Typing tool
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Typing tool
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Complete norovirus genomes
| GQ856449 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..811
ORF2: 792..2414
ORF3: 2414..3220
LOCUS GQ856449 3267 bp RNA linear VRL 05-OCT-2011
DEFINITION Norovirus Hu/GII.4/Beijing/54125/2007/CHN RNA-dependent RNA
polymerase gene, partial cds; and capsid and minor structural
protein genes, complete cds.
ACCESSION GQ856449
VERSION GQ856449.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Beijing/54125/2007/CHN
ORGANISM Norovirus Hu/GII.4/Beijing/54125/2007/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3267)
AUTHORS Jin,M., Chen,J., Zhang,X.H., Zhang,M., Li,H.Y., Cheng,W.X., Liu,N.,
Tan,M., Jiang,T. and Duan,Z.J.
TITLE Genetic diversity of noroviruses in Chinese adults: Potential
recombination hotspots and GII-4/Den Haag-specific mutations at a
putative epitope
JOURNAL Infect. Genet. Evol. 11 (7), 1716-1726 (2011)
PUBMED 21803173
REFERENCE 2 (bases 1 to 3267)
AUTHORS Jin,M., Chen,J., Zhang,X.-H., Li,H.-Y., Liu,N., Duan,Z.-J. and
Jiang,T.
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2009) Department of Viral Diarrhea, National
Institute for Viral Disease Control and Prevention, China CDC,
Ying-Xin St., Xuan-Wu District, Beijing 100052, China
FEATURES Location/Qualifiers
source 1..3267
/organism="Norovirus Hu/GII.4/Beijing/54125/2007/CHN"
/mol_type="genomic RNA"
/host="Homo sapiens"
/db_xref="taxon:679288"
/country="China: Beijing"
/collection_date="2007"
CDS <1..811
/note="ORF1"
/codon_start=2
/product="RNA-dependent RNA polymerase"
/protein_id="ACY00575.1"
/translation="DYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVV
DVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGD
DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAG
WFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKIS
KLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 792..2414
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="ACY00576.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGTHNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGGNVQNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYSRFDPWVNQFYTLAPMGNGTGRRRAL"
CDS 2414..3220
/note="ORF3"
/codon_start=1
/product="minor structural protein"
/protein_id="ACY00577.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPPGALPGRINPRTPTPARGSPSISS
NASTATPIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWAGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 tgattactcc aggtgggatt caacacaaca gagagccgtg ctggcagctg ctctagaaat
61 catggttaaa ttctcctcag aaccacattt ggctcaggta gtagcagaag accttctttc
121 tcctagcgtg gtggatgtgg gtgacttcac aatatcaatc aacgagggtc ttccctctgg
181 ggtgccctgc acctcccaat ggaactccat cgcccactgg cttctcactc tctgtgcact
241 ctccgaagtt acaaatttgt ccccagacat catacaggct aattctctct tctccttcta
301 tggtgatgat gaaattgtta gtacagacat aaaattagac ccagagaagt tgacagcaaa
361 gcttaaggaa tacgggttga aaccaacccg ccctgataaa actgaaggac ctcttgttat
421 ttctgaggac ttagatggtt tgactttcct gcggagaact gtgacccgcg acccagctgg
481 ttggtttggg aaactggagc agagctcaat actcaggcaa atgtactgga ctaggggccc
541 caaccatgaa gatccatctg aatcaatgat tccacactct caaagaccca tacaattgat
601 gtccttactg ggagaggccg cactccacgg cccaacattc tacagtaaaa tcagcaaatt
661 agtcattgca gagctaaaag aaggtggtat ggatttttac gtgcccagac aagagccaat
721 gttcagatgg atgagattct cagatctgag cacgtgggag ggcgatcgca atctggctcc
781 cagttttgtg aatgaagatg gcgtcgaatg acgccaaccc atctgatggg tccgcagcca
841 acctcgtccc agaggtcaac aatgaggtta tggctttgga gcccgttgtc ggtgccgcta
901 ttgcggcgcc tgtagcgggc caacaaaatg taattgaccc ctggattaga aataattttg
961 tacaagcccc tggtggagag ttcacagtat cccctagaaa cgctccaggt gaaatactat
1021 ggagcgcgcc cttgggccct gatctgaatc cctacctatc tcatttggcc agaatgtata
1081 atggttatgc aggtggtttt gaagtgcagg tgatcctcgc ggggaacgcg ttcaccgccg
1141 gaaaaattat atttgcagca gtcccaccaa attttccaac tgaaggcttg agtcccagcc
1201 aggtcactat gtttccccac ataatagtgg atgttaggca attggaacct gtgttgatcc
1261 ccttacctga tgttaggaat aacttctatc actataatca gtcaaatgat tctaccatta
1321 aattgatagc aatgctgtat acaccactta gggctaataa tgctggggaa gatgtcttca
1381 cagtctcttg tcgagttctc acgaggccat cccctgattt tgattttata tttctggtgc
1441 cacctacagt tgagtcaaga actaaaccat ttactgtccc aatcttaact gttgaagaaa
1501 tgaccaattc aagattcccc attcctttgg aaaaattgtt cacgggtccc agcagtgcct
1561 ttgttgttca accacaaaat ggcagatgca cgactgatgg cgtgctctta ggcaccaccc
1621 aactgtctcc tgtcaacatc tgcaccttca gaggggatgt cacccacatt gcaggtactc
1681 ataactacac aatgaatttg gcttctctaa attggaacaa ttacgaccca acagaagaaa
1741 ttccagcccc tctaggaact ccagatttcg tgggaaagat ccaaggtgtg ctcactcaaa
1801 ccacaaaggg agatggctcg acccgtggcc ataaagctac agtttacact gggagtgccc
1861 cctttactcc aaagctgggc agtgttcaat tcagtactga tacagaaaat gattttgaaa
1921 ctcaccaaaa cacaaaattc accccggtcg gtgtcatcca ggatggtagc accacccacc
1981 gaaatgaacc ccaacaatgg gtgctcccaa gttattcagg tggaaatgtc caaaatgtac
2041 acctagcccc tgctgtagcc cccacttttc cgggtgaaca acttcttttc tttaggtcca
2101 ctatgcccgg atgcagcggg tatcccaaca tggatttgga ttgcctactc ccccaggagt
2161 gggtgcagca tttctaccaa gaggcagctc cagcacaatc tgatgtggct ctattgagat
2221 tcgtgaatcc agacacgggt agggtcctgt ttgagtgcaa acttcataaa tcaggctacg
2281 tcacagtggc tcacaccggc cagcatgatt tggtcatccc ccccaatggt tattctaggt
2341 ttgatccctg ggttaatcaa ttctacacac ttgcccccat gggaaatgga acggggcgta
2401 gacgtgcttt ataatggctg gagctttctt tgctggattg gcatctgatg tccttagctc
2461 tgggcttggt tccctaatca atgctggggc tggggctatc aaccaaaaga ttgattttga
2521 aaataacaga aagttgcagc aagcttcctt ccagtttagc agtaatctac aacaggcttc
2581 ctttcaacat gataaagaga tgctccaagc acaaattgag gccactaaaa agttgcaaca
2641 ggaaatgatg aaagtcaaac aggcaatgct cttagaaggt ggattctctg aaacagatgc
2701 agcccgtggg gcaatcaacg cccctatgac aaaggctctg gactggagcg gaacaaggta
2761 ctgggcccct gatgctagga ctacaacata caatgcaggc cgtttttcca cccctcaacc
2821 tccgggggca ctaccaggaa gaatcaatcc caggacccct acccccgctc ggggctcccc
2881 cagcatatct tctaatgctt ctactgctac tcctatatat tcaaatcaaa ctgtttcaac
2941 gagacttggt tctacagctg gttctggtac caatgtctcg agcctcccgt caactgcaag
3001 gactaggagt tgggttgagg atcaaaacag aaatttgtca cctttcatga ggggggctca
3061 caacatatcg tttgtcaccc caccatctag cagatcctct agccaaggca cagtctcaac
3121 cgtgcctaaa gaagttttgg actcctgggc tggcgctttc aacacgcgca ggcagcctct
3181 cttcgctcac attcgtaggc gaggggagtc acgggtgtaa tgtgaaaaga caaaattgat
3241 tatctttcct tttctttagt gtctttt
//