Typing tool
|
Complete norovirus genomes
GQ850882 | GII.4 Osaka | ||
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GII.P31 |
ORF1: 1..805 ORF2: 786..2408 ORF3: 2408..3214LOCUS GQ850882 3267 bp RNA linear VRL 05-OCT-2009 DEFINITION Norovirus Hu/GII.4/Riviera1590/2008/US polymerase gene, partial cds; and VP1 and VP2 genes, complete cds. ACCESSION GQ850882 VERSION GQ850882.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/Riviera1590/2008/US ORGANISM Norovirus Hu/GII.4/Riviera1590/2008/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3267) AUTHORS Vega,E. and Vinje,J. TITLE Direct Submission JOURNAL Submitted (27-AUG-2009) National Calicivirus Laboratory, Centers for Disease Control and Prevention, 1600 Clifton Rd., Atlanta, GA 30333, USA FEATURES Location/Qualifiers source 1..3267 /organism="Norovirus Hu/GII.4/Riviera1590/2008/US" /mol_type="genomic RNA" /strain="Hu/GII.4/Riviera1590/2008/US" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:676516" /country="USA" /collection_date="Jun-2008" /note="genotype: GII.4" CDS <1..805 /codon_start=2 /product="polymerase" /protein_id="ACX31820.1" /translation="SRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDV GDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDE IVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWF GKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKL VIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 786..2408 /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="ACX31821.1" /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRSDGSTRGHKATVFTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2408..3214 /note="minor capsid protein" /codon_start=1 /product="VP2" /protein_id="ACX31822.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSTSS NASTATSVHSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSNQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" 3'UTR 3215..3267 ORIGIN 1 ttcccggtgg gactcaacac aacaaaggga tgtgctagca gcagccctag aaatcatggt 61 taaattctct ccagaaccac acctggctca aatagttgca gaagacctac tttcccctag 121 tgtaatggat gtgggtgact ttcaaatatc aataagtgag ggactcccct ctggggtgcc 181 ttgcacctcc caatggaatt ccatcgctca ttggctcctc actctttgtg cactctctga 241 agtcacggac ctgtcccctg acatcattca ggccaattcc cttttctcct tctatggtga 301 tgatgagatt gtgagtacag acataaagtt ggatccagag aaactgacgg caaaactcaa 361 ggagtacggg ctgaaaccaa cccgccccga caaaactgaa ggaccccttg ttatctctga 421 agatctggat ggcctgacat tcctgcggag gactgtgacc cgtgacccag ctggttggtt 481 tggaaaattg gaacaaagct caattctcag gcaaatgtac tggaccaggg gccccaacca 541 tgaagatcca tctgaaacaa tgataccaca ctcccaaaga cccatacaat tgatgtctct 601 gctgggcgag gctgcactcc acggcccggc attctatagt aaaattagta agttagtcat 661 tgcagagttg aaggaaggtg gtatggattt ttacgtgccc agacaagagc caatgttcag 721 atggatgaga ttctcagatc tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt 781 tgtgaatgaa gatggcgtcg aatgacgcca acccatctga tgggtccaca gccaacctcg 841 tcccagaggt caacaatgag gttatggctt tggaacccgt tgtaggtgcc gctattgcgg 901 cgcctgtagc gggccaacaa aatgtaattg acccctggat tagaaataat tttgtacaag 961 cccctggtgg agagtttaca gtgtccccta gaaatgctcc aggtgagata ctatggagtg 1021 cgcccttggg ccctgatttg aacccttacc tttctcatct ggccagaatg tataatggtt 1081 atgcaggtgg ctttgaagtg caggtaatcc ttgcggggaa cgcgttcacc gccggaaaaa 1141 tcatatttgc agcagttcca cctaactttc caactgaagg cttgagcccc agccaggtta 1201 ctatgttccc ccatataata gtagatgtta ggcaattgga acctgtgttg atccccttac 1261 ctgatgttag aaataacttc tatcactaca accaatcaaa tgaccctacc attaaattga 1321 tagcaatgct gtacacacca cttagggcta ataatgctgg ggatgatgtc ttcacagtct 1381 cctgtcgagt cctcacgaga ccatcccctg actttgactt catatttctg gtaccaccaa 1441 cagttgaatc aagaaccaaa ccatttaccg ttccaatctt aactgttgag gaaatgacca 1501 attcaagatt ccccattcct ttggaaaggt tgtacacggg tcccagcagt gcttttgttg 1561 tccagccaca aaacggcagg tgcacgactg atggcgtgct cttaggcacc acccagctgt 1621 ctgctgtcaa catctgcacc tttagagggg atgtcaccca cattgcaggc tctcgcaatt 1681 atacaatgaa tttggcctct caaaattgga ataactatga tccaacagaa gaaatcccag 1741 cccccctagg caccccagat ttcgtgggaa agattcaagg catgctcacc caaaccacaa 1801 gaagtgacgg ctcgacccgc ggccacaagg ccacagtgtt cactgggagt gccgacttcg 1861 ccccaaaatt gggcagagtc caattcgcca ctgacacaga caacgatttc gaatctggcc 1921 aaaacacgaa attcacccca gttggcgtca tccaggatgg ttccactacc caccgaaatg 1981 aacctcaaca atgggtactc ccaaattact caggtagaac tggtcataat gtgcatctag 2041 cccctgctgt cgcccctact tacccgggtg agcaactcct tttcttcagg tccactatgc 2101 ccggatgtag cgggtacccc aacatggatc tagattgctt gctcccccag gagtgggtgc 2161 agcacttcta ccaagaagca gctccagcac agtctgatgt ggctctgcta agatttgtga 2221 atccagacac aggtagggtt ctctttgagt gcaagctcca taaatcagga tatgtcacag 2281 tggctcacac tggtcagcat gatttggtta ttccccccaa tggttatttt agatttgatt 2341 cctgggttaa tcaattctac acacttgccc ccatgggaaa tggaacgggg cgtagacgtg 2401 ctttataatg gctggagctt tcttcgctgg attggcatct gatgtccttg gctctggact 2461 tggttcccta atcaatgctg gggctggggc tatcaaccaa aagattgatt ttgaaaataa 2521 cagaaaattg cagcaagctt ccttccagtt tagcagtaat ctacaacagg cttcctttca 2581 acatgataaa gagatgctcc aagcacaaat tgaggccact aaaaagttac aacaggaaat 2641 gatgaaagtc aaacaggcaa tgctcttaga aggtgggttt tctgaaacag acgcagcccg 2701 tggggcaatc aacgccccca tgacaaaggc tttggactgg agcggaacaa ggtactgggc 2761 ccctgatgct aggactacaa catacaatgc aggccgcttt tccacccctc aaccttcggg 2821 ggcattgtca ggaagaatca accccaggac tcccaccccc gctcggggct cctctagcac 2881 atcttctaat gcttctactg ctacttctgt acattcaaat caaactgttt caacgagact 2941 tggctctaca gctggttctg gcaccaatgt ctcgagtctc ccgtcaactg caaggactag 3001 gagttgggtt gaggatcaaa acagaaatct gtcacctttc atgagggggg ctcacaacat 3061 atcgtttgtc accccaccat ctagcagatc ctctaaccaa ggcacagtct caaccgtgcc 3121 taaagaagtt ttggactcct ggactggcgc tttcaacacg cgcaggcagc ctctcttcgc 3181 tcacattcgt aggcgagggg agtcacgggt gtaatgtgaa aagacaaaat tgattatctt 3241 tctttttctt tttctctagt gtctttt //