Typing tool
|
Complete norovirus genomes
GQ856451 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..811 ORF2: 792..2414 ORF3: 2414..3220LOCUS GQ856451 3267 bp RNA linear VRL 05-OCT-2011 DEFINITION Norovirus Hu/GII.4/Beijing/54651/2007/CHN RNA-dependent RNA polymerase gene, partial cds; and capsid and minor structural protein genes, complete cds. ACCESSION GQ856451 VERSION GQ856451.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Beijing/54651/2007/CHN ORGANISM Norovirus Hu/GII.4/Beijing/54651/2007/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3267) AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N., Tan,M., Jiang,T. and Duan,Z.J. TITLE Genetic diversity of noroviruses in Chinese adults: Potential recombination hotspots and GII-4/Den Haag-specific mutations at a putative epitope JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011) PUBMED 21803173 REFERENCE 2 (bases 1 to 3267) AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and Jiang,T. TITLE Direct Submission JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National Institute for Viral Disease Control and Prevention, China CDC, Ying-Xin St., Xuan-Wu District, Beijing 100052, China FEATURES Location/Qualifiers source 1..3267 /organism="Norovirus Hu/GII.4/Beijing/54651/2007/CHN" /mol_type="genomic RNA" /host="Homo sapiens" /db_xref="taxon:679290" /country="China: Beijing" /collection_date="2007" CDS <1..811 /note="ORF1" /codon_start=2 /product="RNA-dependent RNA polymerase" /protein_id="ACY00581.1" /translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKIS KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 792..2414 /note="ORF2" /codon_start=1 /product="capsid" /protein_id="ACY00582.1" /translation="MKMASNDANPSDGSVANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHMIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRADNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESKTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYSRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2414..3220 /note="ORF3" /codon_start=1 /product="minor structural protein" /protein_id="ACY00583.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARITTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSISS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRRRGESRA" ORIGIN 1 tgattactcc aggtgggatt caacacaaca gagagccgtg ctggcagctg ctctagaaat 61 catggttaaa ttctcctcag aaccacattt ggctcaggta gtagcagaag accttctttc 121 tcctagcgtg gtggatgtgg gtgacttcac aatatcaatc aacgagggtc ttccctctgg 181 ggtgccctgc acctcccaat ggaactccat cgcccactgg cttctcactc tctgtgcact 241 ctccgaagtt acaaatttgt ccccagacat catacaggct aattctcttt tctccttcta 301 tggtgatgat gaaattgtta gtacagacat aaaattagac ccagagaagc tgacagcaaa 361 gcttaaggaa tacgggttga aaccaacccg ccctgataaa actgaaggac ctcttgttat 421 ttctgaagac ttagatggtt tgactttcct gcggagaact gtgacccgcg acccagctgg 481 ttggtttgga aaactggagc agagctcaat actcaggcaa atgtactgga ctaggggccc 541 caaccatgaa gatccatctg aatcaatgat tccacactct caaagaccca tacaattgat 601 gtccttactg ggagaggccg cactccacgg cccaacattc tacagtaaaa tcagcaaatt 661 agtcattgca gagctaaaag aaggtggtat ggatttttac gtgcccaggc aagagccaat 721 gttcagatgg atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc 781 cagttttgtg aatgaagatg gcgtcgaatg acgccaaccc atctgatggg tccgtagcca 841 acctcgtccc agaggtcaac aatgaggtta tggctttgga gcccgttgtc ggtgccgcta 901 ttgcggcgcc tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg 961 tacaagcccc tggtggagag ttcacagtat cccctagaaa cgctccaggt gaaatactat 1021 ggagcgcgcc cttaggccct gacctgaatc cctacctatc tcatttggct agaatgtata 1081 atggttatgc aggtggtttt gaagtgcagg tgatcctcgc ggggaacgcg ttcaccgccg 1141 gaaaaattat atttgcagca gtcccaccaa attttccaac tgaaggcttg agtcccagcc 1201 aggtcactat gttcccccat atgatagtgg atgttaggca attggaacct gtgttgatcc 1261 ccttacctga tgttaggaat aacttctatc actataatca gtcaaatgat tctactatta 1321 aattgatagc aatgctgtat acaccactta gggctgataa tgctggggaa gatgtcttca 1381 cagtctcttg tcgagttctc acgaggccat cccctgattt tgattttata tttttggtgc 1441 cacctacagt tgagtcaaaa actaaaccat ttactgtccc aatcttaact gttgaagaaa 1501 tgaccaattc aagattcccc attcccttgg aaaaattgtt cacgggtccc agcagtacct 1561 ttgttgttca accacaaaat ggcagatgca cgactgatgg cgtgctctta ggcaccaccc 1621 aactgtctcc tgtcaacatc tgcaccttca gaggggatgt cacccacatt gcaggttctc 1681 gtaactatac aatgaatttg gcttctctaa attggaacaa ttatgaccca acagaagaaa 1741 ttccagcccc tctaggaact ccagatttcg tgggaaagat ccaaggtgtg cttactcaaa 1801 ccacaaaggg agacggttcg acccgtggcc ataaagctac agtttacact gggagtgccc 1861 cctttactcc aaagctgggc agtgttcaat tcagtactga tacagaaaat gattttgaaa 1921 ctcaccaaaa tacaaaattc accccagtcg gtgtcatcca ggatggtagc accacccacc 1981 gaaatgaacc ccaacaatgg gtgctcccaa gttattcagg tagaaatgtc cataatgtac 2041 acttagcccc tgctgtagcc cccacttttc cgggtgaaca acttctcttc tttaggtcca 2101 ctatgcccgg atgcagcggg tatcccaaca tggatttgga ttgcctactc ccccaggagt 2161 gggtgcagca tttctaccaa gaggcagctc cagcacaatc tgatgtggct ctattgagat 2221 ttgtgaatcc agacacgggt agggtcctgt ttgaatgcaa acttcataaa tcaggctatg 2281 tcacagtggc tcacaccggc cagcatgatt tggtcatccc ccccaatggt tattctaggt 2341 ttgattcctg ggttaatcaa ttctacacac ttgcccccat gggaaatgga acggggcgta 2401 gacgtgcttt ataatggctg gggctttctt tgctggattg gcatctgatg tccttagctc 2461 tgggcttggt tccctaatca atgctggggc tggggctatc aaccaaaaga ttgattttga 2521 aaataacaga aaattgcagc aagcttcctt ccagtttagc agtaatctac aacaggcttc 2581 ctttcaacat gataaagaga tgctccaggc acaaattgag gccactaaaa agttgcaaca 2641 ggaaatgatg aaagtcaaac aggcaatgct cttagaaggt ggattctctg aaacagatgc 2701 agcccgtggg gcaatcaacg cccctatgac aaaggctctg gactggagcg gaacaaggta 2761 ctgggcccct gatgctagga ttacaacata caatgcaggc cgtttttcca cccctcaacc 2821 ttcgggggca ctgccaggaa gaatcaatcc caggacccct acccccgctc ggggctcccc 2881 cagcatatct tctaatgctt ctactgctac ttctatatat tcaaatcaaa ctgtttcaac 2941 gagacttggt tctacagctg gttctggcac caatgtctcg agcctcccgt caactgcaag 3001 gactaggagt tgggttgagg atcaaaacag aaatttgtca cctttcatga ggggggctca 3061 caacatatcg tttgtcaccc caccatctag cagatcctct agccaaggca cagtctcaac 3121 cgtgcctaaa gaaattttgg actcctggac tggcgctttc aacacgcgca ggcagcctct 3181 cttcgctcac attcgtaggc gaggggagtc acgggcgtaa tgtgaaaaga caaaattgat 3241 tatctttccc tttctttagt gtctttt //