Human calicivirus
Typing tool

Complete norovirus genomes

GQ856470  GI.3
 GI.P13

Length: 3,84 | 3 CDS 

ORF1: 1..784
ORF2: 768..2399
ORF3: 2399..3046

LOCUS       GQ856470                3084 bp    RNA     linear   VRL 05-OCT-2011
DEFINITION  Norovirus Hu/GII.4/Beijing/54108/2007/CHN RNA-dependent RNA
            polymerase gene, partial cds; and capsid and minor structural
            protein genes, complete cds.
ACCESSION   GQ856470
VERSION     GQ856470.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Beijing/54108/2007/CHN
  ORGANISM  Norovirus Hu/GII.4/Beijing/54108/2007/CHN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3084)
  AUTHORS   Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
            Tan,M., Jiang,T. and Duan,Z.J.
  TITLE     Genetic diversity of noroviruses in Chinese adults: Potential
            recombination hotspots and GII-4/Den Haag-specific mutations at a
            putative epitope
  JOURNAL   Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
   PUBMED   21803173
REFERENCE   2  (bases 1 to 3084)
  AUTHORS   Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
            Jiang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2009) Department of Viral Diarrhea, National
            Institute for Viral Disease Control and Prevention, China CDC,
            Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES             Location/Qualifiers
     source          1..3084
                     /organism="Norovirus Hu/GII.4/Beijing/54108/2007/CHN"
                     /mol_type="genomic RNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:679285"
                     /country="China: Beijing"
                     /collection_date="2007"
     CDS             <1..784
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ACY00637.1"
                     /translation="QNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS
                     VKDGLPSGFPCTSQVNSINHWIYTLCALSEITGLAPDVIQSQSYFPFYGDDEIVSTDI
                     EFDPNRLTQVLKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRN
                     SIERQLWWTRGPNHEDPFETLVPHTQRKVQLISLLGEAALHGEKFYRKIASRVIQEVK
                     EGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYENDDGV"
     CDS             768..2399
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid"
                     /protein_id="ACY00638.1"
                     /translation="MMMASKDAPTNMDGTSGAGQLVPEVSTAEPISMEPVAGAATAAA
                     TAGQVNMIDPWIMSNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
                     WVGNMKVRVLLAGNAFTAGKIIISCVPPGFAAQNVSIAQATMFPHVIADVRVLEPIEV
                     PLEDVRNVLFHNNDSTPTMRLICMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFNFL
                     FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKSMMVSQDHGQMVQFQNGRVTLDGQ
                     LQGTTPTSASQLCKIRGTVYHATGGQGLNLTEIDGTPYHAFESPAPIGFPDLGECDWH
                     INASPANAFTDGSIIHRIDVVQDPTFAPHLGTIHYTNANYDANVSLICSLEWLSPPSG
                     GALKANPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGSDGLSVPCTI
                     PQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQTL
                     PINGVFTFISWVSRFYQLKPVGTTGPVRRLGIRRS"
     CDS             2399..3046
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACY00639.1"
                     /translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
                     TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARMVVGAPATRVVDWNG
                     TRISAPRSTATTLRSGGFMTIPTLYKGKQQQKAPAEIGLSNPNYGSSVSSRVADWVSS
                     QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN      
        1 acaaaacagg gagatcatga tggagtcttt caacattatg tgcaaactta ccgccaaccc
       61 ttccctagct gcagtggtgg cacaggacct gctctcccct tctgaaatgg atgtcggtga
      121 ttacgtgatc agtgttaaag atggtctgcc atctggtttt ccatgcacct cacaagtaaa
      181 cagcatcaac cattggatct acactttgtg tgccttatct gaaatcactg gcttggcccc
      241 tgatgtgata cagtcacaat cttactttcc attctatggt gatgatgaga tagtttcaac
      301 agacattgaa tttgacccaa atagattaac acaagtgtta aaagagtatg gcttaaaacc
      361 cacaagacct gacaagactg atggtccaat cattgtaagg caacaggtag atggcttggt
      421 tttcctccga cgcaccatct cgaaggatgc tattgggtac cagggacggc tagaccgtaa
      481 ttccattgaa agacagctct ggtggacccg tgggcccaac cacgaagatc catttgaaac
      541 cttggtccca catacacaga ggaaggtcca attgatatcc ttactaggtg aagctgcact
      601 ccatggtgag aaattctaca gaaagatagc cagcagagtg atccaggagg ttaaagaagg
      661 aggactggaa atttatattc ctgggtggca ggccatgttc cgctggatgc gattccatga
      721 tttgagcttg tggacaggag accgcgatct cctgcccgat tatgaaaatg atgatggcgt
      781 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gttccagagg
      841 ttagtacagc tgaacctata tcaatggaac ctgtagctgg tgctgccaca gcagcagcaa
      901 ctgcaggtca agttaatatg attgacccct ggattatgag taattatgtt caagcccctc
      961 aaggagagtt cacaatttcc cctaacaata cccccggaga catattgttt gatttacaat
     1021 taggtcccca tctaaacccg tttctatcac acctggccca gatgtacaat gggtgggttg
     1081 gcaatatgaa agttagggtg ctgcttgctg gtaatgcatt tacagcaggc aaaataataa
     1141 tcagttgtgt ccctccaggt tttgcagccc agaatgtttc aatagcccaa gctactatgt
     1201 tcccccatgt tattgcagat gtgcgagtgc ttgaaccaat tgaagtccca ctagaggatg
     1261 tgaggaatgt gcttttccac aacaatgatt ccaccccaac tatgagattg atttgtatgt
     1321 tgtacacccc tctccgtgct agtggtagtt cttctggcac tgatccattt gttatagctg
     1381 gtcgggtcct cacctgtcct agtcctgact tcaacttctt attccttgtc ccccctaacg
     1441 ttgaacagaa aaccaagcca ttcagtgtgc ccgatctccc ccttaatgtt ctctcaaact
     1501 ctagggtccc ctccttgata aagtccatga tggtctccca agatcatgga cagatggtac
     1561 aattccaaaa tggcagggtt acattagatg gacagctcca aggcaccacc cccacttcag
     1621 ctagccagct ctgcaaaatt cgagggacgg tctaccatgc aactggtgga caagggctta
     1681 atttaactga aattgatggg accccctacc atgcatttga gagccctgcc ccaattggct
     1741 tccccgattt aggtgagtgt gattggcaca ttaatgcatc ccctgccaat gccttcacag
     1801 atggtagcat tatacacaga attgatgtag ttcaggatcc tacttttgcc ccccatctag
     1861 gcactatcca ctatactaat gctaattatg atgctaatgt tagcctgatc tgttcacttg
     1921 aatggctttc cccaccaagt ggtggtgctc taaaagcaaa cccatgggcc attcctcggt
     1981 atggctcaac cctgactgag gccgcccaat tggccccacc aatatacccc cctggctttg
     2041 gtgaggcaat tgttttcttt atgtctgatt tccctatagc taatggttca gatggtctga
     2101 gtgtcccctg cactatacca caagagtttg tgactcactt tgttaatgaa caagcaccaa
     2161 cccgtgggga agctgccctc cttcattatg ttgaccctga cacacaccgc aatctaggtg
     2221 agtttaaatt atatcctgaa gggttcatga cctgcgtacc aaattctagt ggtagtggtc
     2281 cccaaacact gcccatcaat ggggtcttca ctttcatctc ttgggtttcc cgtttctacc
     2341 aactaaagcc tgtgggaacg accggaccgg ttcgtaggct cggaattagg agatcataat
     2401 ggcccaagca atatttggag caatagctgc gacggctgct ggcagtgctg taggtgcggg
     2461 catccaggct ggcactgagg ctgcgctcca acaccagcgc ttccagcagg acttaacgtt
     2521 gcagagtaac actttcaaac atgataagga aatgttaggg ttgcaggttg gcgcttctac
     2581 tgccctctta caaaatagtc tcaacactcg ctacaacatg cttaccaatg ctggtctctc
     2641 atcctcggat gcagctcgca tggtggttgg tgcgcccgct acgcgtgttg tagactggaa
     2701 tggcaccaga atatcagcac cgcggtccac tgccaccaca ctaaggtctg gcgggtttat
     2761 gacaatccca actctataca agggcaaaca acagcagaag gctccagctg aaattggtct
     2821 gtctaatcca aattatgggt catctgtgtc ttcaagggtt gctgattggg tttcttctca
     2881 aaattcttct cgctcgtcct tgggcccata tcaccccagt gcattgcaaa caacatgggt
     2941 gacaccaccc ggctcaagtt ctacttctac tatctcttct gtgtctactg cacctagata
     3001 ttttaatact gataggttgc ctctattcgc aaatatgagg aaataatttt tgtaatatga
     3061 aatgtgggca tcatattcaa ttgg
//