Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| GQ856467 | GII.3 | |
|
|---|---|---|---|
| GII.P12 |
ORF1: 1..787
ORF2: 768..2414
ORF3: 2414..3178
LOCUS GQ856467 3230 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/55040/2007/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856467
VERSION GQ856467.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/55040/2007/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/55040/2007/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3230)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3230)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3230
/organism="Norovirus Hu/GII.4/Beijing/55040/2007/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679296"
/country="China: Beijing"
/collection_date="2007"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00628.1"
/translation="QQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKIS
INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDI
KLDPEKLTAELKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQS
SILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKVSKLVIAELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVD"
CDS 768..2414
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00629.1"
/translation="MKMASIDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGFAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLVPMGTGNGRRRIQ"
CDS 2414..3178
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00630.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNLKTNQAPKSTPSSGSSVRSHSTQTTSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVAPPSSTASSSG
TVSTVPKNVLDSWISAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 acagcaaaga gccgtgttag cagcagcctt ggaaatcatg gtcaagttct ccccagagcc
61 gcatctggcc caaaaggttg cagaagacct tctttctccc agcgtgatgg acgtgggtga
121 tttcaaaata tcaatcaatg agggtctccc ctccggggtg ccctgcacct cccaatggaa
181 ttccatcgcc cactggctcc tcactctctg tgcactctct gaggttacaa acctgtcccc
241 tgacattatt caggccaatt ctctcttttc cttctacggt gatgatgaaa ttgtgagtac
301 agacataaaa ttggacccag aaaaactgac agcagaactc aaggaatacg ggttgaaacc
361 gacccgccct gacaagactg aaggacccct tgtcatctct gaagacctga atggcctaac
421 cttcctgcgg aggaccgtga cccgcgaccc agcaggctgg tttggaaagt tggaacagag
481 ttcaatactc agacaaatgt attggactag gggccccaac catgaagacc catctgaaac
541 aatgatacca cactcccaga ggcccataca attgatgtct ttgctgggtg aggctgcact
601 ccacggccca gcattctaca gcaaagtcag taaactggtc attgcagagt tgaaggaagg
661 tggcatggat ttttacgtgc caagacaaga gccaatgttc agatggatga gattctcgga
721 tctgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
781 cgattgacgc cgctccatct aatgatggtg ccgccggcct cgtcccagag atcaacaatg
841 aggcaatggc gctagatcca gtggcgggtg cagcgatagc agcacccctc actggccagc
901 aaaatataat tgatccctgg attatgaata attttgtgca agcacctggt ggtgagttta
961 cagtgtcccc tagaaattcc cctggtgaag tgctcctcaa tttggaattg ggcccagaaa
1021 taaatcccta tttggcccat cttgctagaa tgtataatgg ttttgcaggt gggtttgaag
1081 tgcaggtagt cctagctgga aatgcgttta cagcaggaaa gataatcttt gcagctatac
1141 cccctaattt cccaattgac aatctaagcg cagcacagat cacaatgtgt ccacatgtga
1201 ttgtggacgt cagacagttg gaaccggtca acctcccgat gcctgatgtt cgcaataact
1261 tcttccatta caaccaaggg tctgattcga aattgcgctt agttgcaatg ctgtacacac
1321 ctctcagggc aaataattct ggggatgatg tctttactgt gtcttgtaga gtgctgacta
1381 ggcctagccc tgacttttca tttaatttcc ttgtgccacc cactgtggag tcaaagacaa
1441 aacccttcac cctccctatt ctgactatct ctgagatgtc taattctagg tttccagtgc
1501 cgattgattc actgcacact agcccaactg agaatattgt tgtccaatgc caaaatggac
1561 gcgtcactct tgatggtgag ttgatgggca ccacccaact cttacctagt caaatctgtg
1621 cttttagggg cgtgctcacc agatcaacaa gcagggccag tgaccaggcc gacacagcaa
1681 cccctagatt gtttaattat tattggcaca tacaattgga taatctaaat gggactcctt
1741 atgatcctgc agaagacata ccaggccccc tggggacacc agatttccgg ggcaaagtct
1801 ttggcgtggc cagccagaga aatcccgaca gcacaactag agcacatgaa gcaaaggtgg
1861 acacaacagc tggtcgtttc accccaaaac taggctcatt agagatatcc actgaatctg
1921 atgactttga tcaaaaccaa ccaacaaggt tcaccccagt tggcattggg gttgaccacg
1981 aggcagattt tcaacaatgg tctttgcccg actattctgg tcagttcacc cacaacatga
2041 acttagcccc agctgttgct cccaacttcc ctggtgagca gctccttttc ttccgctcac
2101 agttaccatc ttctggtggg cgatccaatg ggattctaga ctgcctggtc ccccaagaat
2161 gggttcagca cttctaccaa gaatcggccc ccgcccaaac ccaagtggcc ctggtcagat
2221 atgtcaaccc agacactggt agagtgttgt ttgaggccaa gctgcacaaa ttaggtttca
2281 tgactatagc taagaatggt gactctccaa taactgtccc cccaaatgga tactttaggt
2341 ttgaatcttg ggtgaaccca ttttatacac ttgtccccat gggaactggg aatgggcgta
2401 gaaggattca ataatggctg gagcttttat agcagggtta gctggtgata tattcacaaa
2461 cactgtagga tctctggtta atgcaggggc taatgccatt aatcaaaaag ttgattttga
2521 aaataataaa tatttgcaaa atgcttcctt taatcatgat aaggagatgt taaatgcaca
2581 aattgaggca acaaaaaggt tacaggctga catgattgct atcaaacaag gggttttgac
2641 cgctggcggc ttttccccta ctgatgcagc ccgcggggca attaacgccc ccatgacaaa
2701 agtcctagat tggaatggaa cgaggtactg ggcaccaaat gccacctcta cgacctcgat
2761 gtcgggtggc ttcacaaacc aggctgtgca cagaaccacg ccaaatctta aaacgaacca
2821 ggcccccaaa tccacaccca gcagtgggtc ctcagtgagg tcacactcaa cccaaaccac
2881 tagtctgagc tcacactcgt ccgggtcgtc tcgatccagc gggtctacag ttgttagctc
2941 attaccatcc tccaacagga ctagggactg ggtcaaccag caaaatttta atttggaacc
3001 acacatgcct gggtccctta ggacagcttt tgttgctcca ccatctagta cagcctctag
3061 ttcaggcact gtctcaaccg tgcccaaaaa tgttttggac tcctggatat ctgcgtttaa
3121 tacgcgcaga cagccgctat tcgcacacct tcgtagaagg ggggagtcaa atgtttagtg
3181 aaaagattat tttaaatttg atttaaattg gatttgattt ggaatctttt
//