Typing tool
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Typing tool
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Complete norovirus genomes
| GQ850882 | GII.4 Osaka | |
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| GII.P31 |
ORF1: 1..805
ORF2: 786..2408
ORF3: 2408..3214
LOCUS GQ850882 3267 bp RNA linear VRL 05-OCT-2009
DEFINITION Norovirus Hu/GII.4/Riviera1590/2008/US polymerase gene, partial
cds; and VP1 and VP2 genes, complete cds.
ACCESSION GQ850882
VERSION GQ850882.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Riviera1590/2008/US
ORGANISM Norovirus Hu/GII.4/Riviera1590/2008/US
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3267)
AUTHORS Vega,E. and Vinje,J.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2009) National Calicivirus Laboratory, Centers
for Disease Control and Prevention, 1600 Clifton Rd., Atlanta, GA
30333, USA
FEATURES Location/Qualifiers
source 1..3267
/organism="Norovirus Hu/GII.4/Riviera1590/2008/US"
/mol_type="genomic RNA"
/strain="Hu/GII.4/Riviera1590/2008/US"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:676516"
/geo_loc_name="USA"
/collection_date="Jun-2008"
/note="genotype: GII.4"
CDS <1..805
/codon_start=2
/product="polymerase"
/protein_id="ACX31820.1"
/translation="SRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDV
GDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDE
IVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWF
GKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKL
VIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 786..2408
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="ACX31821.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRSDGSTRGHKATVFTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG
STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2408..3214
/note="minor capsid protein"
/codon_start=1
/product="VP2"
/protein_id="ACX31822.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSTSS
NASTATSVHSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSNQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
3'UTR 3215..3267
ORIGIN
1 ttcccggtgg gactcaacac aacaaaggga tgtgctagca gcagccctag aaatcatggt
61 taaattctct ccagaaccac acctggctca aatagttgca gaagacctac tttcccctag
121 tgtaatggat gtgggtgact ttcaaatatc aataagtgag ggactcccct ctggggtgcc
181 ttgcacctcc caatggaatt ccatcgctca ttggctcctc actctttgtg cactctctga
241 agtcacggac ctgtcccctg acatcattca ggccaattcc cttttctcct tctatggtga
301 tgatgagatt gtgagtacag acataaagtt ggatccagag aaactgacgg caaaactcaa
361 ggagtacggg ctgaaaccaa cccgccccga caaaactgaa ggaccccttg ttatctctga
421 agatctggat ggcctgacat tcctgcggag gactgtgacc cgtgacccag ctggttggtt
481 tggaaaattg gaacaaagct caattctcag gcaaatgtac tggaccaggg gccccaacca
541 tgaagatcca tctgaaacaa tgataccaca ctcccaaaga cccatacaat tgatgtctct
601 gctgggcgag gctgcactcc acggcccggc attctatagt aaaattagta agttagtcat
661 tgcagagttg aaggaaggtg gtatggattt ttacgtgccc agacaagagc caatgttcag
721 atggatgaga ttctcagatc tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt
781 tgtgaatgaa gatggcgtcg aatgacgcca acccatctga tgggtccaca gccaacctcg
841 tcccagaggt caacaatgag gttatggctt tggaacccgt tgtaggtgcc gctattgcgg
901 cgcctgtagc gggccaacaa aatgtaattg acccctggat tagaaataat tttgtacaag
961 cccctggtgg agagtttaca gtgtccccta gaaatgctcc aggtgagata ctatggagtg
1021 cgcccttggg ccctgatttg aacccttacc tttctcatct ggccagaatg tataatggtt
1081 atgcaggtgg ctttgaagtg caggtaatcc ttgcggggaa cgcgttcacc gccggaaaaa
1141 tcatatttgc agcagttcca cctaactttc caactgaagg cttgagcccc agccaggtta
1201 ctatgttccc ccatataata gtagatgtta ggcaattgga acctgtgttg atccccttac
1261 ctgatgttag aaataacttc tatcactaca accaatcaaa tgaccctacc attaaattga
1321 tagcaatgct gtacacacca cttagggcta ataatgctgg ggatgatgtc ttcacagtct
1381 cctgtcgagt cctcacgaga ccatcccctg actttgactt catatttctg gtaccaccaa
1441 cagttgaatc aagaaccaaa ccatttaccg ttccaatctt aactgttgag gaaatgacca
1501 attcaagatt ccccattcct ttggaaaggt tgtacacggg tcccagcagt gcttttgttg
1561 tccagccaca aaacggcagg tgcacgactg atggcgtgct cttaggcacc acccagctgt
1621 ctgctgtcaa catctgcacc tttagagggg atgtcaccca cattgcaggc tctcgcaatt
1681 atacaatgaa tttggcctct caaaattgga ataactatga tccaacagaa gaaatcccag
1741 cccccctagg caccccagat ttcgtgggaa agattcaagg catgctcacc caaaccacaa
1801 gaagtgacgg ctcgacccgc ggccacaagg ccacagtgtt cactgggagt gccgacttcg
1861 ccccaaaatt gggcagagtc caattcgcca ctgacacaga caacgatttc gaatctggcc
1921 aaaacacgaa attcacccca gttggcgtca tccaggatgg ttccactacc caccgaaatg
1981 aacctcaaca atgggtactc ccaaattact caggtagaac tggtcataat gtgcatctag
2041 cccctgctgt cgcccctact tacccgggtg agcaactcct tttcttcagg tccactatgc
2101 ccggatgtag cgggtacccc aacatggatc tagattgctt gctcccccag gagtgggtgc
2161 agcacttcta ccaagaagca gctccagcac agtctgatgt ggctctgcta agatttgtga
2221 atccagacac aggtagggtt ctctttgagt gcaagctcca taaatcagga tatgtcacag
2281 tggctcacac tggtcagcat gatttggtta ttccccccaa tggttatttt agatttgatt
2341 cctgggttaa tcaattctac acacttgccc ccatgggaaa tggaacgggg cgtagacgtg
2401 ctttataatg gctggagctt tcttcgctgg attggcatct gatgtccttg gctctggact
2461 tggttcccta atcaatgctg gggctggggc tatcaaccaa aagattgatt ttgaaaataa
2521 cagaaaattg cagcaagctt ccttccagtt tagcagtaat ctacaacagg cttcctttca
2581 acatgataaa gagatgctcc aagcacaaat tgaggccact aaaaagttac aacaggaaat
2641 gatgaaagtc aaacaggcaa tgctcttaga aggtgggttt tctgaaacag acgcagcccg
2701 tggggcaatc aacgccccca tgacaaaggc tttggactgg agcggaacaa ggtactgggc
2761 ccctgatgct aggactacaa catacaatgc aggccgcttt tccacccctc aaccttcggg
2821 ggcattgtca ggaagaatca accccaggac tcccaccccc gctcggggct cctctagcac
2881 atcttctaat gcttctactg ctacttctgt acattcaaat caaactgttt caacgagact
2941 tggctctaca gctggttctg gcaccaatgt ctcgagtctc ccgtcaactg caaggactag
3001 gagttgggtt gaggatcaaa acagaaatct gtcacctttc atgagggggg ctcacaacat
3061 atcgtttgtc accccaccat ctagcagatc ctctaaccaa ggcacagtct caaccgtgcc
3121 taaagaagtt ttggactcct ggactggcgc tttcaacacg cgcaggcagc ctctcttcgc
3181 tcacattcgt aggcgagggg agtcacgggt gtaatgtgaa aagacaaaat tgattatctt
3241 tctttttctt tttctctagt gtctttt
//