Typing tool
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Typing tool
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Complete norovirus genomes
| GQ856452 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..811
ORF2: 792..2414
ORF3: 2414..3220
LOCUS GQ856452 3267 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/54665/2007/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856452
VERSION GQ856452.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/54665/2007/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/54665/2007/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3267)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3267)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3267
/organism="Norovirus Hu/GII.4/Beijing/54665/2007/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679292"
/country="China: Beijing"
/collection_date="2007"
CDS <1..811
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00584.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD
DEIVSTDIKLDPERLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG
WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 792..2414
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00585.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2414..3220
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00586.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSISS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHICRRGESRV"
ORIGIN
1 tgattactcc aggtgggatt caacacaaca gagagccgtg ctggcagctg ctctagaaat
61 catggttaaa ttctcctcag aaccacattt ggctcaggta gtagcagaag accttctttc
121 tcctagcgtg gtggatgtgg gtgacttcac aatatcaatc aacgagggcc ttccctctgg
181 ggtgccctgc acctcccaat ggaactccat cgcccactgg cttctcactc tctgtgcact
241 ctccgaagtt acaaatttgt ccccagacat catacaggct aattctctct tctccttcta
301 tggtgacgat gaaattgtta gtacagacat aaaattagac ccagagaggt tgacagcaaa
361 gcttaaggaa tacgggttga aaccaactcg ccctgataaa actgaaggac ctcttgttat
421 ttctgaagac ctagatggtt tgactttcct gcggagaact gtgacccgcg acccagctgg
481 ttggtttgga aaactggagc agagctcaat actcaggcaa atgtactgga ctaggggccc
541 caaccatgaa gatccatctg aatcaatgat tccacactct caaagaccca tacaattgat
601 gtccttgctg ggagaggccg cactccacgg cccaacattc tacagtaaaa tcagcaaatt
661 agtcattgca gagctaaaag aaggtggtat ggatttttac gtgcccaggc aagagccaat
721 gttcagatgg atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc
781 cagttttgtg aatgaagatg gcgtcgaatg acgccaaccc atctgatggg tccgcagcca
841 acctcgtccc agaggtcaac aatgaggtta tggctttgga gcccgttgtc ggtgccgcta
901 ttgcggcgcc tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg
961 tacaagcccc tggtggagag ttcacagtat cccctagaaa cgctccaggt gaaatactat
1021 ggagcgcgcc cttaggccct gatctgaatc cctacctatc tcatttggcc agaatgtata
1081 atggttatgc aggtggtttt gaagtgcagg tgatcctcgc ggggaacgcg ttcaccgccg
1141 gaaaaattat atttgcagca gtcccaccaa attttccaac tgaaggcttg agtcccagcc
1201 aggtcactat gttcccccac ataatagtgg atgttaggca attggaacct gtgttgatcc
1261 ccttacccga tgttaggaat aacttctatc attataatca gtcaaatgat tctaccatta
1321 aattgatagc aatgctgtat acaccactta gggctaataa tgctggggaa gatgtcttca
1381 cagtctcttg tcgagtactc acgaggccat cccctgattt tgattttata tttttggtgc
1441 cacctacagt tgagtcaaga actaaaccat ttactgtccc aatcttaact gttgaagaaa
1501 tgaccaattc aagattcccc attcctttgg aaaaattgtt cacgggtccc agcagtgcct
1561 tcgttgttca accacaaaat ggcaggtgca cgactgatgg cgtgctctta ggcaccaccc
1621 aactgtctcc tgtcaacatc tgcactttta gaggggatgt cacccacatt gcaggttctc
1681 gcaattatac aatgaatttg gcttccctaa attggaacaa ttatgaccca acagaagaaa
1741 ttccagcccc tctaggaact ccagatttcg tgggaaagat ccaaggtgtg ctcactcaaa
1801 ccacaaaggg agatggttcg acccgtggcc ataaagctac agtttacact gggagtgccc
1861 cctttactcc aaagctgggc agtgttcaat tcagtactga tacagaaaat gattttgaaa
1921 ctcaccaaaa cacaaaattc accccagtcg gtgtcatcca ggatggtggt accacccacc
1981 gaaatgaacc ccaacaatgg gtgctcccaa gttattcagg tagaaatgtc cataatgtac
2041 acctagcccc tgctgtagcc cccacttttc cgggtgaaca acttcttttc tttaggtcta
2101 ctatgcccgg atgcagcggg tatcccaaca tggatttgga ttgcctactc ccccaggagt
2161 gggtgcagca cttctatcaa gaggcagctc cagcacagtc tgatgtggct ctattgagat
2221 ttgtgaatcc agacacgggt agggtcctgt ttgagtgcaa acttcataaa tcaggctacg
2281 tcacagtggc tcacaccggc cagcatgatt tggtcatccc ccccaatggt tattttaggt
2341 ttgattcctg ggttaatcaa ttctacacac ttgcccccat gggaaatgga acggggcgta
2401 gacgtgcttt ataatggctg gagctttctt tgctggattg gcatctgatg tccttggctc
2461 tggacttggt tccctaatca atgctggggc tggggctatc aaccaaaaga ttgattttga
2521 aaataacaga aaattgcagc aagcttcctt ccaatttagc agtaatctac aacaggcttc
2581 ctttcaacat gataaagaga tgctccaagc acaaattgag gccactaaaa ggttgcaaca
2641 ggagatgatg aaagttaaac aggcaatgct cttagaaggt ggattctctg aaacagatgc
2701 agcccgtggg gcaatcaacg cccctatgac taaggctttg gactggagcg gaacaaggta
2761 ctgggcccct gatgctagga ctacaacata caatgcaggc cgtttttcca cccctcaacc
2821 ttcgggggca ctgccaggaa gaatcaatcc taggactcct acccccgctc ggggctcccc
2881 cagcatatct tctaatgctt ctactgctac ttctatatat tcaaatcaaa ctgtttcaac
2941 gagacttggt tctacagctg gttctggcac caatgtctcg agtctcccgt caactgcaag
3001 gactaggagt tgggttgagg atcaaaacag aaatttgtcc cctttcatga ggggggctca
3061 caacatatcg tttgtcaccc ccccatctag cagatcctct agccaaggca cagtttcaac
3121 cgtgcctaaa gaagttttgg actcctggac tggcgctttc aacacgcgca ggcagcctct
3181 tttcgctcac atttgtaggc gaggggagtc acgggtgtaa tgtgaaaaga caaaattgat
3241 tatctttcct tttctttagt gtctttt
//