Typing tool
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Complete norovirus genomes
GQ856463 | GI.6 | ||
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GI.P11 |
ORF1: 1..786 ORF2: 770..2392 ORF3: 2392..3021LOCUS GQ856463 3109 bp RNA linear VRL 05-OCT-2011 DEFINITION Norovirus Hu/GII.4/Beijing/53997/2007/CHN RNA-dependent RNA polymerase gene, partial cds; and capsid and minor structural protein genes, complete cds. ACCESSION GQ856463 VERSION GQ856463.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Beijing/53997/2007/CHN ORGANISM Norovirus Hu/GII.4/Beijing/53997/2007/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3109) AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N., Tan,M., Jiang,T. and Duan,Z.J. TITLE Genetic diversity of noroviruses in Chinese adults: Potential recombination hotspots and GII-4/Den Haag-specific mutations at a putative epitope JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011) PUBMED 21803173 REFERENCE 2 (bases 1 to 3109) AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and Jiang,T. TITLE Direct Submission JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National Institute for Viral Disease Control and Prevention, China CDC, Ying-Xin St., Xuan-Wu District, Beijing 100052, China FEATURES Location/Qualifiers source 1..3109 /organism="Norovirus Hu/GII.4/Beijing/53997/2007/CHN" /mol_type="genomic RNA" /host="Homo sapiens" /db_xref="taxon:679311" /country="China: Beijing" /collection_date="2007" CDS <1..786 /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ACY00617.1" /translation="TQNRQIMTESFSLMCRLTASPELASVVAQDLLAPSEMDVGDYVI RVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMSYFSFYGDDEIVSTD IEFDPARLTQVLKEYGLKPTRPDKSEGPIIVRKNVDGLVFLRRTISRDAAGFQGRLDR ASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEASLHGEKFYRKISSKVIQEI KTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV" CDS 770..2392 /note="ORF2" /codon_start=1 /product="capsid" /protein_id="ACY00618.1" /translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA TAGQVNMVDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV NFTFQTQDRDPSQSVTFATNDASFVPYLGSVSPHNGEGFQAGDIIGSLGWISAPSDNS QFNVWAIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI" CDS 2392..3021 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="ACY00619.1" /translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR" ORIGIN 1 acacaaaaca ggcaaattat gactgaatca ttctcactca tgtgtcggct aactgcttct 61 ccagaattgg cctcagtggt ggcacaagat ctgcttgcac cctcagaaat ggacgttggt 121 gactatgtca taagggtgaa ggaaggcctc ccatccggct ttccatgcac gtcacaagtc 181 aatagtataa accattggtt gataactttg tgtgccctct ctgaggtgac tggcctgtca 241 ccagatgtta ttcagtctat gtcatacttt tctttctatg gtgatgatga aatagtgtct 301 actgacatag aatttgaccc agcaagattg acacaggtcc ttaaagagta tggccttaaa 361 cccacccgcc ctgacaagag tgagggtcca ataattgtga ggaagaatgt ggatggccta 421 gtcttcttac gtcgcaccat ttcccgcgac gccgcggggt tccaagggcg gctagaccga 481 gcttccattg aaagacagat ctattggacc agagggccca accactcaga ccccttcgaa 541 accttggtgc cccaccaaca aaggaaagtc cagttgatat cactgttagg tgaggcctca 601 ttgcatggtg aaaagttcta taggaagatc tcaagcaaag tcatccaaga gattaagaca 661 gggggccttg aaatgtacgt accaggatgg caagccatgt tccgttggat gcggttccac 721 gatcttggcc tgtggacagg agatcgcaat ctcctgcccg aattcgtaaa tgatgatggc 781 gtctaaggac gccccaacat cccctgatgg cgctagtggc gccggccagc tggtaccgga 841 ggctaataca gctgagcaaa tttcaatgga ccccgttgcg ggtgcttcaa cagcagtcgc 901 aacggctggg caagttaaca tggttgaccc atggatcttc aacaactttg tccaagcacc 961 ccaaggagaa ttcactattt cccctaataa tacccccggt gatattttgt ttgacctaca 1021 actaggaccc catcttaacc catttctagc ccatctctca cagatgtata atggttgggt 1081 cggcaatatg cgtgtgcgca tattgttggc cgggaacgcc ttcacagctg gaaagataat 1141 catttgttgt gtcccccctg gttttgatgc tagaatactc acaatagctc aagcaactct 1201 cttcccacat ttgattgctg atgttaggac ccttgagcct gtggagcttc ctttggagga 1261 cgtacgcaac gttctctacc acaacagtag ccagccgcag ccaacaatgc ggctggttgc 1321 tatgttgtac acccccctcc gcactggtgg tggttctgga ggcactgatg cctttgtggt 1381 ggcgggtagg gtgcttacgt gccccgcccc cgactttagc tttttgtttc ttgttccccc 1441 ttccgttgaa caaaagacca gagttttcag tgtccccaat atacctctga aagacctctc 1501 aaattctcgt gtccctgtgc ccatacaggg catgtttatg tccccagatg ttaatcagtc 1561 agtccagttt caaaacggac gctgccaaat tgatggtcaa ctccagggca ccaccccagt 1621 ctcgctcagc caactctgca agattagggg taaaacttca agcaatgcta gggtgctcaa 1681 cttaagtgag gtagatggta cacccttcat ccctcttgaa tcaccagcgc cagtaggttt 1741 tcccgactta ggaggctgtg actggcacgt aaatttcact ttccagactc aagatcggga 1801 cccatctcaa agtgtgacct ttgcaaccaa tgatgccagc tttgtcccct acttaggtag 1861 tgtctcccct cacaatgggg aaggttttca agcaggcgac atcataggta gccttgggtg 1921 gatttcagcc ccgtctgata attcacaatt caatgtttgg gcaataccaa agtatggatc 1981 tagtctccca gacgtcaccc atcttgctcc tgctgtgttc cccccaggct ttggggaggt 2041 gatcctatat ttctactcta ccttcccagg ttctggacaa cccagtcaac ttcaagtccc 2101 atgtttgttg cctcaggagt tcatcaccca cttctgtaac gaacaggctc ccatcgctgg 2161 ggaggctgcc ctcctccact acgtggaccc tgacacgggg cggaacttgg gggaattcaa 2221 actttatcct gatgggttta tgacctgtgt ccctaatagt gttagcagtg gcccccagac 2281 ccttcctatt aatggagtct ttgtctttgt ttcatgggtg tccagattct atcaactcaa 2341 gcctgtggga acggcctcag cggctagaag gcttggactg cggcgtatat aatggcccaa 2401 gctgtcatcg gtgccatagc cgcgtctgcc gctggtagta tactaggggc gggcatacag 2461 gctggtgctg aggctggtct ccaggctcaa cggtaccagc aggatttaca attgcaacaa 2521 aactctttca agcatgataa ggaaatgtta ggctatcagg tccaggctag taatgctctt 2581 ttagctaaga atcttaacac tagatatgct cttctgcagg cagggggctt atctagtgct 2641 gatgctgctc gggcagtggc tggtgctcct gtcacccgta tagtggactg gaatggcacg 2701 cggattgcag cgcctacctc aagcaccact acactcagat ctggtggttt catggctgtc 2761 cctataccat tgtcttcaaa gaccaagcaa ccagtgatgt ctgggcagga taatccaaat 2821 tatgccgctt cttctatctc tagaactgct tcatgggtgc aatctcaaaa ttctatgaga 2881 tctgtttctc ctttccacag tgatgctctg agaaccgtgt gggtcacacc accaggttca 2941 tcatcaactt catctgtgca atctagtttt tatggtgttt ttaatacaga tagattgcct 3001 ctgttcgcaa acagaaggta aagattttgt aataggatgc cagtgggcac catattcaga 3061 tttggtttta attagattgt cttaattaaa atttggctta attggtgtt //