Human calicivirus
Typing tool

Complete norovirus genomes

GQ856468  GII.21
 GII.P21

Length: 3,174 | 3 CDS 

ORF1: 1..787
ORF2: 774..2387
ORF3: 2387..3145

LOCUS       GQ856468                3174 bp    RNA     linear   VRL 05-OCT-2011
DEFINITION  Norovirus Hu/GII.4/Beijing/55185/2008/CHN RNA-dependent RNA
            polymerase gene, partial cds; and capsid and minor structural
            protein genes, complete cds.
ACCESSION   GQ856468
VERSION     GQ856468.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Beijing/55185/2008/CHN
  ORGANISM  Norovirus Hu/GII.4/Beijing/55185/2008/CHN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3174)
  AUTHORS   Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
            Tan,M., Jiang,T. and Duan,Z.J.
  TITLE     Genetic diversity of noroviruses in Chinese adults: Potential
            recombination hotspots and GII-4/Den Haag-specific mutations at a
            putative epitope
  JOURNAL   Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
   PUBMED   21803173
REFERENCE   2  (bases 1 to 3174)
  AUTHORS   Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
            Jiang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2009) Department of Viral Diarrhea, National
            Institute for Viral Disease Control and Prevention, China CDC,
            Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES             Location/Qualifiers
     source          1..3174
                     /organism="Norovirus Hu/GII.4/Beijing/55185/2008/CHN"
                     /mol_type="genomic RNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:679310"
                     /country="China: Beijing"
                     /collection_date="2008"
     CDS             <1..787
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ACY00631.1"
                     /translation="QQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKIS
                     INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDI
                     KLDPEKLTAKLKEYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQS
                     SILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELK
                     EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             774..2387
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid"
                     /protein_id="ACY00632.1"
                     /translation="MASNDAAPSNDGATGLVPEINTETLPLEPVAGAAIAAPVTGQNN
                     IIDPWIRNNFVQAPNGEFTVSPRNSPGEILMNLELGPDLNPYLAHLSRMYNGYAGGVE
                     VQVLLAGNAFTAGKILFAAVPPNFPVDMLSPAQITMLPHLIVDVRTLEPIMIPLPDVR
                     NVFYHFNNQPAPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPPSV
                     ESKTKPFTLPILTIGELTNSRFPAPIDQLYTSPNADIVVQPQNGRCTLDGELQGTTQL
                     LTTAICSYRGMTSNPTSDYWDDHLLHLVHPNGATYDPTEDVPAPFGTQDFRGILYGML
                     TQNPRTSGDEAANSHGIYISSTSEKFTPKLGTIGLHQVQGRHSQHQQSKFTPVGIAVN
                     GNTPFRQWELPNYSGALTLNTNLAPAVGPNFPGEQILFFRSNVPSVQGGQPIEIDCLI
                     PQEWVSHFYQESAPSQSDVALVRYVNPDTGRTIFEAKLHRQGFITIAATGSNPVVVPP
                     NGYFRFDSWVNQFYALAPMGTGNGRRRVQ"
     CDS             2387..3145
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACY00633.1"
                     /translation="MAGAFIAGLAGDMLTNTVGSLVTTGANAINQKVEYDFTKQLQSA
                     SFQHDKDMLQAQINATKQLQSDMMAIKAGVLTAGGFSPADAARGAVNAPMTKVLDWSG
                     TRYWAPNSTKTTSQSGQFSSTTVHRPFVQSKTVQPSPSRALSSSGSVRSLSTQSTMLS
                     NSSSSSRGTPSTQSTDISSSRTADWVRSQRSLSPYMDGALQTAFVTPPSSRASSTGTV
                     STVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN      
        1 acagcaaaga gcagtgctgg ctgcagccct ggaaataatg gtcaaatttt catcagaacc
       61 tcatctggcc caagtggttg cagaagacct cttgtccccc agtgtgatgg atgtgggtga
      121 tttcaagata tcaatcaatg aggggttacc ctctggtgtg ccttgcacct cacagtggaa
      181 ctccattgcc cactggctcc tcacactatg tgcactgtct gaagtcacag atctgtcccc
      241 tgacatcatc caggcaaact ccctattctc cttttatggt gatgatgaaa tagtgagcac
      301 agatatcaaa ttggacccag agaaactgac agcaaagttg aaggaatacg ggctaaaacc
      361 aacccgtcct gataaaacag aaggacccct aattatctct gaagacttgg acggcctgac
      421 cttcttacgg agaacggtga cccgcgatcc ggctgggtgg tttggcaaac tggaccaaag
      481 ttcaatactc agacaaatgt actggaccag gggaccaaac catgaggacc cctctgaaac
      541 aatgatacca cactcccaaa gacccataca actgatgtca ctactaggtg aagctgcact
      601 acatggccca tcattctata gtaaaattag caagttggtc atctcagaat tgaaagaggg
      661 tgggatggac ttttacgtgc ccagacaaga accaatgttt aggtggatga ggttctcaga
      721 tttgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
      781 cgaatgacgc cgctccatct aacgatggtg ctacaggtct cgtaccagag atcaacactg
      841 agaccttgcc tctcgagccc gtggccggag cggcaattgc tgcccctgtt acgggccaaa
      901 ataatataat tgatccctgg attagaaata attttgtgca ggcgcctaat ggtgagttta
      961 cagtctcccc tagaaattcc cctggtgaaa ttttaatgaa cttggagtta gggccagatc
     1021 ttaatccata tttggctcac ctttcaagaa tgtacaatgg ttatgctgga ggtgtagaag
     1081 tgcaagtgct cctagctggg aatgcgttca cggcaggaaa gatccttttt gcagcagtcc
     1141 ccccaaattt ccccgttgat atgctcagtc ctgctcaaat cacaatgctt ccccatttaa
     1201 ttgtagatgt cagaactttg gagcccatta tgatccctct gcccgatgtt aggaatgttt
     1261 tctatcactt taataaccag cctgccccaa gaatgagatt ggttgccatg ctctacaccc
     1321 ctttaagatc caatgggtcc ggtgatgacg tattcaccgt ctcctgcagg gtgttaacca
     1381 gacctactcc ggactttgag tttacatact tagtcccccc ctcggtagag tccaaaacca
     1441 aacctttcac cctacccatc ctaacaattg gagagttgac aaactctaga tttccagccc
     1501 cgatcgatca gttgtacact tcacccaacg ctgatatagt tgtccaaccc caaaatggcc
     1561 ggtgcacact ggatggtgag ctacaaggta caacacaact tttgacaaca gcaatatgct
     1621 catacagggg catgacatca aaccccacta gtgactactg ggatgatcac ctcctgcacc
     1681 tggtccaccc caatggggca acatatgacc cgaccgagga cgtgccagct ccttttggca
     1741 cgcaggactt tcggggcatt ttgtatggga tgttgactca aaacccccga acctccgggg
     1801 acgaagccgc caactcccat gggatctaca tctcatccac cagtgaaaag ttcactccaa
     1861 aattgggtac aattggctta caccaagtgc aagggcgaca tagccagcac caacagtcaa
     1921 aattcacacc agtagggata gcagtgaatg gcaacactcc tttcagacag tgggaactcc
     1981 caaactactc tggtgccctc accctcaaca caaaccttgc accagcggtt gggcccaact
     2041 tccctgggga gcaaatcctt ttcttcaggt caaatgttcc aagtgttcaa ggtggccaac
     2101 ctatagagat tgattgcctg atcccacaag aatgggtctc ccatttttat caagaatcag
     2161 ccccttctca gagtgatgtg gccttggtca ggtatgtcaa ccctgacaca gggcgcacaa
     2221 tctttgaggc caaattgcat aggcagggat ttatcaccat agcggccact ggaagcaacc
     2281 ccgtggtcgt gcctcccaat gggtatttca gatttgattc ctgggtcaac cagttttatg
     2341 cactcgcccc catgggaact gggaatgggc gcagaagagt tcagtaatgg ctggagcttt
     2401 catagcagga ttggcaggtg acatgctcac caacactgtt ggttccctgg tcacaacggg
     2461 ggctaacgct ataaaccaaa aagttgaata tgacttcacc aaacaactgc aaagtgcctc
     2521 cttccaacat gacaaggaca tgcttcaagc ccagatcaac gcaacaaaac aattgcagag
     2581 tgacatgatg gccatcaaag caggggtttt gaccgctggc ggcttttccc ctgctgatgc
     2641 agccagaggg gcagtcaatg ctccaatgac aaaagtctta gattggtcag ggacgcgtta
     2701 ctgggcaccc aactcaacca aaacaacaag ccaatctggc cagttctcct ctacaactgt
     2761 acatagaccc tttgttcaat caaaaactgt ccaaccatct ccttcgcggg cgctctcatc
     2821 ttcgggtagc gttcgcagcc tttctactca atcaacaatg ctttcaaatt ctagctcctc
     2881 ttctcgtggg actccttcaa ctcaatcaac agatatttct tcctcgcgaa cggcagactg
     2941 ggttcgaagt cagaggagcc tgagccccta tatggatggg gctctgcaga cagcctttgt
     3001 caccccacca tcaagcagag cttcttctac aggcaccgtc tcaacagtgc ctaaaggggt
     3061 tttggactcc tggacacctg cgttcaacac ccgcaggcag ccgcttttcg cacacctcag
     3121 gaagaggggg gagtcacaag cctagtgaaa agaattattt tgataaattc tttt
//