Human calicivirus
Typing tool

Complete norovirus genomes

GQ856464  GI.6
 GI.P11

Length: 3,109 | 3 CDS 

ORF1: 1..786
ORF2: 770..2392
ORF3: 2392..3021

LOCUS       GQ856464                3109 bp    RNA     linear   VRL 05-OCT-2011
DEFINITION  Norovirus Hu/GII.4/Beijing/55063/2007/CHN RNA-dependent RNA
            polymerase gene, partial cds; and capsid and minor structural
            protein genes, complete cds.
ACCESSION   GQ856464
VERSION     GQ856464.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Beijing/55063/2007/CHN
  ORGANISM  Norovirus Hu/GII.4/Beijing/55063/2007/CHN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
            Tan,M., Jiang,T. and Duan,Z.J.
  TITLE     Genetic diversity of noroviruses in Chinese adults: Potential
            recombination hotspots and GII-4/Den Haag-specific mutations at a
            putative epitope
  JOURNAL   Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
   PUBMED   21803173
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
            Jiang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2009) Department of Viral Diarrhea, National
            Institute for Viral Disease Control and Prevention, China CDC,
            Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Norovirus Hu/GII.4/Beijing/55063/2007/CHN"
                     /mol_type="genomic RNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:679301"
                     /country="China: Beijing"
                     /collection_date="2007"
     CDS             <1..786
                     /note="ORF1"
                     /codon_start=1
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ACY00620.1"
                     /translation="TQNRQIMTESFSIMCRLTASPELASVVAQDLLAPSEMDVGDYVI
                     RVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTD
                     IEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKNVDGLVFLRRTISRDAAGFQGRLDR
                     ASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEASLHGEKFYRKISSKVIQEI
                     KTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
     CDS             770..2392
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid"
                     /protein_id="ACY00621.1"
                     /translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
                     TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
                     WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
                     PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
                     LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG
                     QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
                     NFTFQTQDRDPSQSVTFATNDASFVPYLGSVSPHNGEGFQAGDIIGSLGWISAPSDNS
                     QFNVWAIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE
                     FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
                     GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
     CDS             2392..3021
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACY00622.1"
                     /translation="MAQAVIGAIAASAAGSILGAGIQAGAEVGLQAQRYQQDLQLQQN
                     SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
                     TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
                     SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN      
        1 acacaaaata ggcaaattat gactgaatca ttctcaatca tgtgtcggct aactgcttct
       61 ccagaattgg cctcagtggt ggcacaagat ctgcttgcac cctcagaaat ggacgttggt
      121 gactatgtca taagggtgaa ggaaggcctc ccatccggct ttccatgcac gtcacaagtc
      181 aatagtatta accattggct gataactttg tgtgccctct ctgaggtgac tggcctgtca
      241 ccagatgtta ttcagtctat gtcatacttt tctttctatg gtgatgatga aatagtgtct
      301 actgacatag aatttgaccc agcaaaattg acacaggtcc ttaaagagta tggcctcaaa
      361 cccacccgcc ctgacaagag tgagggtcca ataattgtga ggaagaatgt ggatggccta
      421 gtcttcctac gtcgcaccat ttcccgcgac gccgcggggt tccaagggcg actagaccga
      481 gcttccattg aaagacagat ctattggacc agagggccca atcactcaga cccctttgaa
      541 accttggtgc cccaccaaca aaggaaagtc cagttgatat cactgttagg tgaggcctca
      601 ttgcatggtg aaaagttcta taggaagatc tcaagcaaag tcatccaaga gattaagaca
      661 gggggccttg aaatgtacgt accagggtgg caagccatgt tccgctggat gcggttccac
      721 gatcttggcc tgtggacagg agatcgcaat ctcctgcccg aattcgtaaa tgatgatggc
      781 gtctaaggac gccccaacat cccctgatgg cgctagtggc gccggccagc tggtaccgga
      841 ggctaataca gctgagcaaa tttcaatgga ccctgttgcg ggtgcttcaa cagcagtcgc
      901 aacggccggg caagttaaca tgattgaccc atggatcttc aacaactttg tccaagcacc
      961 ccaaggagaa ttcactattt cccctaataa tacccccggt gacattttgt ttgacctaca
     1021 actaggaccc catcttaacc catttctagc ccatctctca cagatgtata atggttgggt
     1081 cggcaatatg cgtgtgcgca tattgttggc cgggaacgcc ttcacagctg gaaagataat
     1141 catttgctgt gtcccccctg gttttgatgc tagaatactc acaatagctc aagcaactct
     1201 cttcccacat ttgattgctg atgttaggac tcttgagcct gtggagcttc ctttggagga
     1261 cgtacgcaac gttctctacc acaacagtag ccagccacag ccaacaatgc ggctggttgc
     1321 tatgttgtac acccccctcc gcactggtgg tggttctgga ggcactgatg cctttgtggt
     1381 ggcgggcagg gtgcttacgt gccccgcccc cgactttagc tttttgtttc ttgttccccc
     1441 ttccgttgaa caaaagacca gagttttcag tgtccccaat atacctctga aagacctctc
     1501 aaactctcgt gtccctgtgc ctatacaggg catgtttatg tccccagatg ttaatcagtc
     1561 agtccagttt caaaacggac gctgccaaat tgatggtcaa ctccagggca ccaccccagt
     1621 ctcgctcagc caactctgca agattagggg taaaacttca agcaatgcta gggtgctcaa
     1681 cttaagtgag gtagatggta cacctttcat ccctcttgaa tcaccagcgc cagtaggttt
     1741 tcctgactta ggaggctgtg actggcacgt aaatttcact ttccagactc aagatcggga
     1801 cccatctcaa agtgtgacct ttgcaaccaa tgatgccagc tttgtcccct acttaggtag
     1861 tgtctcccct cacaatgggg aaggttttca agcaggcgac atcataggta gccttgggtg
     1921 gatttcagcc ccgtctgata attcacaatt taatgtttgg gcaataccaa agtatggatc
     1981 tagtctccca gatgtcaccc atcttgctcc tgctgtgttc cccccaggct ttggggaggt
     2041 gatcctatat ttctactcta ccttcccagg ttctggacaa cccagtcaac ttcaagtccc
     2101 atgtttgttg cctcaggagt tcatcaccca tttctgtaac gaacaggctc ccatcgctgg
     2161 ggaggctgcc ctcctccact acgtggaccc tgacacgggg cggaacttgg gggaattcaa
     2221 actctatcct gatgggttta tgacctgtgt ccctaatagt gttagcagtg gccctcaaac
     2281 ccttcctatt aatggagtct ttgtctttgt ttcatgggtg tccagattct atcaactcaa
     2341 gcctgtggga acggcctcag cggctagaag gcttggattg cggcgtatat aatggcccaa
     2401 gctgtcatcg gtgccatagc cgcgtctgcc gctggtagta tactaggggc gggcatacag
     2461 gctggtgctg aggttggtct ccaggctcaa cggtaccagc aggatttaca attgcaacaa
     2521 aattctttca agcatgataa ggaaatgtta ggctatcagg ttcaggctag taatgctctt
     2581 ttagctaaga atcttaacac tagatatgct cttttgcagg cagggggctt atctagtgct
     2641 gatgctgctc gggcagtggc tggtgctcct gtcacccgta tagtggactg gaatggcacg
     2701 cggattgcag cgcctacctc aagcaccact acactcagat ctggtggttt tatggctgtc
     2761 cctataccat tgtcttcaaa gaccaagcaa ccagtgatgt ctgggcagga taatccaaat
     2821 tatgctgctt cttctatctc tagaactgct tcatgggtgc aatctcaaaa ttctatgaga
     2881 tctgtttctc ctttccacag tgatgctctg agaaccgtgt gggtcacacc accaggttca
     2941 tcatcaactt catctgtgca atctagtttt tatggtgttt ttaatacaga tagattgcct
     3001 ctgttcgcaa acagaaggta aagattttgt aataggatgc cagtgggcac catattcaga
     3061 tttggtttta attagattgt ttaaattaaa atttggctca attggtgtt
//