Human calicivirus
Typing tool

Complete norovirus genomes

GQ856469  GII.25
 GII.P38

Length: 3,61 | 3 CDS 

ORF1: 1..787
ORF2: 768..2384
ORF3: 2384..3061

LOCUS       GQ856469                3061 bp    RNA     linear   VRL 05-OCT-2011
DEFINITION  Norovirus Hu/GII.4/Beijing/53931/2007/CHN RNA-dependent RNA
            polymerase gene, partial cds; capsid gene, complete cds; and minor
            structural protein gene, partial cds.
ACCESSION   GQ856469
VERSION     GQ856469.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Beijing/53931/2007/CHN
  ORGANISM  Norovirus Hu/GII.4/Beijing/53931/2007/CHN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE   1  (bases 1 to 3061)
  AUTHORS   Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
            Tan,M., Jiang,T. and Duan,Z.J.
  TITLE     Genetic diversity of noroviruses in Chinese adults: Potential
            recombination hotspots and GII-4/Den Haag-specific mutations at a
            putative epitope
  JOURNAL   Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
   PUBMED   21803173
REFERENCE   2  (bases 1 to 3061)
  AUTHORS   Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
            Jiang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2009) Department of Viral Diarrhea, National
            Institute for Viral Disease Control and Prevention, China CDC,
            Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES             Location/Qualifiers
     source          1..3061
                     /organism="Norovirus Hu/GII.4/Beijing/53931/2007/CHN"
                     /mol_type="genomic RNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:679281"
                     /geo_loc_name="China: Beijing"
                     /collection_date="2007"
     CDS             <1..787
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ACY00634.1"
                     /translation="QQRHILGAALEIMVRFSAEPELAQTVAEDLLAPSVVDVGDFKVA
                     INEGLPSGVPCTSQWNSISHWLITLCAMSEVSGLSPDVVQTNSCFSFYGDDEIVSTDI
                     KLDPMKLTNKLKEYGLIPTRPDKTEGPLIIKESLEGLTFLRRVVCRDPAGWYGKLDQS
                     SIMRQLYWTKGTNHDDPNETMIPHSQRPIQLMSLLGEAALHGPTFYKKVSKLVITELK
                     EGGMDFYVPRHEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
     CDS             768..2384
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid"
                     /protein_id="ACY00635.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEINNEVMALEPVAGGAIAAPLTGQ
                     TNVIDPWIRTNFVQAPNGEFTISPRNSPGEVLLNMELGPELNPFLGHLSRMYNGYAGG
                     IEVQVLMAGNAFTAGKVIFAAVPPHFPVENLSPPQVTMFPHVIVDVRTLEPILLPLPD
                     VRNQFFHYSQVDEPKMRLVAMLYTPLRSNGSAEDVFTVSCRVLTRPSPDFEFNYLVPP
                     TVESRTKPFTVPILTIGEMSNSRFPAPIDVIYTSPNDNQNVQPQNGRCTLDGELQGTT
                     QLVPSGVCAFRGRITSHEGSEQNQWHMQLTNLNGTPFDPTEDIPAPLGTPDFKGEIFG
                     FISQRNAQNDPGQSQPANRAHDAVVSTRAPKFTPKLGSVMIGTWVNSDIENQPSKFTP
                     VGLNSSENFKQWELPDYSGVLTLNMGLAPVVHPTYPGEQILFFRSYIPLKGGHGNPAI
                     DCLLPQEWIQHFYQESAPSQTDVALLNPDTGRVLFEAKLHRQGYITIAKSGDGPIVVP
                     PNGYFRFDSWVNQFYSLAPMGNGNGRRRVQ"
     CDS             2384..>3061
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACY00636.1"
                     /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQSA
                     SFAHDKEMLQAQVAATKQLQSDMIAIKYGVLSAGGFSPTDAARGAVNAPMTKVLDWNG
                     TRYWAPNAATTTMYSGGFTSQPVHRSTPNFTVKDKPAPSSASSTYKSNSTATTRLNSS
                     SSGSSVSTATTSLPSTTRTAEWVRQQNRSLEPYLPGSLRTAFVTPPSSSASSTGTVST
                     VPKGVLDS"
ORIGIN      
        1 ccaacagagg cacatactgg gggctgccct tgaaataatg gtcaggttct ctgctgagcc
       61 cgagctggca caaactgtgg ctgaagatct cctagccccc agcgttgtgg atgttggtga
      121 tttcaaggtt gccataaacg agggcctacc ctccggggta ccgtgcacat cacagtggaa
      181 ttcaatctcc cactggctaa taacgctgtg tgccatgtca gaagtctcag gattatcacc
      241 agatgtagtg caaacaaatt cctgtttctc attctacggg gatgacgaga tagttagcac
      301 tgacatcaaa ttagacccca tgaagctgac caacaaactg aaagagtatg ggttgatacc
      361 aacaaggcca gataaaacag aagggccact aataattaag gagagtcttg agggtttaac
      421 tttcctgaga agggttgtgt gccgagatcc agccggctgg tacggaaagc ttgaccagtc
      481 ctcaatcatg agacaattgt actggactaa ggggaccaac catgatgatc ctaatgagac
      541 aatgatccca cattctcaga ggcccataca actaatgtca ctacttgggg aagcagcact
      601 acatgggcca accttttaca aaaaggttag caaattggtc atcactgaac tcaaagaagg
      661 tggaatggat ttttacgtgc caagacatga acccatgttt aggtggatga gattctctga
      721 cctcagcact tgggagggcg atcgcaatct ggctcccgaa ggtgtgaatg aagatggcgt
      781 cgaatgacgc tgctccatct aatgatggtg ccgccggcct cgtaccagag atcaacaatg
      841 aggtcatggc attggaacca gtagctgggg gagctatcgc agccccgctt actggacaaa
      901 caaatgtaat tgatccctgg ataagaacta attttgtaca agccccaaat ggtgagttca
      961 ccatctctcc cagaaattcc ccaggagaag ttttattgaa catggaattg ggccctgagt
     1021 taaacccctt cttaggacat ttatctagaa tgtataatgg ctatgctggt gggattgaag
     1081 tccaagttct gatggcggga aacgccttca cggcaggtaa ggtcatcttt gcagctgttc
     1141 caccccattt ccctgttgaa aatttgagtc ctccacaagt gactatgttc cctcatgtaa
     1201 ttgtagatgt taggaccttg gaaccaatcc tgttgcccct tcccgatgtg agaaaccaat
     1261 tctttcacta cagccaggtg gatgaaccca agatgcggtt ggtggccatg ctctacacac
     1321 cgctgagatc taacgggtcc gcagaagacg tcttcacagt gtcttgcaga gtgttaacca
     1381 ggccatcacc agattttgaa ttcaattatt tggtgccacc aactgtagaa tcaagaacca
     1441 agcctttcac tgtacccatc ctaactattg gggaaatgtc aaattcacgc ttccctgccc
     1501 ctatagatgt gatctataca agtcccaatg ataatcagaa tgtgcagcca caaaatggca
     1561 gatgcaccct agatggggaa ctgcaaggca ccacccaact ggtcccatca ggtgtgtgtg
     1621 cgttcagggg cagaatcacg agccacgagg gatcagagca aaaccagtgg cacatgcaac
     1681 tgaccaacct caatgggaca ccatttgacc caacagaaga catccccgca ccccttggta
     1741 cccctgactt caaaggagaa atatttggat tcatatcaca aagaaatgca caaaatgatc
     1801 caggacaaag ccaaccagcc aacagggcac acgatgcggt ggtatctact agggcaccta
     1861 aattcactcc aaaactgggg tcagtgatga ttggcacatg ggtgaattct gacattgaga
     1921 accaaccctc aaaattcacc ccagttgggc taaatagcag tgaaaatttc aagcagtggg
     1981 aactaccaga ttactcagga gtgctaaccc ttaacatggg attggcaccc gttgtccacc
     2041 caacctaccc cggtgagcaa atcctattct ttaggtcata tatcccacta aaaggtggtc
     2101 acggcaaccc cgccatagac tgcctccttc cccaggagtg gatccagcac ttctatcagg
     2161 agtctgcgcc ctcccaaact gatgttgcct tacttaatcc cgatacagga cgagtcctgt
     2221 tcgaggccaa attgcacaga caaggataca tcaccattgc aaaatcaggg gatggaccaa
     2281 ttgttgtgcc cccaaatgga tatttcaggt ttgattcttg ggtgaaccag ttttactctc
     2341 ttgcccccat gggaaacgga aatgggcgta gaagggttca ataatggcag gagcattcat
     2401 agcaggattg gcaggtgaca tagtcaccaa tgggataggg tctttggtca atgcaggggc
     2461 taatgcaatt aatcagaaag ttgattttga aaataataag caactccaat cagcttcttt
     2521 tgctcatgac aaagagatgc tccaggcaca agtggctgcg accaagcagc tccaatctga
     2581 catgattgcc atcaagtatg gtgtgctatc cgctggcgga ttctcaccca ctgatgcagc
     2641 aagaggcgcg gtcaacgcgc ccatgacaaa agtattggac tggaatggaa ccagatactg
     2701 ggcacccaat gcggccacaa cgaccatgta ctccggtggg ttcaccagtc agccggtaca
     2761 caggtcaaca ccaaatttca cagtgaagga caaacctgca cccagttctg catcatccac
     2821 gtacaagtcc aactccacag caacgaccag actgaattcc agctcttcag ggtccagtgt
     2881 ctccacagcc accacctcac tcccatccac caccaggacg gccgagtggg tgagacaaca
     2941 aaacaggtca ctggaaccct atctacctgg ttcgctgaga acagcttttg tcactccacc
     3001 atcaagttca gcttctagta caggcacagt ctcaaccgtg cctaaaggtg ttttggactc
     3061 c
//