Typing tool
|
Complete norovirus genomes
GQ856459 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..811 ORF2: 792..2414 ORF3: 2414..3220LOCUS GQ856459 3267 bp RNA linear VRL 05-OCT-2011 DEFINITION Norovirus Hu/GII.4/Beijing/55176/2008/CHN RNA-dependent RNA polymerase gene, partial cds; and capsid and minor structural protein genes, complete cds. ACCESSION GQ856459 VERSION GQ856459.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Beijing/55176/2008/CHN ORGANISM Norovirus Hu/GII.4/Beijing/55176/2008/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3267) AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N., Tan,M., Jiang,T. and Duan,Z.J. TITLE Genetic diversity of noroviruses in Chinese adults: Potential recombination hotspots and GII-4/Den Haag-specific mutations at a putative epitope JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011) PUBMED 21803173 REFERENCE 2 (bases 1 to 3267) AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and Jiang,T. TITLE Direct Submission JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National Institute for Viral Disease Control and Prevention, China CDC, Ying-Xin St., Xuan-Wu District, Beijing 100052, China FEATURES Location/Qualifiers source 1..3267 /organism="Norovirus Hu/GII.4/Beijing/55176/2008/CHN" /mol_type="genomic RNA" /host="Homo sapiens" /db_xref="taxon:679308" /country="China: Beijing" /collection_date="2008" CDS <1..811 /note="ORF1" /codon_start=2 /product="RNA-dependent RNA polymerase" /protein_id="ACY00605.1" /translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKIS KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 792..2414 /note="ORF2" /codon_start=1 /product="capsid" /protein_id="ACY00606.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQMILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNVPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHGLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2414..3220 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="ACY00607.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 tgattactcc aggtgggact caacacaaca aagagccgtg ctggcagctg ctctagaaat 61 catggttaaa ttctcctcag aaccacattt ggctcaggta gtagcagaag accttctttc 121 tcctagcgtg gtggatgtgg gtgacttcac aatatcaatc aacgagggtc ttccctctgg 181 ggtgccctgc acctcccaat ggaactccat cgcccactgg ctcctcactc tctgtgcact 241 ctccgaagtt acaaatttgt ccccagacat catacaggct aattctctct tctccttcta 301 tggtgatgat gaaattgtta gtacagacat aaaattagac ccagagaagt tgacagcaaa 361 gcttaaggaa tacgggttga aaccaactcg ccctgataaa actgaaggac ctcttgttat 421 ttctgaagac ttagatggtt tgactttcct gcggagaact gtgacccgcg acccagctgg 481 ttggtttgga aaactggagc agagctcaat actcaggcaa atgtactgga ctaggggccc 541 caaccatgaa gatccatctg aatcaatgat tccacactct caaagaccca tacaattgat 601 gtccttactg ggagaggccg cactccacgg cccaacattc tacagtaaaa tcagcaaatt 661 agtcattgca gagctaaaag aaggtggtat ggatttttac gtgcccaggc aagagccaat 721 gttcagatgg atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc 781 cagttttgtg aatgaagatg gcgtcgaatg acgccaaccc atctgatggg tccgcagcca 841 acctcgtccc agaggtcaac aatgaggtta tggctttgga gcccgttgtc ggtgccgcta 901 ttgcggcgcc tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg 961 tacaagcccc tggtggagag ttcacagtat cccctagaaa cgctccaggt gaaatactat 1021 ggagcgcgcc cttaggccct gatctgaatc cctacctatc tcatttggcc agaatgtata 1081 atggttatgc aggtggtttt gaagtgcaga tgatcctcgc ggggaacgcg ttcaccgccg 1141 gaaaaattat atttgcagca gtcccaccaa attttccaac tgaaggcttg agtcccagcc 1201 aggtcactat gttcccccac ataatagtgg atgttaggca attggaacct gtgttgatcc 1261 ccttacctga tgttaggaat aacttctatc actataatca gtcaaatgat tctaccatta 1321 aattgatagc aatgctgtat acaccactta gggctaataa tgctggggaa gatgtcttta 1381 cagtctcttg tcgagttctc acgaggccat cccctgattt tgattttata tttttggtgc 1441 cacctacagt tgagtcaaga accaaaccat ttactgtccc aatcttaacc gttgaagaaa 1501 tgaccaattc aagattcccc attcctttgg aaaaattgtt cacgggtccc agcagtgcct 1561 ttgttgttca accacaaaat ggcagatgca cgactgatgg cgtgctctta ggcaccaccc 1621 aactgtctcc tgtcaacatc tgcaccttca gaggggatgt cactcacatt gcaggttctc 1681 gtaattacac aatgaatttg gcttctctaa attggaacaa ttatgaccca acagaagaaa 1741 ttccagcccc tctaggaact ccagatttcg tgggaaagat ccaaggtgtg ctcactcaaa 1801 ccacaaaggg agatggctcg acccgtggcc ataaagctac agtttacact gggagtgccc 1861 cctttactcc aaagctgggc agtgttcaat tcagtaccga tacagaaaat gattttgaaa 1921 ctcaccaaaa cacaaaattc accccagtcg gtgtcatcca ggatggtggc accacccacc 1981 gaaatgaacc ccaacaatgg gtgctcccaa gttattcagg tagaaatgtc cctaatgtac 2041 acctagcccc tgctgtagcc cccacttttc cgggtgaaca acttcttttc tttaggtcca 2101 ctatgcccgg atgcagcggg tatcccaaca tggatttgga ttgcctactc ccccaggagt 2161 gggtgcagca cttctaccaa gaggcagctc cagcacaatc tgatgtggct ctattgagat 2221 ttgtgaatcc agacacgggt agggtcctgt ttgagtgcaa acttcataaa tcaggctatg 2281 tcacagtggc tcacaccggc cagcatggtt tggtcatccc ccccaatggt tattttaggt 2341 ttgattcctg ggttaatcaa ttctacacac ttgcccccat gggaaatgga acggggcgta 2401 gacgtgcttt ataatggctg gagctttctt tgctggattg gcatctgatg tccttagctc 2461 tggacttggt tccctaatca atgctggggc tggggctatc aaccaaaaga ttgactttga 2521 aaataacaga aaattgcagc aagcttcctt ccagtttagc agtaatctac aacaggcttc 2581 ctttcaacat gataaagaga tgctccaagc acaaattgag gccactaaaa agttgcaaca 2641 ggaaatgatg aaagtcaaac aggcaatgct cttagaaggt ggattctctg aaacagatgc 2701 agcccgtggg gcaatcaacg cccctatgac aaaggctttg gactggagcg gaacaaggta 2761 ctgggcccct gatgctagga ctacaacata caatgcaggc cgtttttcca cccctcaacc 2821 ttcgggggca ctgccaggaa gaatcaatcc caggactcct acccccgctc ggggctcccc 2881 cagcacatct tctaatgctt ctactgctac ttctatatat tcaaatcaaa ctgtttcaac 2941 gagacttggt tctacagctg gttctggcac caatgtctcg agtctcccgt caactgcaag 3001 gactaggagt tgggttgagg atcaaaacag aaatttgtca cctttcatga ggggggctca 3061 caacatatcg tttgtcaccc caccatctag cagatcctct agccaaggca cagtctcaac 3121 cgtgcctaaa gaagttttgg actcctggac tggcgctttc aacacgcgca ggcagcctct 3181 cttcgctcac attcgtaggc gaggggagtc acgggtgtaa cgtgaaaaga caaaattgat 3241 tacctttccc tttctttagt gtctttt //