Human calicivirus
Typing tool

Complete norovirus genomes

GQ856462  GI.8
 GI.P8

Length: 3,120 | 3 CDS 

ORF1: 1..784
ORF2: 768..2399
ORF3: 2399..3040

LOCUS       GQ856462                3120 bp    RNA     linear   VRL 05-OCT-2011
DEFINITION  Norovirus Hu/GII.4/Beijing/53671/2007/CHN RNA-dependent RNA
            polymerase gene, partial cds; and capsid and minor structural
            protein genes, complete cds.
ACCESSION   GQ856462
VERSION     GQ856462.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.4/Beijing/53671/2007/CHN
  ORGANISM  Norovirus Hu/GII.4/Beijing/53671/2007/CHN
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3120)
  AUTHORS   Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
            Tan,M., Jiang,T. and Duan,Z.J.
  TITLE     Genetic diversity of noroviruses in Chinese adults: Potential
            recombination hotspots and GII-4/Den Haag-specific mutations at a
            putative epitope
  JOURNAL   Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
   PUBMED   21803173
REFERENCE   2  (bases 1 to 3120)
  AUTHORS   Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
            Jiang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-AUG-2009) Department of Viral Diarrhea, National
            Institute for Viral Disease Control and Prevention, China CDC,
            Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES             Location/Qualifiers
     source          1..3120
                     /organism="Norovirus Hu/GII.4/Beijing/53671/2007/CHN"
                     /mol_type="genomic RNA"
                     /host="Homo sapiens"
                     /db_xref="taxon:679280"
                     /country="China: Beijing"
                     /collection_date="2007"
     CDS             <1..784
                     /note="ORF1"
                     /codon_start=2
                     /product="RNA-dependent RNA polymerase"
                     /protein_id="ACY00614.1"
                     /translation="QNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS
                     VKDGLPSGFPCTSQVNSINHWIMTLCALSEVTGLPPDVIQSQSYFSFYGDDEIVSTDI
                     EFDPAKLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRN
                     SIERQLWWTRGPNHEDPFETLVPHSQRKVQLISLLGEAALHGEKFYRKIASRVIQEVK
                     EGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
     CDS             768..2399
                     /note="ORF2"
                     /codon_start=1
                     /product="capsid"
                     /protein_id="ACY00615.1"
                     /translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA
                     TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG
                     WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV
                     PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL
                     FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ
                     LQDTTTVSAACVARMRGRIFNNNGNYGVNLTELDGNPYHAFDSPAPLGFPDFGNCDLH
                     MTFVKINPNELSSGDPSGKVVIHSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW
                     VSNREGATLNLWAVPNYGSSLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT
                     LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL
                     PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS"
     CDS             2399..3040
                     /note="ORF3"
                     /codon_start=1
                     /product="minor structural protein"
                     /protein_id="ACY00616.1"
                     /translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL
                     SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARMIAGAPPTKVVDWNG
                     VRISAPTSSAITLKSGSFMSVPVMNYKTNKNVTGINNPNYAPSGSSMVSRTSQWVESQ
                     NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK"
ORIGIN      
        1 gcaaaacaga gagattatga tggagtcctt caatatcatg tgcaagctca cagccaatcc
       61 ctccttggct gcggtggtgg ctcaggacct actctcccca tctgagatgg atgttggtga
      121 ttatgtaatc agtgttaaag atggtctgcc atctggcttt ccatgcacct cacaagtcaa
      181 cagcattaac cactggatca tgaccctatg tgcactatca gaggtcactg gcttaccccc
      241 tgatgtaata caatcacaat cctacttctc cttctacggt gatgatgaga tagtctcaac
      301 agacattgaa tttgacccag ctaaattgac acaaatatta aaagagtatg gcctgaaacc
      361 cacaaggccc gataaaactg atggccccat tatagtcagg caacaggtgg atggtctggt
      421 cttccttcgt cgcacaattt cgaaggacgc tattgggtac caaggtcgac ttgaccgcaa
      481 ctccattgaa agacaactct ggtggacccg cggacccaac catgaagacc cgtttgagac
      541 tctggtgcca cactcacaaa gaaaagttca attgatatcc ctactgggtg aggccgccct
      601 acatggtgaa aaattctaca ggaagatagc cagtagggtc atccaagaag ttaaggaagg
      661 gggtctggag atctatatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
      721 cttaagtttg tggacaggag atcgcgatct cttgcccgat tatgtaaatg atgatggcgt
      781 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gtaccagagg
      841 caaatacagc tgaaccttta ccaataaaac cagtggccgg ggctgcgact gcggttgcaa
      901 ccgccggtca ggtaaatatg attgacccct ggataatgaa taattttgta caggctcccc
      961 aaggggagtt taccatttcc ccaaataata cacctggtga tattttattt gatttgcaat
     1021 taggaccaca tcttaatcct ttcttggctc atttgtctag aatgtataat ggttgggttg
     1081 ggaatatgca ggtccgcata atgcttgctg gtaatgcctt ttcagctgga aagattattg
     1141 tgtgctgcat accgccgggt ttttcttctc aatctatttc tattgctcaa gctacaatgt
     1201 tcccacatgt catagctgat gttagagtgt tagaacctat tgatgtaccc ttagatgatg
     1261 ttagaaatgt cctttttcat aataatgata acccccaaac gatgagattg ctttgcatgt
     1321 tgtatacacc ccttcggtct ggtggtacat cttcaggtac agatcctttt gtcattgctg
     1381 gtcgtgtctt gacctgcccc acacctgatt ttagtttctt gttccttgtc cctcctgata
     1441 tcgagcaaag aactaagcca ttcagtgtac ccaatatccc tatgaacctg atgtccaatt
     1501 cccgtgtttc aatgttgatt gatggtatga tggtttcaaa tgatcagaat caagtccccc
     1561 agtttcagaa tggtcgagtc actttagatg gacagctgca ggataccacc acagtttcag
     1621 ctgcgtgtgt agcaaggatg aggggacgca tttttaataa taatggcaat tatggtgtga
     1681 acctgactga actggatggc aatccttatc atgcctttga tagcccggct cctttaggct
     1741 ttcctgactt tgggaattgt gatttgcaca tgacctttgt taaaattaat cccaatgagt
     1801 tgtcctctgg agacccttct ggcaaagtgg tcattcattc ctacgatgcc acttttgccc
     1861 cccatcttgg tactgtcaaa ctggagaatg atgatgagct agctcggttt gtgggtaagg
     1921 aggtagtact ggagctgacg tgggtttcca acagagaggg tgccaccctt aatctatggg
     1981 ctgttccaaa ttatggttcc agtttgacac aggcgtcaca gcttgcccca ccaatttacc
     2041 cccctgggtt tggtgaggct attgtgtatt tcacctctac ttttccaaca gtcagcaacc
     2101 caaaagtccc atgtacactt cctcaagaat ttgtttcaca ttttgtcaat gaacaggccc
     2161 ccacacgcgg cgatgccgct cttcttcatt atgttgatcc tgacacacac cgtaatcttg
     2221 gagagtttaa gatgtaccct gagggctaca tgacatgtgt ccctaatgct ggtggtgggc
     2281 cacaaacctt accaatcaat ggtgtatttg tcttcatttc ttgggtttct agatattacc
     2341 agttaaagcc tgtgggaact gccggtgcgg ctaggaggct tggtcttagg agatcataat
     2401 ggcccaggct gtcttgggag ccattgcagc gactgcagca ggaagtgctg tgggagcagg
     2461 tattgaagct ggcacacagg ccgccctaca acatcaaagg tatcaacagg atttaaatat
     2521 gcagtcccta tcctttcaac atgataaaga aatgttaggc ttacaagtag atgcttctaa
     2581 tgctttattg caaagaaatt tggccacaag atataatttg ctgagtgcag caggcttgtc
     2641 gtctgcagat gctgctagga tgatagcagg tgctccacca actaaagtag tggattggaa
     2701 tggagtcaga atatctgccc ccacatcaag tgcaataacc ctaaaatctg gcagttttat
     2761 gtcagtgcca gtcatgaatt acaaaaccaa caagaatgtg acaggcataa acaacccaaa
     2821 ttatgcaccc agtggctcat caatggttag tcgcaccagc caatgggtgg aatctcaaaa
     2881 ttcattgcgc tcgcttgatc ctttccatag gagcgcgttg caaacaacgt gggttactcc
     2941 tccaggatcc acatctgtgt caacagtgtc aagcacttca acaataccta ggtattttaa
     3001 tactgaaaga cttccgttat tcgcaaatct gcggaagtaa gtttttgtaa tataaagtgg
     3061 gcattatatt cagattggct tttgattata attaatttgg ctgattagaa atttaatgtt
//