Typing tool
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Typing tool
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Complete norovirus genomes
| GQ856461 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..811
ORF2: 792..2414
ORF3: 2414..3220
LOCUS GQ856461 3267 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/54667/2007/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856461
VERSION GQ856461.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/54667/2007/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/54667/2007/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3267)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3267)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3267
/organism="Norovirus Hu/GII.4/Beijing/54667/2007/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679293"
/country="China: Beijing"
/collection_date="2007"
CDS <1..811
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00611.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD
DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG
WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPAFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 792..2414
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00612.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFMGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNVPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2414..3220
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00613.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFLRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTDAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 tgattactcc aggtgggatt caacacaaca aagagccgtg ctggcagctg ctctagaaat
61 catggttaaa ttctcctcag aaccacattt ggctcaggta gtagcagaag accttctttc
121 tcctagcgtg gtggatgtgg gtgacttcac aatatcaatc aacgagggtc ttccctctgg
181 ggtgccctgc acctcccaat ggaactccat cgcccactgg ctcctcactc tctgtgcact
241 ctccgaagtt acaaatttgt ccccagacat catacaggct aattctctct tctccttcta
301 tggtgatgat gaaattgtta gtacagacat aaaattagac ccagagaagt tgacagcaaa
361 gcttaaggaa tacgggttga aaccaactcg ccctgataaa actgaaggac ctcttgttat
421 ttctgaagac ttagatggtt tgactttcct gcggagaact gtgacccgcg acccagctgg
481 ttggtttgga aaactggagc agagctcaat actcaggcaa atgtactgga ctaggggccc
541 caaccatgaa gatccatctg aatcaatgat tccacactct caaagaccca tacaattgat
601 gtccttactg ggagaggccg cactccacgg cccagcattc tacagtaaaa tcagcaaatt
661 agtcattgca gagctaaaag aaggtggtat ggatttttac gtgcccaggc aagagccaat
721 gttcagatgg atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc
781 cagttttgtg aatgaagatg gcgtcgaatg acgccaaccc atctgatggg tccgcagcca
841 acctcgtccc agaggtcaac aatgaggtta tggctttgga gcccgttgtc ggtgccgcta
901 ttgcggcgcc tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg
961 tacaagcccc tggtggagag ttcacagtat cccctagaaa cgctccaggt gaaatactat
1021 ggagcgcgcc cttaggccct gatctgaatc cctacctatc tcatttggcc agaatgtata
1081 atggttatgc aggtggtttt gaagtgcagg tgatcctcgc ggggaacgcg ttcaccgccg
1141 gaaaaattat atttgcagca gtcccaccaa attttccaac tgaaggcttg agtcccagcc
1201 aggttactat gttcccccac ataatagtgg atgttaggca attggaacct gtgttgatcc
1261 ccttacctga tgttaggaat aacttctatc actataatca gtcaaatgat tctaccatta
1321 aattgatagc aatgctgtat acaccactta gggctaataa tgctggggaa gatgtcttta
1381 cagtctcttg tcgagttctc acgaggccat cccctgattt tgattttata tttttggtgc
1441 cacctacagt tgagtcaaga actaaaccat ttactgtccc aatcttaact gttgaagaaa
1501 tgaccaattc aagattcccc attcctttgg aaaaattgtt cacgggtccc agcagtgcct
1561 ttgttgttca accacaaaat ggcagatgca cgactgatgg cgtgctctta ggcaccaccc
1621 aactgtctcc tgtcaacatc tgcaccttca gaggggatgt cacccacatt gcaggttctc
1681 gtaattacac aatgaatttg gcttctctaa attggaacaa ttatgaccca acagaagaaa
1741 ttccagcccc tctaggaact ccagatttca tgggaaagat ccaaggtgtg ctcactcaaa
1801 ccacaaaggg agatggctcg acccgtggcc ataaagctac agtttacact gggagtgccc
1861 cctttactcc aaagctgggc agtgttcaat tcagtactga tacagaaaat gattttgaaa
1921 cccaccaaaa cacaaaattc accccagtcg gtgtcatcca ggatggtggc accacccacc
1981 gaaatgaacc ccaacaatgg gtgctcccaa gttattcagg tagaaatgtc cctaatgtac
2041 acctagcccc tgctgtagcc cccacttttc cgggtgaaca acttcttttc tttaggtcca
2101 ctatgcccgg atgcagcggg tatcccaaca tggatttgga ttgcctactc ccccaggagt
2161 gggtgcagca cttctaccaa gaggcagctc cagcacaatc tgatgtggct ctattgagat
2221 ttgtgaatcc agacacgggt agggtcctgt ttgagtgcaa acttcataaa tcaggctatg
2281 tcacagtggc tcacaccggc cagcatgatt tggtcatccc ccccaatggt tattttaggt
2341 ttgattcctg ggttaatcaa ttctacacac ttgcccccat gggaaatgga acggggcgta
2401 gacgtgcttt ataatggctg gagctttctt tgctggattg gcatctgatg tccttagctc
2461 tggacttggt tccctaatca atgctggggc tggggctatc aaccaaaaga ttgattttga
2521 aaataacaga aaattgcagc aagcttcctt ccagtttagt agtaatctac aacaggcttc
2581 ctttcaacat gataaagaga tgctccaagc acaaattgag gccactaaaa agttgcaaca
2641 ggaaatgatg aaagtcaaac aggcaatgct cttagaaggt ggattctctg aaacagatgc
2701 agcccgtggg gcaatcaacg cccctatgac aaaggctttg gactggagcg gaacaaggta
2761 ctgggcccct gatgctagga ctacaacata caatgcaggc cgtttttcca cccctcaacc
2821 ttcgggggca ctgccaggaa gaatcaatcc caggactcct acccccgctc ggggttcccc
2881 cagcacatct tctaatgctt ctactgctac ttctatatat tcaaatcaaa ctgtttcaac
2941 gagacttggt tctacagctg gttctggcac caatgtctcg agtctcccat caactgcaag
3001 gactaggagt tgggttgagg atcaaaacag aaatttgtca cctttcttga ggggggctca
3061 caacatatcg tttgtcaccc caccatctag cagatcctct agccagggca cagtctcaac
3121 cgtgcctaaa gaagttttgg actcctggac tgacgctttc aacacgcgca ggcagcctct
3181 cttcgctcac attcgtaggc gaggggagtc acgggtgtaa cgtgaaaaga caaaattgat
3241 tatctttccc tttctttagt gtctttt
//