Typing tool
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Typing tool
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Complete norovirus genomes
| GQ856466 | GII.3 | |
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| GII.P12 |
ORF1: 1..787
ORF2: 768..2414
ORF3: 2414..3178
LOCUS GQ856466 3230 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/55037/2007/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856466
VERSION GQ856466.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/55037/2007/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/55037/2007/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3230)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3230)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3230
/organism="Norovirus Hu/GII.4/Beijing/55037/2007/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679295"
/country="China: Beijing"
/collection_date="2007"
CDS <1..787
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00625.1"
/translation="QQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKIS
INEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDI
KLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQS
SILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELK
EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 768..2414
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00626.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2414..3178
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00627.1"
/translation="MAGAFIAGLAGDVFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQVEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKTNQAPKSTPSSGSSLRSHSTQITSLSS
HSSGSSRSSGSTVVSSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 acaacaaaga gccgtgttag cagcagcctt agaaatcatg gtcaagttct ccccagagcc
61 gcatctggcc caaaaggttg cagaagacct tctttctccc agcgtgatgg acgtgggtga
121 tttcaaaata tcaattaatg agggtctccc ctccggggtg ccctgcacct cccaatggaa
181 ttccatcgcc cactggctcc tcactctctg tgcactctct gaggttacaa acctgtcccc
241 tgatattatt caggccaact ctctcttctc tttctacggt gatgatgaaa ttgtgagtac
301 agacataaaa ttggacccag aaaaactgac agcaaaactc aaggaatacg ggttgaaacc
361 gactcgccct gacaagactg aaggacccct tgtcatctct gaagacctga atggcctaac
421 cttcctgcgg aggaccgtga cccgcgaccc agcaggctgg tttgggaagt tggaacagag
481 ttcaatactc agacaaatgt attggactag gggccccaac catgaagacc catctgaaac
541 aatgatacca cactcccaga ggcccataca attgatgtct ttgctgggtg aggctgcact
601 ccacggtccg gcattctaca gcaaaatcag taaactggtc attgcagagt tgaaggaagg
661 tggcatggat ttttacgtgc caagacaaga gccaatgttc agatggatga gattctcgga
721 tctgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
781 cgaatgatgc cactccatct aatgatggtg ccgccggcct cgtcccagag atcaacaatg
841 aggcaatggc gctagatcca gtggcgggtg cagcgatagc agcgcccctc actggccagc
901 aaaatataat tgatccctgg attatgaata attttgtgca agcacctggt ggtgagttta
961 cagtgtcccc taggaattcc cctggtgaag tgctcctcaa tttggaattg ggcccagaaa
1021 taaatcccta tttggcccat cttgctagaa tgtataatgg ttatgcaggt ggatttgaag
1081 tgcaggtagt cctagctgga aatgcgttta cagcaggaaa gataatcttt gcagctatac
1141 cccctaattt tccaattgac aatctaagtg cagcacagat cacaatgtgc ccacatgtga
1201 ttgtggatgt cagacagttg gaaccggtca accttccgat gcctgacgtt cgcaataact
1261 tcttccatta caaccaaggg tctgattcca gattgcgcct agttgcaatg ctgtatacac
1321 ctcttagggc aaataattct ggggatgatg tttttactgt gtcttgtaga gtgctgacta
1381 ggcctagccc tgacttttca tttaatttcc ttgtgccacc tactgtggag tcaaagacaa
1441 aacccttcac cctccctatt ctgactatct ctgaaatgtc taattctagg ttcccagtgc
1501 caattgattc tctgcacacc agcccaactg agaatattgt tgtccagtgc caaaatggac
1561 gcgtcactct tgatggtgag ttgatgggca ccacccaact cttacctagt caaatctgtg
1621 cttttagggg cgtgctcacc agatcaacaa gcagggccag tgaccaggcc gacacagcaa
1681 cccctagatt gtttaattat tattggcaca tacaattgga taatctaaat gggactcctt
1741 atgatcctgc agaagacata ccaggccccc tggggacacc agatttccgg ggcaaagtct
1801 ttggcgtggc cagccagaga aatcccgaca gcacaactag agcacatgaa gcaaaagtgg
1861 acacaacagc tggtcgtttt accccaaaac taggctcatt agagatatcc actgaatctg
1921 gtgactttga tcaaaaccaa ccaacaagat tcaccccagt tggcattggg gttgaccacg
1981 aggcagattt ccaacaatgg tctctacccg actattctgg tcagttcacc cacaacatga
2041 acttagcccc agctgttgct cccaacttcc ctggtgagca gctccttttc ttccgctcac
2101 agttaccatc ttctggtggg cggtccaacg ggattctaga ctgcctggtc ccccaagaat
2161 gggttcagca cttctaccaa gaatcggccc ccgcccaaac ccaggtggcc ctggttagat
2221 atgtcaaccc tgacactggt agagtgttgt ttgaggccaa gctgcacaaa ttaggtttca
2281 tgactatagc taagaatggt gactctccaa taactgtccc cccaaatgga tactttaggt
2341 ttgaatcttg ggtgaaccca ttttatacac ttgcccccat gggaactggg aatgggcgta
2401 gaaggattca ataatggctg gagcttttat agcaggatta gctggtgatg tattcacaaa
2461 cactgtagga tctctagtta atgcaggggc taatgccatt aatcaaaaag ttgattttga
2521 aaataataaa tatttgcaaa atgcttcctt taatcatgat aaggaaatgc tgaatgcaca
2581 agttgaggca acaaagaggt tacaggctga catgattgct atcaaacaag gggttttgac
2641 cgctggcggc ttttccccta ctgatgccgc ccgcggggca attaatgccc ccatgacaaa
2701 agtcctagat tggaatggaa cgaggtactg ggcaccaaat gccacctcta caacctcgat
2761 gtcgggtggc ttcacaaacc aggctgtgca cagaaccacg ccaaatttta aaacgaacca
2821 ggcccccaaa tccacaccca gcagtgggtc ttcattgagg tcacactcaa cccaaatcac
2881 tagtctgagc tcacactcgt ccgggtcgtc tcgatccagc gggtctacag ttgttagctc
2941 attaccatcc tctaacagga ctagggactg ggtcaaccaa caaaatttta atttggaacc
3001 acacatgcct gggtccctta ggacagcttt tgttactcca ccatctagta cagcctctag
3061 ttcaggcact gtctcaaccg tgcccaaaaa tgttttggac tcctggacat ctgcgtttaa
3121 tacgcgcaga cagccgctat tcgcacacct tcgtagaagg ggggagtcaa atgtttagtg
3181 aaaagattat tttaaatttg atctaaattg gatttgattt ggaatctttt
//