Typing tool
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Typing tool
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Complete norovirus genomes
| GQ845368 | GII.4 Sydney | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6707
ORF3: 6707..7513
LOCUS GQ845368 7559 bp RNA linear VRL 06-FEB-2012
DEFINITION Norovirus Hu/GII.4/Sutherland/NSW505G/2007/AUS, complete genome.
ACCESSION GQ845368
VERSION GQ845368.2
KEYWORDS .
SOURCE Norovirus Hu/GII.4/Sutherland/NSW505G/2007/AUS
ORGANISM Norovirus Hu/GII.4/Sutherland/NSW505G/2007/AUS
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7559)
AUTHORS Eden,J.S., Bull,R.A., Tu,E., McIver,C.J., Lyon,M.J., Marshall,J.A.,
Smith,D.W., Musto,J., Rawlinson,W.D. and White,P.A.
TITLE Norovirus GII.4 variant 2006b caused epidemics of acute
gastroenteritis in Australia during 2007 and 2008
JOURNAL J. Clin. Virol. 49 (4), 265-271 (2010)
PUBMED 20888289
REFERENCE 2 (bases 1 to 7559)
AUTHORS Eden,J.-S., Bull,R.A. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2009) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REFERENCE 3 (bases 1 to 7559)
AUTHORS Eden,J.-S. and White,P.A.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2012) School of Biotechnology & Biomolecular
Sciences, University of New South Wales, Anzac Parade, Sydney, NSW
2052, Australia
REMARK Sequence update by submitter
COMMENT On Feb 6, 2012 this sequence version replaced GQ845368.1.
FEATURES Location/Qualifiers
source 1..7559
/organism="Norovirus Hu/GII.4/Sutherland/NSW505G/2007/AUS"
/mol_type="genomic RNA"
/strain="Hu/GII.4/NSW505G/2007/AU"
/host="Homo sapiens"
/db_xref="taxon:676544"
/country="Australia"
/collection_date="2007"
/note="genotype: GII.4"
5'UTR 1..4
CDS 5..5104
/note="ORF1"
/codon_start=1
/product="non-structural polyprotein"
/protein_id="ACX31890.2"
/translation="MKMASNDASAAAVANSNNDTTKSSSDGVLSSMAVTFKRALGARS
KQPPPRDIPQKPPRPPTPELVKKIPPPPPNGEDELVVSYSVKDGVSGLPDLTTVRQPE
EDNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKRLHGETFPYTDFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKVGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEESNELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREL
AKKIATSLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMKIGKQLKDVKTL
PELKQALRNTSIKKCQIVYGGSTYTLESDGKGNVKVDRVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEDTANKDGC
PKPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLDFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTVINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHDDPSESMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5085..6707
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="ACX31891.1"
/translation="MKMASSDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQTNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICTFRGDVTHITGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRGDGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFESNQNTKFTPVGVIQDG
NTTHQNEPQQWVLPGYSGRDGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSEVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
CDS 6707..7513
/note="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="AEZ56471.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQEMLLEGGFFETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGRFSTPQPSGALPGRTNLRATVPARGSSSAFP
NTSPVTSVYSNQTVSTRLGSSAGSGTSVSSLPSTARTRGWVEDQNRNLSPFMRGALNT
SFVTPPSSRSSSQSTVSTVPKEILDSWTGAFNTRRQPLFAHVRKRGESRV"
3'UTR 7514..7559
ORIGIN
1 gtgaatgaag atggcctcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga
61 cacaacaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggtctaaac aacctccccc gagggacata ccacaaaaac ccccacgacc
181 gcccacccca gaactggtca aaaagatccc ccctcccccg cccaacgggg aggatgagct
241 agtggtttct tacagtgtta aagatggcgt ctctggtctg cccgacctca ccactgtcag
301 gcaacctgaa gaagacaata ctgccttcag tgttccccca ctcaaccaga gggagaatag
361 ggacgccaag gagccactaa ctggaacaat tctggaaatg tgggatggag aaatctacca
421 ctacggtctt tatgtggagc gaggtcttgt acttggtgtg cacaaaccac cagctgccat
481 tagcctcgcc aaggttgaac tgacaccact ctctctgttc tggagacctg tgtacacccc
541 ccagtatctc atctctccag acactctcaa aaggctgcac ggggaaacat tcccttacac
601 agattttgac aacaactgct atgccttctg ttgctgggtc ttggacctaa acgactcttg
661 gttgagtagg agaatgatcc agagaacaac tggtttcttc agaccctatc aagattggaa
721 taggaaaccc ctccccacca tggatgattc taagttaaag aaggtggcta acatattcct
781 atgtgctcta tcctcactgt ttaccagacc cattaaagac atcataggga aggtgagacc
841 tctcaacatt cttaacatcc tggcctcatg tgactggact tttgcaggca tagtggaatc
901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttgctaggtg actacgagct gcaggggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatggggg gaattggttt ggtgctagga tttaccaaag agaaagttgg
1081 gaagatgttg tcatctgctg catccaccct aagagcttgc aaagaccttg gtgcgtacgg
1141 actggagatc cttaaattgg tcatgaaatg gttcttccca aagaaagagg aatctaatga
1201 attggctatg gtgaggtcca ttgaggacgc ggtgctagac ctcgaggcaa ttgagaacaa
1261 ccatatgacc accctgctca aagataaaga cagcctggca acctacatga gaaccctaga
1321 ccttgaagag gagaaagcta gaaaactctc aaccaagtct gcctcacctg acatcgtggg
1381 tacaatcaac gctcttctgg cgagaattgc cgctgcacgc tccctggtgc accgagcgaa
1441 ggaggagctt tccagcagaa taagacctgt tgttgtgatg atatcaggca aaccaggaat
1501 agggaagacc caccttgcca gggaactggc taagaaaatc gcaacctccc tcacagggga
1561 ccagcgtgtg ggtctcatcc cacgtaatgg tgtcgaccac tgggacgcat acaaggggga
1621 gagggtcgtt ctgtgggacg actacgggat gagcaaccct atccatgatg ctctcaggtt
1681 acaagagctc gctgacactt gccccctcac gctgaactgc gataggattg aaaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccaccaat ttggccaacc cagcaccgct
1801 ggattatgtc aactttgaag cttgctcgag gcgcattgac ttcctcgttt atgcagaagc
1861 ccctgaagtc gagaaggcga aacgtgactt cccaggtcaa cccgacatgt ggaagaacgc
1921 tttcagccct gatttctcgc acataaaact gtcactggct ccacaaggcg gcttcgacaa
1981 gaatgggaac accccacatg ggaagggcgt catgaagact ctcaccactg gttcgctcat
2041 tgctcgggca tcagggctac tccatgagag gctggatgag tacgagctac aaggtccaac
2101 tccaactact tttaactttg accgcaacaa ggtgcttgct ttcaggcagc ttgccgctga
2161 gaacaaatat gggctgatgg acacaatgaa aattgggaaa cagctcaagg atgtcaaaac
2221 cttgccagaa ctcaaacagg cactcaggaa cacctcaatt aagaagtgcc agatagtgta
2281 cggtggttcc acttacacgc ttgagtctga tggaaaaggc aatgtgaaag ttgacagagt
2341 tcaaagcgcc actgtgcaga ccaacaatga gctggccggt gccctacacc atctgaggtg
2401 tgccagaatc aggtattatg tcaagtgcgt tcaagaggcc ctgtattcca tcattcaaat
2461 tgccggagcc gcatttgtca ccacgcgcat cgctaagcgc atgaacatac aaaatctctg
2521 gtctaaaccg caagtggaag acacagaaga caccgccaac aaggacgggt gccccaaacc
2581 caaagatgat gaagagttcg ttgtctcgtc cgatgacatt aagactgagg gcaagaaggg
2641 gaagaacaag accggccgtg gcaagaagca cacagccttt tcaagtaaag gccttagtga
2701 tgaagagtac gatgagtaca aaaggatcag ggaagaaaga aacggcaagt actccataga
2761 agagtacctt caggacaggg acaagtacta tgaagaggtg gccattgcca gggcgaccga
2821 ggaggacttc tgtgaagagg aggaggcaaa aattcggcaa aggatcttca gaccaacgag
2881 gaaacaacgc aaggaagaga gggcctctct tggtctagtc acaggctctg aaattaggaa
2941 aagaaaccca gatgatttca aacccaaagg aaaactgtgg gctgatgatg acaggagtgt
3001 tgactataat gagaaacttg attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ttttggttcg ggttggggct tttgggtctc ccccagcctg ttcataacat caactcatgt
3121 aatacctcag ggtgcacaag agtttttcgg agtgcccatc aaacaaattc agatacacaa
3181 atcaggtgag ttctgtcgct tgagattccc aaaaccaatc aggactgatg tgacaggtat
3241 gatcctagaa gaaggtgcgc ccgaaggcac tgtggtcaca ctactcatca agaggtcaac
3301 tggagagctt atgcccctag cagccagaat gggaacccat gcaaccatga aaatccaagg
3361 acgcactgtt ggaggccaaa tgggtatgct cttgacaggg tccaacgcca agagcatgga
3421 cctaggcacc acaccaggtg actgtggttg tccctacatt tacaagagag gaaatgacta
3481 tgtggttatt ggggtccaca cggctgctgc tcgcggtggg aacactgtca tatgtgccac
3541 ccagggaagt gagggagaag ccacacttga aggcggtgac aacaagggga cctactgcgg
3601 tgcgccaatc ctaggcccag gaaacgcccc aaaactcagc accaaaacta aattttggag
3661 atcatccaca gcaccactcc cccctggcac ctatgaaccg gcctatcttg gtggcaagga
3721 ccctagagta aagggcggcc cctcattgca acaagttatg agggaccagt tgaaaccatt
3781 cacagaaccc aggggcaaac caccaaagcc aagtgtgttg gaggccgcca agaaaaccgt
3841 catcaatgtc cttgagcaaa caattgatcc acctgaaaaa tggtcatttg cacaagcctg
3901 tgcgtctctt gacaagacaa catccagtgg ccatccgcac cacatgcgga aaaatgactg
3961 ttggaatggg gagtccttca caggcaagtt ggcagaccag gcttctaagg ccaacctgat
4021 gtttgaagag gggaagaaca tgacaccagt ttacacaggt gcactcaaag atgaactggt
4081 caaaactgac aagatttatg gcaagatcaa aaagaggctt ctttggggct cggacctagc
4141 gaccatgatc cggtgcgctc gagcgttcgg aggcttgatg gatgaactca aggcacactg
4201 tgtcacactt cctgttagag ttggtatgaa catgaatgag gacggcccca tcatctttga
4261 gaagcactcc agatacaaat accactatga tgctgactac tcacgatggg attcaacaca
4321 gcagagagcc gtgttagcag cagccctgga aatcatggtt aaattctccc cagaaccaca
4381 cttggcccaa atagttgcag aagaccttct atctcctagt gtaatggatg tgggagattt
4441 caagatatct atcaatgagg gccttccctc tggtgtgcct tgcacctcgc aatggaattc
4501 catcgcccac tggctcctca ccctctgtgc actctctgaa gtcacaaatt tgtcccctga
4561 tattatacaa gccaattccc tcttctcttt ttatggtgat gatgaaattg tcagtacaga
4621 cataaaactg gatccagaga aactcacagc aaagctcaag gaatacgggt tgaagccaac
4681 ccgccctgac aagactgagg gacccctcgt catctctgaa gacttggacg gcctcacctt
4741 cctgcggcga actgtaaccc gtgacccagc aggttggttt ggaaaactgg agcagagctc
4801 aattcttagg caaatgtact ggactagagg ccccaatcat gatgacccat ctgaatcaat
4861 gataccacac tcccaaagac ccatacaatt aatgtctctg ttgggtgagg ccgcacttca
4921 tggcccagca ttctacagta aaatcagcaa actagtcatt gcagagctga aggaaggtgg
4981 catggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 gtgacgccag cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg
5161 ttatggctct ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa
5221 acataattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gaattcacag
5281 tgtcccccag aaatgctcca ggtgaaatac tatggagcgc acctttaggc cctgatttga
5341 atccctacct ttcccatttg tctagaatgt ataatggtta tgcaggtggt tttgaagtgc
5401 aagtgatcct cgcggggaac gcgttcaccg ccgggaaggt catatttgca gcagtccctc
5461 caaactttcc aactgaaggt ctaagcccta gtcaagttac catgttcccc catataattg
5521 tagatgttag acaattggag cctgtgttga ttcccctacc tgatgttagg aataattttt
5581 accattacaa tcaaacaaat gaccctacca ttaaattgat agcaatgttg tatacaccac
5641 ttagagctaa taatgctggg gacgatgtct tcacagtctc ttgtcgagtc ctcacgagac
5701 catcccctga ttttgacttc atattcttag tgccacccac agttgaatcc agaactaaac
5761 catttactgt cccaatctta actgttgagg aaatgaccaa ctctagattc cccattcctt
5821 tggaaaggtt gtacacgggt cccagcagtg cttttgttgt ccagccacaa aatggcaggt
5881 gcacgactga tggcgtgctc ttaggcacca cccagctgtc tgctgtcaac atctgcacct
5941 tcagggggga tgtcacccac attacaggct cccgtaatta tacaatgaat ttggcctctc
6001 aaaattggaa caattatgac ccaacagaag aaattccagc ccctctgggg accccagatt
6061 ttgtgggaaa gatccaaggc atgctcaccc aaaccacaag aggagatggc tcgactcgtg
6121 gccacaaagc cacagtgtac actgggagtg ccgacttcgc cccaaaattg ggcagagttc
6181 aattcgctac tgacacagac aatgattttg aatccaacca aaacacaaaa ttcaccccag
6241 tcggtgtcat ccaggatggc aacaccaccc atcaaaatga accccaacaa tgggtactcc
6301 caggttactc aggtagagat ggccacaatg tacacctagc ccctgccgtc gcccccacct
6361 acccgggtga gcaactcctt ttctttaggt ccaccatgcc cggatgtagc gggtatccca
6421 acatgaatct agattgctta ctcccccagg aatgggtgca gcacttctac caagaagcag
6481 ctccagcaca atctgaagtg gctctgctaa gatttgtgaa tccagataca ggtagggttt
6541 tgtttgagtg caagctccat aaatcagggt atgtcacagt ggctcatact ggtcagcatg
6601 atttggttat tccccccaat ggttatttta gatttgattc ctgggtcaac cagttttaca
6661 cacttgcccc catgggaaat ggagcggggc gtagacgtgc attataatgg ctggagcttt
6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttctctaa tcaatgctgg
6781 ggctggggct atcaaccaaa aagttgagtt tgaaaataac agaaaattac aacaagcttc
6841 cttccaattt agtagcaatc tacaacaggc ctcctttcaa catgataaag agatgctcca
6901 agcacaaatt gaggccactc aaaaattgca acaaggttta atgaaggtca aacaggagat
6961 gcttttagaa ggtggattct ttgaaacaga tgcagcccgt ggggcaatca acgcccccat
7021 gacaaaggct ttggactgga gtggaacaag gtactgggct cctgatgcta ggatcacaac
7081 atacaatgca ggccgcttct ccacccctca accttcaggg gcattgccag gtagaactaa
7141 tcttagggcc actgtccccg ctcggggctc ctctagtgca tttcctaata cttcccctgt
7201 cacttctgtg tattcaaatc aaactgtttc aacgagactt ggttcttcag caggttctgg
7261 caccagtgtc tcgagtctcc cgtcaactgc aaggactagg ggctgggttg aggatcaaaa
7321 cagaaatttg tcacctttta tgaggggggc tctcaacaca tcattcgtca ccccaccatc
7381 tagcagatcc tccagtcaaa gcacagtctc aaccgtgcct aaagaaattt tggactcctg
7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct catgttcgca agcgagggga
7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cctttcttta gtgtctttt
//