttagtgttc ccaatatacc tctgaataca ttgtcaaatt
     1501 caagggtgcc atcattgatt aagtctatga ccatctctag agatcagaat caaataattc
     1561 aatttcaaaa tggtagggtt acattggatg gtcagctaca gggcaccaca cccacatcag
     1621 tgagccagtt gtgtaaaatt agaggcacta cataccacgc aactggaggt agtgggataa
     1681 atttaacaga gttgaatggt gaaccatacc atgcctttga aagccccgcc ccgatagggt
     1741 ttccagatct tggtggttgc gattggcatc tcacagcaac ccccacgcag gctttcaacg
     1801 atggagcaaa ggttgtgcgc ctgtcagtca cccagggcgc agcctttgca ccacacttgg
     1861 gtaccataca ttacaccact actgacactg attacaaccc caacactagc ataatttgca
     1921 cactagattg gctgtcccaa actactggtc agagtaatgt tgacccttgg cagataccaa
     1981 cttatgggtc ggctttaact gaagccgctc agttggcgcc tcctatcttt ccccctgggt
     2041 ttggagaaac attggttttc tttctatcag acttccctat ttccaatggc aagaacggac
     2101 tcagtgtacc gtgcactctt ccacaggaat ttgtcaccca ttttgtgaat gaacaggccc
     2161 caatcagagg agaggccgcc ctcttgcatt atgttgaccc tgacactcac cgtaatcttg
     2221 gagagtttaa attgtatcca gaaggtttta tgacctgtgt tcctaatact agtggtggtg
     2281 gtccccaaac tttgcctatc aatggagtct ttgtctttgt ttcttgggtc tctcgctttt
     2341 accagttgaa gcctgtggga acggccggtg cggctcgtag gcttggaatc aggaggtcat
     2401 aatggctcaa gccgtcttag gagcaattgc agccacagcc gctggcagcg cagttggggc
     2461 aggcattcag gctggcactg aagctgcact gcaacatcag cgctttcaac aagacttgac
     2521 tctacaaagt aatacattca aacatgataa ggagatgttg gctatgcagg tggaggcttc
     2581 tacttctcta ttacagaata gcttgaatac tcgctataac ttgttgaccc aggcaggtct
     2641 gacttctgca gacgccgcta gagcagtggc gggggccccc gtcactcgtg tggtggactg
     2701 gaatggcact cgtatcgccg ctccactatc aactgccacc actctccgct ctggaggatt
     2761 tatgtctata ccggtcatgt ataggggtgc aaaaacagaa cagcagaaat tgacaggctt
     2821 ctcaaacccc aactacgaga ctggttcatc tgtgtcgcgc acatcgcaat gggtttcctc
     2881 acaaaactca atgcggtcta gcgtggcacc attccaccca gatgcactca ggacaacttg
     2941 ggtcacaccg cctggttcgt cttctacatc tactgtttct tcagcttcat ctatacctag
     3001 attctttaat actgaaagat tacccttgtt cgcaaacaat aagaggtgat ttttgtaata
     3061 tgaaaatgtg ggcatcatat tcaattggat aagttttaat tggtttttat tatttaattg
     3121 gcatttgatg tt
//