Typing tool
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Typing tool
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Complete norovirus genomes
| GQ845369 | GII.4 Osaka | |
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| GII.P31 |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS GQ845369 7560 bp RNA linear VRL 06-FEB-2012
DEFINITION Norovirus Hu/GII.4/Armidale/NSW390I/2008/AU, complete genome.
ACCESSION GQ845369
VERSION GQ845369.3
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Armidale/NSW390I/2008/AU
ORGANISM Norovirus Hu/GII.4/Armidale/NSW390I/2008/AU
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7560)
AUTHORS Eden,J.S., Bull,R.A., Tu,E., McIver,C.J., Lyon,M.J., Marshall,J.A.,
Smith,D.W., Musto,J., Rawlinson,W.D. and White,P.A.
TITLE Norovirus GII.4 variant 2006b caused epidemics of acute
gastroenteritis in Australia during 2007 and 2008
JOURNAL J. Clin. Virol. 49 (4), 265-271 (2010)
PUBMED 20888289
REFERENCE 2 (bases 1 to 7560)
AUTHORS Eden,J.-S., Bull,R.A. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2009) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REFERENCE 3 (bases 1 to 7560)
AUTHORS Eden,J.-S., Bull,R.A. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2010) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REMARK Sequence update by submitter
REFERENCE 4 (bases 1 to 7560)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REMARK Sequence update by submitter
COMMENT On Feb 6, 2012 this sequence version replaced GQ845369.2.
FEATURES Location/Qualifiers
source 1..7560
/organism="Norovirus Hu/GII.4/Armidale/NSW390I/2008/AU"
/mol_type="genomic RNA"
/strain="Hu/GII.4/NSW390I/2008/AU"
/host="Homo sapiens"
/db_xref="taxon:676540"
/country="Australia"
/collection_date="2008"
/note="genotype: GII.4"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ADK12920.2"
/translation="MKMASNDASAAAAANSNNDIAKSSSDGMLSNMAVTFKRALGARP
KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVKQPE
ETNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILMAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTLTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLRDVKTM
PDLKQALKNVSIKKCQIVYGGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRITKRMNIQNLWSKPQVEDTEEAASKDGC
SRPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGTKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSIVNEDGVE"
CDS 5085..6707
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="ACX31885.1"
/translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRSDGSTRGHKATVLTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG
STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6707..7513
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AEZ56472.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSTSS
SASTATSVYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
3'UTR 7514..7560
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga
61 catcgcaaaa tcttcaagtg acggtatgct atctaacatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcctaaac agccgccccc gaaggaaata ccacccagac ccccacgacc
181 acccacacca gaattggtca aaaagatccc tcctccccca cccaacgggg aggatgaact
241 agtggtttcc tacagcgcca aagatggcgt ttccggcctg cctgagctca ccactgtcaa
301 acaaccggaa gaaaccaaca cggcgttcag tgttccccca ctcaaccaga gggagaatag
361 ggacgccaag gaaccactaa ctggaacaat tattgaaatg tgggatggag aaatatacca
421 ctacggcctg tatgtggaac gaggtcttat acttggtgtg cacaagccac cggcagccat
481 cagccttgcc aaggtcgagc taacaccact ctctttgttc tggaggcctg tgtatacccc
541 ccagtatctc atctctccag acactcttag gagactgcat ggagagtcat tcccctacac
601 tgcatttgac aacaattgct acgccttctg ttgttgggtg ttagacctaa acgactcatg
661 gctaagcagg agaatgattc agagaacaac aggtttcttc aggccatacc aggattggaa
721 caggaaaccc cttcccacta tggatgattc caaattaaag aaggtggcta acatattctt
781 gtgcactttg tcttcactat tcaccagacc cattaaggac ataataggga agttgaaacc
841 tcttaacatt ctcaacattc tggctacgtg tgattggacc ttcgcaggca tagtggagtc
901 cctgatactc atggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgcccct ttactaggtg attacgagct gcaaggacct gaggaccttg cagtagaact
1021 agtcccaata gtgatggggg ggataggttt ggtgctagga tttaccaaag agaaaattgg
1081 aaagatgttg tcatctgctg catccacttt gagagcctgt aaagaccttg gtgcatacgg
1141 actggaaatt ttgaaattgg tcatgaaatg gttcttccca aagaaagagg aagcaaacga
1201 attggctatg gtgagatcca tcgaggatgc ggtgctggac ctcgaggcaa ttgaaaacaa
1261 ccacatgacc accctgctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 ccttgaggag gagaaagcca gaaaactctc aaccaaatct gcttcacccg atattgtggg
1381 cacaatcaac tctcttctgg caagaatcgc tgctgcacgc tccctagtgc atcgggcgaa
1441 agaagagctc tccagcaggc cgagacctgt tgttgtgatg atatcgggaa aaccagggat
1501 agggaaaact caccttgcca gggagctggc caagaagatc gcagcctccc tcacagggga
1561 ccagcgcgtg ggtctcatcc cgcgcaatgg tgtcgaccat tgggacgcgt acaagggaga
1621 aagggttgtc ctgtgggacg actatggaat gagcaacccc attcatgatg ccctcaggtt
1681 gcaggaactt gctgacactt gccccctcac gctaaattgt gacaggattg agaacaaagg
1741 gaaagtcttt gacagtgatg ccataattat caccaccaat ctggccaacc cagcaccact
1801 ggattatgtc aactttgaag cgtgctcgag gcgcattgac ttcctcgtgt acgcagaggc
1861 tcctgaggtg gaaaaagcaa agcgcgactt cccaggccaa cctgacatgt ggaagaacgc
1921 tttcagtcct gacttctcgc acataaaact gtcattggct ccacagggtg gttttgataa
1981 gaacggcaac accccacatg gaaaaggcgt catgaaaacc ctcactaccg gttccctcat
2041 cgcccgagca tcagggttac tccatgagag gctagatgaa tatgaattgc aaggcccaac
2101 tctcaccact ttcaactttg accgcaacaa gatccttgct ttcagacagc ttgctgctga
2161 aaacaagtat gggctcatgg acacaatgag agttggaaaa cagctcaggg atgtcaagac
2221 catgccagac ctcaaacaag cactcaagaa tgtctcgatc aaaaagtgcc agatagtgta
2281 cggtggtagc acctacacac ttgaggccga tggcaagggc agtgtgaaag ttgacaaagt
2341 gcaaagtgcc actgtgcaaa ccaacaacga actagccggt gccctacacc acctaaggtg
2401 cgccagaatt agatactatg tcaagtgtgt ccaggaggca ctgtactcca tcatccaaat
2461 tgctggggct gcatttgtca ccacgcgcat tactaagcgc atgaacatac agaacctctg
2521 gtccaagcca caggtggagg acacagaaga ggcggccagc aaagatggtt gctcaagacc
2581 caaagatgat gaagagtttg tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg
2641 gaaaaacaag actggccgtg gtaagaagca cacagccttc tcaagcaaag ggctcagtga
2701 tgaggagtac gatgagtaca agagaatcag ggaagagagg aatggcaagt actccataga
2761 agagtacctt caggacagag acaagtatta tgaggaggtg gccattgcca gggcaaccga
2821 agaggacttc tgtgaagaag aagaggccaa aatccggcag agaattttta gaccaacaag
2881 gaaacaacgc aaagaagaga gggcctctct cggcttggtc acaggctctg aaatcaggaa
2941 gagaaaccca gaagacttca aacccaaggg aaaactgtgg gccgacgatg acagaagtgt
3001 tgactacaat gagaaactca actttgaggc cccaccaagc atctggtcgc ggatagtcaa
3061 ctttggttca ggttggggct tctgggtctc ccccagtctg tttataacat caacccatgt
3121 cataccccaa ggtacaaaag agttcttcgg agtccccatc aaacaaatcc agatacacaa
3181 atcaggtgaa ttctgccggt taagattccc aaagccaatc agaactgatg tgacgggcat
3241 gattctagaa gaaggtgcgc ccgaaggaac cgtggccaca ctactcatca agagaccaac
3301 tggggaactc atgcctctgg cagctagaat gggaacccat gcaaccatga agattcaagg
3361 gcgcacagtt ggaggacaaa tgggcatgct cctgacaggg tccaacgcca agagtatgga
3421 cctaggcaca acaccgggtg actgcggctg tccctacatc tacaagaggg ggaatgacta
3481 cgtggtcata ggagtccata cggccgctgc ccgtggagga aacactgtca tatgtgccac
3541 ccaggggagt gaaggggaag ccacacttga aggtggtgac aataaaggaa catactgtgg
3601 tgcaccaatc ttgggcccag ggagtgcccc aaaactcagt actaagacta agttttggag
3661 atcatccaca acaccactcc cacctggcac ctacgaacca gcctacctcg gtggcaagga
3721 ccccagagtc aaaggtggcc cttcattgca acaagttatg agggaccagc taaaaccatt
3781 cacagaaccc agaggtaaac caccaagacc aagtgtgttg gaagctgcca agaaaaccat
3841 catcaatgtt cttgagcaaa caattgaccc accccaaaaa tggtcattcg cgcaagcttg
3901 cgcatctctt gacaaaacca cttccagcgg ccacccgcac catatgcgga agaatgactg
3961 ttggaacggg gagtcattca caggaaaatt agcagatcag gcctccaagg ccaatctaat
4021 gtttgaagag gggaagaaca tgactccagt ctacacaggt gcacttaagg atgaattggt
4081 aaagactgac aaaatttatg gtaagatcaa gaagaggctt ctgtggggct cagacctggc
4141 gaccatgata cggtgcgccc gagcttttgg aggccttatg gatgaactca aggcacattg
4201 tgtcaccctc cctgtcagag ttggtatgaa catgaatgag gatggcccca tcatctttga
4261 gaaacactcc agatataaat atcattatga tgctgattat tcccggtggg actcaacaca
4321 acaaagggat gtgctagcag cagccctaga aatcatggtt aaattctctc cagaaccaca
4381 cctggctcaa atagttgcag aagacctact ttcccctagt gtaatggatg tgggtgactt
4441 tcaaatatca ataagtgagg gactcccctc tggggtgcct tgcacctccc aatggaattc
4501 catcgcccat tggctcctca ctctttgtgc actctctgaa gtcacggacc tgtcccctga
4561 catcattcag gccaattccc tcttctcctt ctatggtgat gatgagattg tgagtacaga
4621 cataaagttg gatccagaga aactgacggc aaaactcaag gagtacgggc tgaaaccaac
4681 ccgccccgac aaaactgaag gaccccttgt tatctctgaa gatctggatg gcctgacatt
4741 cctgcggagg actgtgaccc gtgacccagc tggttggttt ggaaaattgg aacaaagctc
4801 aatcctcagg caaatgtact ggaccagggg ccccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaatt gatgtctctg ctgggcgagg ctgcgctcca
4921 cggcccggca ttctatagta aaattagtaa gttagtcatt gcagagttga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 aagcacgtgg gagggcgatc gcaatctggc tcccagtatt gtgaatgaag atggcgtcga
5101 atgacgccaa cccatctgat gggtccacag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggcttt ggagcccgtt gtaggtgccg ctattgcggc gcctgtagcg ggccaacaaa
5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag
5281 tgtcccctag aaatgctcca ggtgagatac tatggagtgc gcccttgggc cctgatttga
5341 acccttacct ttctcatctg gccagaatgt ataatggtta tgcaggtggt tttgaagtgc
5401 aggtaatcct cgcggggaac gcgttcaccg ccggaaaaat catatttgca gcagttccac
5461 ctaactttcc aactgaaggc ttgagcccca gccaggttac tatgttcccc catataatag
5521 tagatgttag gcaattggaa cctgtgttaa tccccttacc tgatgttagg aataacttct
5581 atcactacaa ccaatcaaat gaccctacca ttaaattgat agcaatgctg tacacaccac
5641 ttagggctaa taatgctggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgagac
5701 catcccctga ctttgatttc atatttctgg taccaccaac agttgaatca agaaccaaac
5761 catttaccgt tccaatctta actgttgagg aaatgaccaa ttcaagattc cccattcctt
5821 tggaaaggtt gtacacgggt cccagcagtg cttttgttgt ccagccacaa aacggcaggt
5881 gcacgactga tggcgtgctc ttaggcacca cccagctgtc tgctgtcaac atctgcacct
5941 ttagagggga tgtcacccac attgcaggct ctcgcaatta tacaatgaat ttggcctctc
6001 aaaattggaa caactatgat ccaacagaag aaatcccagc ccccctgggc accccagatt
6061 tcgtgggaaa gatccaaggc atgctcaccc aaaccacaag aagtgatggc tcgactcgcg
6121 gccacaaggc cacagtgctc actgggagtg ccgacttcgc cccaaaattg ggcagagtcc
6181 aattcgccac tgacacagac aacgatttcg aatctggcca aaacacgaaa tttaccccag
6241 ttggcgtcat ccaggatggt tccactaccc accgaaatga acctcaacaa tgggtactcc
6301 caaattactc aggtagaact ggtcataatg tgcatctagc ccctgctgtt gcccccactt
6361 acccgggtga gcaactcctt tttttcaggt ccactatgcc cggatgtagc gggtacccca
6421 acatggatct agattgtttg ctcccccagg agtgggtgca gcacttctac caagaagcag
6481 ctccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttc
6541 tctttgagtg caagctccat aaatcaggat atgtcacagt ggctcacact ggtcagcatg
6601 atttggttat tccccccaat ggttatttta gatttgattc ctgggttaat caattctaca
6661 cacttgcccc catgggaaat ggaacggggc gtagacgtgc tttataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctaa tcaatgctgg
6781 ggctggggct atcaaccaaa agattgattt tgaaaataat agaaaattgc agcaagcttc
6841 cttccagttt agcagtaatc tacaacaggc ttcttttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccacta aaaagttgca acaggaaatg atgaaagtca aacaggcaat
6961 gctcttagaa ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccccat
7021 gacaaaggct ttggactgga gcggaacaag gtactgggcc cctgatgcta ggactacaac
7081 atacaatgca ggccgctttt ccacccctca accttcgggg gcattgtcag gaagaattaa
7141 tcccaggact cccacccccg ctcggggctc ctctagtaca tcttctagtg cttctactgc
7201 tacttctgta tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg
7261 caccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa
7321 cagaaatctg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc
7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta ggcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt ctttttcttt agtgtctttt
//