Typing tool
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Typing tool
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Complete norovirus genomes
| GQ856462 | GI.8 | |
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| GI.P8 |
ORF1: 1..784
ORF2: 768..2399
ORF3: 2399..3040
LOCUS GQ856462 3120 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/53671/2007/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856462
VERSION GQ856462.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/53671/2007/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/53671/2007/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3120)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3120)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3120
/organism="Norovirus Hu/GII.4/Beijing/53671/2007/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679280"
/geo_loc_name="China: Beijing"
/collection_date="2007"
CDS <1..784
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00614.1"
/translation="QNREIMMESFNIMCKLTANPSLAAVVAQDLLSPSEMDVGDYVIS
VKDGLPSGFPCTSQVNSINHWIMTLCALSEVTGLPPDVIQSQSYFSFYGDDEIVSTDI
EFDPAKLTQILKEYGLKPTRPDKTDGPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRN
SIERQLWWTRGPNHEDPFETLVPHSQRKVQLISLLGEAALHGEKFYRKIASRVIQEVK
EGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLLPDYVNDDGV"
CDS 768..2399
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00615.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA
TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG
WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV
PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL
FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ
LQDTTTVSAACVARMRGRIFNNNGNYGVNLTELDGNPYHAFDSPAPLGFPDFGNCDLH
MTFVKINPNELSSGDPSGKVVIHSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW
VSNREGATLNLWAVPNYGSSLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT
LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL
PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS"
CDS 2399..3040
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00616.1"
/translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL
SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARMIAGAPPTKVVDWNG
VRISAPTSSAITLKSGSFMSVPVMNYKTNKNVTGINNPNYAPSGSSMVSRTSQWVESQ
NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK"
ORIGIN
1 gcaaaacaga gagattatga tggagtcctt caatatcatg tgcaagctca cagccaatcc
61 ctccttggct gcggtggtgg ctcaggacct actctcccca tctgagatgg atgttggtga
121 ttatgtaatc agtgttaaag atggtctgcc atctggcttt ccatgcacct cacaagtcaa
181 cagcattaac cactggatca tgaccctatg tgcactatca gaggtcactg gcttaccccc
241 tgatgtaata caatcacaat cctacttctc cttctacggt gatgatgaga tagtctcaac
301 agacattgaa tttgacccag ctaaattgac acaaatatta aaagagtatg gcctgaaacc
361 cacaaggccc gataaaactg atggccccat tatagtcagg caacaggtgg atggtctggt
421 cttccttcgt cgcacaattt cgaaggacgc tattgggtac caaggtcgac ttgaccgcaa
481 ctccattgaa agacaactct ggtggacccg cggacccaac catgaagacc cgtttgagac
541 tctggtgcca cactcacaaa gaaaagttca attgatatcc ctactgggtg aggccgccct
601 acatggtgaa aaattctaca ggaagatagc cagtagggtc atccaagaag ttaaggaagg
661 gggtctggag atctatatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
721 cttaagtttg tggacaggag atcgcgatct cttgcccgat tatgtaaatg atgatggcgt
781 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gtaccagagg
841 caaatacagc tgaaccttta ccaataaaac cagtggccgg ggctgcgact gcggttgcaa
901 ccgccggtca ggtaaatatg attgacccct ggataatgaa taattttgta caggctcccc
961 aaggggagtt taccatttcc ccaaataata cacctggtga tattttattt gatttgcaat
1021 taggaccaca tcttaatcct ttcttggctc atttgtctag aatgtataat ggttgggttg
1081 ggaatatgca ggtccgcata atgcttgctg gtaatgcctt ttcagctgga aagattattg
1141 tgtgctgcat accgccgggt ttttcttctc aatctatttc tattgctcaa gctacaatgt
1201 tcccacatgt catagctgat gttagagtgt tagaacctat tgatgtaccc ttagatgatg
1261 ttagaaatgt cctttttcat aataatgata acccccaaac gatgagattg ctttgcatgt
1321 tgtatacacc ccttcggtct ggtggtacat cttcaggtac agatcctttt gtcattgctg
1381 gtcgtgtctt gacctgcccc acacctgatt ttagtttctt gttccttgtc cctcctgata
1441 tcgagcaaag aactaagcca ttcagtgtac ccaatatccc tatgaacctg atgtccaatt
1501 cccgtgtttc aatgttgatt gatggtatga tggtttcaaa tgatcagaat caagtccccc
1561 agtttcagaa tggtcgagtc actttagatg gacagctgca ggataccacc acagtttcag
1621 ctgcgtgtgt agcaaggatg aggggacgca tttttaataa taatggcaat tatggtgtga
1681 acctgactga actggatggc aatccttatc atgcctttga tagcccggct cctttaggct
1741 ttcctgactt tgggaattgt gatttgcaca tgacctttgt taaaattaat cccaatgagt
1801 tgtcctctgg agacccttct ggcaaagtgg tcattcattc ctacgatgcc acttttgccc
1861 cccatcttgg tactgtcaaa ctggagaatg atgatgagct agctcggttt gtgggtaagg
1921 aggtagtact ggagctgacg tgggtttcca acagagaggg tgccaccctt aatctatggg
1981 ctgttccaaa ttatggttcc agtttgacac aggcgtcaca gcttgcccca ccaatttacc
2041 cccctgggtt tggtgaggct attgtgtatt tcacctctac ttttccaaca gtcagcaacc
2101 caaaagtccc atgtacactt cctcaagaat ttgtttcaca ttttgtcaat gaacaggccc
2161 ccacacgcgg cgatgccgct cttcttcatt atgttgatcc tgacacacac cgtaatcttg
2221 gagagtttaa gatgtaccct gagggctaca tgacatgtgt ccctaatgct ggtggtgggc
2281 cacaaacctt accaatcaat ggtgtatttg tcttcatttc ttgggtttct agatattacc
2341 agttaaagcc tgtgggaact gccggtgcgg ctaggaggct tggtcttagg agatcataat
2401 ggcccaggct gtcttgggag ccattgcagc gactgcagca ggaagtgctg tgggagcagg
2461 tattgaagct ggcacacagg ccgccctaca acatcaaagg tatcaacagg atttaaatat
2521 gcagtcccta tcctttcaac atgataaaga aatgttaggc ttacaagtag atgcttctaa
2581 tgctttattg caaagaaatt tggccacaag atataatttg ctgagtgcag caggcttgtc
2641 gtctgcagat gctgctagga tgatagcagg tgctccacca actaaagtag tggattggaa
2701 tggagtcaga atatctgccc ccacatcaag tgcaataacc ctaaaatctg gcagttttat
2761 gtcagtgcca gtcatgaatt acaaaaccaa caagaatgtg acaggcataa acaacccaaa
2821 ttatgcaccc agtggctcat caatggttag tcgcaccagc caatgggtgg aatctcaaaa
2881 ttcattgcgc tcgcttgatc ctttccatag gagcgcgttg caaacaacgt gggttactcc
2941 tccaggatcc acatctgtgt caacagtgtc aagcacttca acaataccta ggtattttaa
3001 tactgaaaga cttccgttat tcgcaaatct gcggaagtaa gtttttgtaa tataaagtgg
3061 gcattatatt cagattggct tttgattata attaatttgg ctgattagaa atttaatgtt
//