Typing tool
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Typing tool
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Complete norovirus genomes
| GQ856457 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..811
ORF2: 792..2414
ORF3: 2414..3220
LOCUS GQ856457 3267 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/55150/2008/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856457
VERSION GQ856457.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/55150/2008/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/55150/2008/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3267)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3267)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3267
/organism="Norovirus Hu/GII.4/Beijing/55150/2008/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679303"
/country="China: Beijing"
/collection_date="2008"
CDS <1..811
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00599.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVM
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD
DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG
WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 792..2414
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00600.1"
/translation="MKMASNDANPSDGPAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSSNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTQNDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSRYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2414..3220
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00601.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKVLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS
NVSTATSIYSNQTFSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRTRGESRV"
ORIGIN
1 tgattactcc aggtgggatt caacacaaca gagagccgtg ctggcagctg ctctagaaat
61 catggttaaa ttctcctcag aaccacattt ggctcaggta gtagcagaag accttctttc
121 tcctagcgtg atggatgtgg gtgacttcac aatatcaatc aacgagggtc ttccctctgg
181 ggtgccctgc acctcccaat ggaactccat cgcccactgg cttctcactc tctgtgcact
241 ctccgaagtt acaaatttgt ccccagatat catacaggct aattctctct tttccttcta
301 tggtgatgat gaaattgtta gtacagacat aaaattagac ccagagaagt tgacagcaaa
361 gcttaaggaa tacgggttga aaccaacccg ccctgataaa actgaaggac ctcttgttat
421 ttctgaagac ttagatggct tgactttcct gcggagaact gtgacccgcg acccagctgg
481 ttggtttgga aaactggagc agagctcaat actcaggcaa atgtactgga ctaggggtcc
541 caaccatgaa gatccatctg aatcaatgat tccacactct caaagaccca tacaattgat
601 gtccttactg ggagaggccg cactccatgg cccaacattc tacagtaaaa tcagcaaatt
661 agtcattgca gagctaaaag aaggtggtat ggatttttac gtgcccaggc aagagccaat
721 gttcagatgg atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc
781 cagttttgtg aatgaagatg gcgtcgaatg acgccaaccc atctgatggg cccgcagcca
841 acctcgtccc agaggtcaac aatgaggtta tggctttgga gcccgttgtc ggtgccgcta
901 ttgcggcgcc tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg
961 tacaagcccc tggtggagag ttcacagtat cccctagaaa cgctccaggt gaaatactat
1021 ggagcgcgcc cttaggccct gatctgaatc cctacctatc tcatttggcc agaatgtata
1081 atggttatgc aggtggtttt gaagtgcagg tgatcctcgc ggggaacgcg ttcaccgccg
1141 gaaaaattat atttgcagca gtcccaccaa attttccaac tgaaggcttg agccccagcc
1201 aggtcactat gttcccccat ataatagtgg atgttaggca attggaacct gtgttgatcc
1261 ccttacctga tgttaggaat aatttctatc actataatca gtcaaatgat tctaccatta
1321 aattgatagc aatgctatat acaccactta gggctaataa tgctggggaa gatgtcttca
1381 cagtctcttg tcgagttctc acgaggccat cccctgattt tgattttata tttttggtgc
1441 cacctacagt tgagtcaaga actaaaccat ttactgtccc aatcttaact gttgaagaaa
1501 tgaccaattc aagattcccc attcctttgg aaaaattgtt cacgggtccc agcagtgcct
1561 ttgttgttca accacaaaat ggcagatgca cgactgatgg cgtgctctta ggcaccaccc
1621 aactgtctcc tgttaacatc tgcaccttca gaggggatgt cacccacatt gcaggttcta
1681 gtaattacac aatgaatttg gcttctctaa attggaacaa ttatgaccca acagaagaaa
1741 ttccagcccc tctaggaact ccagattttg tgggaaagat ccaaggtgtg ctcacccaaa
1801 ccacaaaggg agatggttcg acccgtggcc ataaagctac agtttacact gggagtgccc
1861 cctttactcc aaagttgggc agtgttcagt tcagtactga tacacaaaat gattttgaaa
1921 cccaccaaaa cacaaaattc accccagtcg gtgtcatcca ggatggtggc accacccacc
1981 gaaatgaacc ccaacaatgg gtgctcccaa gttattcagg tagaaatgtc caaaatgtac
2041 acctagcccc tgctgtagcc cccacttttc cgggtgaaca acttcttttc tttaggtcca
2101 ctatgcccgg atgcagcggg tatcccaaca tggatttgga ttgcctactc ccccaggagt
2161 gggtgcagca cttctaccaa gaggcagccc cagcacaatc tgatgtggct ctattgagat
2221 ttgtgaatcc agacacgggt agggtcctgt ttgagtgcaa acttcataaa tcacgctatg
2281 tcacagtagc tcacaccggc cagcatgatt tggtcatccc ccccaatggt tattttaggt
2341 ttgattcctg ggttaaccaa ttctacacac ttgcccccat gggaaatgga acggggcgta
2401 gacgtgcttt ataatggctg gggctttctt tgctggattg gcatctgatg tccttagctc
2461 tgggcttggt tccctaatca atgctggggc tggggctatc aaccaaaaga ttgattttga
2521 aaataacaga aaattgcagc aagcttcctt ccagtttagc agtaatctac aacaggcttc
2581 ctttcaacat gataaagaga tgctccaagc acaaattgag gccactaaaa agttgcaaca
2641 ggaaatgatg aaagtcaaac aggcaatgct cttagaaggt ggattctctg aaacagatgc
2701 agcccgtggg gcaatcaatg cccctatgac aaaggttttg gactggagcg gaacaaggta
2761 ctgggcccct gatgctagga ctacaacata taatgcaggt cgtttttcca cccctcaacc
2821 ttcgggggca ctgccaggaa gaatcaatcc caggactcct acccctgctc ggggctcccc
2881 cagcacatct tctaatgttt ctactgctac ttctatatat tcaaatcaaa ctttttcaac
2941 gagacttggt tctacagctg gttctggcac caatgtctcg agcctcccgt caactgcaag
3001 gactaggagt tgggttgagg atcaaaacag aaacttgtca cctttcatga ggggggctca
3061 caacatatcg ttcgtcaccc caccatctag cagatcctcc agccaaggca cagtctcaac
3121 cgtgcctaaa gaagttttgg actcctggac tggcgctttc aacacgcgca ggcagccgct
3181 cttcgcccac attcgtacgc gaggggagtc acgggtgtaa tgtgaaaaga caaaattgat
3241 tatctttccc tttctttagt gcctttt
//